AT5G62610 : -
Query Information
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AGICode AT5G62610
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G62610 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 1 0.29 -0.32
2 AT1G56690 Pentatricopeptide repeat (PPR) superfamily protein -0.72 0.3 -0.32
3 AT5G44470 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT3G23320.1); Has 74 Blast hits to 74 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.31 -0.31
4 AT1G55300 TBP-associated factor 7 TBP-associated factor 7 0.71 0.29 -0.31
5 AT3G07660 Kinase-related protein of unknown function (DUF1296) -0.71 0.31 -0.33
6 AT5G67330 natural resistance associated macrophage protein 4 ARABIDOPSIS THALIANA NATURAL
RESISTANCE ASSOCIATED MACROPHAGE
PROTEIN 4, natural resistance
associated macrophage protein 4		 0.71 0.35 -0.33
7 AT3G11460 Pentatricopeptide repeat (PPR) superfamily protein -0.7 0.31 -0.32
8 AT1G52160 tRNAse Z3 tRNAse Z3 -0.7 0.32 -0.33
9 AT4G38090 Ribosomal protein S5 domain 2-like superfamily protein 0.69 0.3 -0.31
10 AT5G49230 Drought-responsive family protein HYPERSENSITIVE TO RED AND BLUE 0.69 0.32 -0.31
11 AT5G20200 nucleoporin-related -0.68 0.31 -0.32
12 AT1G77550 tubulin-tyrosine ligases;tubulin-tyrosine ligases -0.68 0.33 -0.31
13 AT4G38200 SEC7-like guanine nucleotide exchange family protein -0.68 0.32 -0.31
14 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 -0.68 0.31 -0.32
15 AT4G19210 RNAse l inhibitor protein 2 ATP-binding cassette E2,
ARABIDOPSIS THALIANA RNASE L
INHIBITOR PROTEIN 2, RNAse l
inhibitor protein 2		 -0.67 0.31 -0.32
16 AT4G30190 H(+)-ATPase 2 H(+)-ATPase 2, H(+)-ATPase 2,
PLASMA MEMBRANE PROTON ATPASE 2		 -0.67 0.3 -0.32
17 AT5G67370 Protein of unknown function (DUF1230) 0.67 0.33 -0.32
18 AT1G68940 Armadillo/beta-catenin-like repeat family protein -0.66 0.31 -0.31
19 AT3G21270 DOF zinc finger protein 2 DOF zinc finger protein 2, DOF
zinc finger protein 2		 0.66 0.31 -0.33
20 AT4G30990 ARM repeat superfamily protein -0.66 0.33 -0.31
21 AT2G26970 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.66 0.33 -0.31
22 AT3G59020 ARM repeat superfamily protein -0.66 0.32 -0.31
23 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.66 0.33 -0.3
24 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 -0.65 0.32 -0.33
25 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 -0.65 0.34 -0.32
26 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 -0.65 0.33 -0.34
27 AT3G57940 Domain of unknown function (DUF1726) ;Putative ATPase
(DUF699)		 -0.65 0.32 -0.33
28 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 -0.65 0.3 -0.32
29 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 -0.65 0.3 -0.3
30 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 -0.64 0.32 -0.31
31 AT1G55700 Cysteine/Histidine-rich C1 domain family protein -0.64 0.3 -0.31
32 AT3G49190 O-acyltransferase (WSD1-like) family protein -0.64 0.32 -0.33
33 AT1G17720 Protein phosphatase 2A, regulatory subunit PR55 ATB BETA -0.64 0.31 -0.32
34 AT4G23930 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.64 0.32 -0.33
35 AT3G19790 unknown protein; Has 32 Blast hits to 26 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2;
Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.64 0.31 -0.32
36 AT2G38650 galacturonosyltransferase 7 galacturonosyltransferase 7, LIKE
GLYCOSYL TRANSFERASE 7		 -0.64 0.3 -0.33
37 AT4G08800 Protein kinase superfamily protein 0.64 0.31 -0.32
38 AT1G14390 Leucine-rich repeat protein kinase family protein -0.64 0.33 -0.31
39 AT1G26460 Tetratricopeptide repeat (TPR)-like superfamily protein -0.64 0.32 -0.3
40 AT2G10950 BSD domain-containing protein 0.63 0.29 -0.29
41 AT2G36840 ACT-like superfamily protein ACT domain repeats 10 0.63 0.31 -0.32
42 AT4G24120 YELLOW STRIPE like 1 YELLOW STRIPE LIKE 1, YELLOW
STRIPE like 1		 -0.63 0.31 -0.31
43 AT3G61590 Galactose oxidase/kelch repeat superfamily protein HS, HAWAIIAN SKIRT -0.63 0.32 -0.31
44 AT3G55150 exocyst subunit exo70 family protein H1 exocyst subunit exo70 family
protein H1, exocyst subunit exo70
family protein H1		 -0.63 0.31 -0.33
45 AT5G40440 mitogen-activated protein kinase kinase 3 mitogen-activated protein kinase
kinase 3, mitogen-activated
protein kinase kinase 3		 0.63 0.32 -0.34
46 AT3G52140 tetratricopeptide repeat (TPR)-containing protein -0.63 0.32 -0.32
47 AT4G05070 Wound-responsive family protein 0.63 0.31 -0.31
48 AT4G01900 GLNB1 homolog GLNB1 homolog, PII 0.63 0.32 -0.31
49 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.62 0.32 -0.32
50 AT5G50390 Pentatricopeptide repeat (PPR-like) superfamily protein EMBRYO DEFECTIVE 3141 -0.62 0.3 -0.3
51 AT3G62360 Carbohydrate-binding-like fold -0.62 0.31 -0.31
52 AT3G06530 ARM repeat superfamily protein -0.62 0.3 -0.32
53 AT5G52950 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.32 -0.33
54 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 -0.62 0.34 -0.34
55 AT5G65590 Dof-type zinc finger DNA-binding family protein 0.62 0.32 -0.29
56 AT3G02650 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.33 -0.3
57 AT1G22710 sucrose-proton symporter 2 ARABIDOPSIS THALIANA
SUCROSE-PROTON SYMPORTER 2,
sucrose-proton symporter 2,
SUCROSE TRANSPORTER 1		 0.62 0.31 -0.31
58 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 -0.61 0.33 -0.33
59 AT5G17270 Protein prenylyltransferase superfamily protein -0.61 0.3 -0.33
60 AT5G09330 NAC domain containing protein 82 NAC domain containing protein 82,
NAC domain containing protein 82,
VND-interacting 1		 -0.61 0.31 -0.31
61 AT4G04470 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein PMP22 0.61 0.31 -0.3
62 AT4G09630 Protein of unknown function (DUF616) -0.61 0.3 -0.3
63 AT5G06200 Uncharacterised protein family (UPF0497) Casparian strip membrane domain
protein 4		 -0.61 0.3 -0.32
64 AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 POPEYE 0.61 0.32 -0.32
65 AT5G64690 neurofilament triplet H protein-related -0.61 0.29 -0.33
66 AT2G11360 transposable element gene -0.6 0.3 -0.3
67 AT4G15290 Cellulose synthase family protein ATCSLB05, CELLULOSE SYNTHASE LIKE
5, CSLB05		 -0.6 0.32 -0.31
68 AT2G24010 serine carboxypeptidase-like 23 serine carboxypeptidase-like 23 0.6 0.3 -0.31
69 AT2G03320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.6 0.29 -0.33
70 AT3G17950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.6 0.32 -0.34
71 AT4G21140 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 -0.6 0.32 -0.32
72 AT5G56070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G56050.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.6 0.31 -0.32
73 AT1G64790 ILITYHIA ILITYHIA -0.6 0.33 -0.3
74 AT3G20520 SHV3-like 3 Glycerophosphodiester
phosphodiesterase (GDPD) like 5,
SHV3-like 3		 -0.6 0.31 -0.29
75 AT3G60860 SEC7-like guanine nucleotide exchange family protein -0.6 0.33 -0.33
76 AT1G19290 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.32 -0.33
77 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.33 -0.3
78 AT1G63590 Receptor-like protein kinase-related family protein 0.6 0.31 -0.32
79 AT3G24630 unknown protein; Has 5348 Blast hits to 3182 proteins in
353 species: Archae - 0; Bacteria - 481; Metazoa - 1959;
Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes -
2313 (source: NCBI BLink).		 0.6 0.31 -0.32
80 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.31 -0.33
81 AT5G22960 alpha/beta-Hydrolases superfamily protein -0.59 0.29 -0.3
82 AT3G27960 Tetratricopeptide repeat (TPR)-like superfamily protein -0.59 0.31 -0.32
83 AT5G36140 cytochrome P450, family 716, subfamily A, polypeptide 2 cytochrome P450, family 716,
subfamily A, polypeptide 2		 -0.59 0.33 -0.33
84 AT3G30370 CONTAINS InterPro DOMAIN/s: Transposase, MuDR, plant
(InterPro:IPR004332); BEST Arabidopsis thaliana protein
match is: SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein (TAIR:AT1G18050.1);
Has 35 Blast hits to 35 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.32 -0.29
85 AT3G44530 homolog of histone chaperone HIRA homolog of histone chaperone HIRA -0.59 0.31 -0.31
86 AT4G05240 Ubiquitin-like superfamily protein -0.59 0.33 -0.3
87 AT3G09090 defective in exine formation protein (DEX1) DEFECTIVE IN EXINE FORMATION 1 -0.59 0.29 -0.33
88 AT1G53170 ethylene response factor 8 ATERF-8, ETHYLENE RESPONSE ELEMENT
BINDING FACTOR 4, ethylene
response factor 8		 0.59 0.3 -0.32
89 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.31 -0.31
90 AT1G50590 RmlC-like cupins superfamily protein 0.59 0.32 -0.33
91 AT1G10520 DNA polymerase lambda (POLL) AtPol{lambda}, DNA polymerase
{lambda}		 0.59 0.31 -0.29
92 AT4G07586 transposable element gene -0.59 0.33 -0.32
93 AT2G03770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.31 -0.3
94 AT1G13830 Carbohydrate-binding X8 domain superfamily protein -0.59 0.33 -0.32
95 AT2G03380 Pentatricopeptide repeat (PPR) superfamily protein -0.59 0.32 -0.31
96 AT4G15460 glycine-rich protein -0.59 0.33 -0.32
97 AT2G40410 Staphylococcal nuclease homologue 0.59 0.31 -0.32
98 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 -0.59 0.31 -0.32
99 AT1G32000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G38190.1); Has 14 Blast hits to 14
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.33 -0.34
100 AT3G15355 ubiquitin-conjugating enzyme 25 PHO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 1, ubiquitin-conjugating
enzyme 25		 0.58 0.29 -0.31
101 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 -0.58 0.31 -0.33
102 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 -0.58 0.29 -0.31
103 AT5G04060 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.58 0.32 -0.32
104 AT5G01720 RNI-like superfamily protein -0.58 0.32 -0.33
105 AT1G69630 F-box/RNI-like superfamily protein 0.58 0.3 -0.31
106 AT5G38820 Transmembrane amino acid transporter family protein -0.58 0.35 -0.33
107 AT1G27595 CONTAINS InterPro DOMAIN/s: Symplekin tight junction
protein C-terminal (InterPro:IPR022075); BEST Arabidopsis
thaliana protein match is: HEAT repeat-containing protein
(TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in
111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi
- 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345
(source: NCBI BLink).		 -0.58 0.31 -0.3
108 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 0.58 0.34 -0.33
109 AT1G53060 Legume lectin family protein 0.58 0.32 -0.32
110 AT2G33410 RNA-binding (RRM/RBD/RNP motifs) family protein -0.58 0.32 -0.3
111 AT1G12620 Pentatricopeptide repeat (PPR) superfamily protein -0.57 0.32 -0.32
112 AT4G14670 casein lytic proteinase B2 casein lytic proteinase B2 -0.57 0.3 -0.31
113 AT5G22600 FBD / Leucine Rich Repeat domains containing protein 0.57 0.34 -0.31
114 AT3G18290 zinc finger protein-related BRUTUS, embryo defective 2454 0.57 0.32 -0.31
115 AT1G21140 Vacuolar iron transporter (VIT) family protein -0.57 0.28 -0.29
116 AT1G21970 Histone superfamily protein AtLEC1, EMBRYO DEFECTIVE 212,
EMBRYO DEFECTIVE 212, LEAFY
COTYLEDON 1, NUCLEAR FACTOR Y,
SUBUNIT B9		 0.57 0.32 -0.3
117 AT1G48040 Protein phosphatase 2C family protein -0.57 0.33 -0.31
118 AT4G32970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32960.1); Has 552 Blast hits
to 489 proteins in 85 species: Archae - 4; Bacteria - 14;
Metazoa - 187; Fungi - 12; Plants - 225; Viruses - 0; Other
Eukaryotes - 110 (source: NCBI BLink).		 -0.57 0.33 -0.32
119 AT3G07060 NHL domain-containing protein embryo defective 1974 -0.57 0.31 -0.31
120 AT2G18610 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.32 -0.32
121 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 -0.57 0.32 -0.3
122 AT4G17750 heat shock factor 1 ARABIDOPSIS THALIANA HEAT SHOCK
FACTOR 1, ARABIDOPSIS THALIANA
CLASS A HEAT SHOCK FACTOR 1A, heat
shock factor 1, CLASS A HEAT SHOCK
FACTOR 1A		 0.56 0.32 -0.3
123 AT1G57870 shaggy-like kinase 42 shaggy-like kinase 42, shaggy-like
kinase 42		 0.56 0.32 -0.32
124 AT1G31812 acyl-CoA-binding protein 6 ACYL-COA-BINDING PROTEIN,
acyl-CoA-binding protein 6		 0.55 0.31 -0.33
125 AT5G40050 F-box/FBD-like domains containing protein 0.55 0.31 -0.32
126 AT4G07540 transposable element gene 0.55 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
127 C0153 Monogalactosyldiacylgycerol-34:6 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		0.74 0.42 -0.45 C0153
128 C0176 MST_2406.9 - - - 0.71 0.47 -0.46
129 C0171 MST_2182.9 - - - 0.7 0.46 -0.47
130 C0181 MST_2904.3 - - - -0.63 0.45 -0.43