AT5G61060 : ATHDA5
Query Information
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AGICode AT5G61060
Description histone deacetylase 5
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G61060 histone deacetylase 5 ATHDA5, histone deacetylase 5,
HDA5		 1 0.32 -0.32
2 AT1G52670 Single hybrid motif superfamily protein -0.75 0.31 -0.3
3 AT4G19380 Long-chain fatty alcohol dehydrogenase family protein -0.74 0.31 -0.31
4 AT1G23120 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.73 0.31 -0.3
5 AT2G22230 Thioesterase superfamily protein -0.73 0.32 -0.31
6 AT3G19200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits
to 51 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.33 -0.32
7 AT2G25220 Protein kinase superfamily protein -0.73 0.34 -0.35
8 AT2G01260 Protein of unknown function (DUF789) -0.72 0.32 -0.31
9 AT5G03040 IQ-domain 2 IQ-domain 2 -0.71 0.31 -0.33
10 AT3G23730 xyloglucan endotransglucosylase/hydrolase 16 xyloglucan
endotransglucosylase/hydrolase 16		 -0.71 0.32 -0.32
11 AT4G30160 villin 4 ATVLN4, villin 4 -0.7 0.31 -0.31
12 AT2G03350 Protein of unknown function, DUF538 -0.7 0.31 -0.31
13 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 -0.69 0.31 -0.33
14 AT5G04160 Nucleotide-sugar transporter family protein -0.69 0.31 -0.35
15 AT2G18290 anaphase promoting complex 10 anaphase promoting complex 10,
EMBRYO DEFECTIVE 2783		 -0.69 0.32 -0.33
16 AT4G37040 methionine aminopeptidase 1D methionine aminopeptidase 1D -0.69 0.34 -0.31
17 AT3G51470 Protein phosphatase 2C family protein -0.69 0.3 -0.3
18 AT3G24310 myb domain protein 305 MYB DOMAIN PROTEIN 71, myb domain
protein 305		 0.68 0.32 -0.32
19 AT1G11850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 12 growth stages; Has 38777 Blast hits to
8185 proteins in 741 species: Archae - 46; Bacteria -
14846; Metazoa - 13013; Fungi - 1392; Plants - 5894;
Viruses - 543; Other Eukaryotes - 3043 (source: NCBI
BLink).		 -0.68 0.29 -0.33
20 AT1G33811 GDSL-like Lipase/Acylhydrolase superfamily protein -0.68 0.33 -0.35
21 AT2G44090 Ankyrin repeat family protein -0.68 0.34 -0.29
22 AT5G09870 cellulose synthase 5 cellulose synthase 5 -0.68 0.32 -0.3
23 AT2G30320 Pseudouridine synthase family protein -0.68 0.3 -0.32
24 AT4G27260 Auxin-responsive GH3 family protein GH3.5, WES1 0.68 0.32 -0.33
25 AT5G60880 breaking of asymmetry in the stomatal lineage BREAKING OF ASYMMETRY IN THE
STOMATAL LINEAGE		 -0.67 0.3 -0.32
26 AT5G52060 BCL-2-associated athanogene 1 BCL-2-associated athanogene 1,
BCL-2-associated athanogene 1		 -0.67 0.32 -0.31
27 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 -0.67 0.32 -0.31
28 AT4G37450 arabinogalactan protein 18 arabinogalactan protein 18,
ATAGP18		 -0.67 0.3 -0.34
29 AT2G38370 Plant protein of unknown function (DUF827) 0.66 0.32 -0.29
30 AT2G25790 Leucine-rich receptor-like protein kinase family protein 0.66 0.35 -0.33
31 AT3G49560 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 -0.66 0.28 -0.31
32 AT3G52960 Thioredoxin superfamily protein -0.66 0.32 -0.3
33 AT4G00895 ATPase, F1 complex, OSCP/delta subunit protein -0.66 0.32 -0.31
34 AT5G01460 LMBR1-like membrane protein -0.66 0.32 -0.31
35 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 -0.66 0.3 -0.33
36 AT4G25750 ABC-2 type transporter family protein ATP-binding cassette G4 -0.66 0.32 -0.33
37 AT5G55710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised
conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 translocon at the inner envelope
membrane of chloroplasts 20-V,
translocon at the inner envelope
membrane of chloroplasts 20-V		 -0.65 0.31 -0.34
38 AT1G31420 Leucine-rich repeat protein kinase family protein FEI 1 -0.65 0.33 -0.32
39 AT1G59740 Major facilitator superfamily protein 0.65 0.32 -0.34
40 AT2G22870 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 embryo defective 2001 -0.65 0.32 -0.32
41 AT5G19250 Glycoprotein membrane precursor GPI-anchored -0.65 0.32 -0.33
42 AT3G49810 ARM repeat superfamily protein 0.65 0.32 -0.32
43 AT3G21310 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.65 0.29 -0.31
44 AT3G15110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi -
0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.65 0.31 -0.34
45 AT1G56190 Phosphoglycerate kinase family protein -0.65 0.33 -0.31
46 AT5G46790 PYR1-like 1 PYR1-like 1, regulatory components
of ABA receptor 12		 -0.65 0.33 -0.31
47 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 0.65 0.3 -0.32
48 AT5G52110 Protein of unknown function (DUF2930) COFACTOR ASSEMBLY OF COMPLEX C,
HIGH CHLOROPHYLL FLUORESCENCE 208		 -0.65 0.31 -0.31
49 AT1G70070 DEAD/DEAH box helicase, putative EMBRYO DEFECTIVE 25, INCREASED
SIZE EXCLUSION LIMIT 2, PIGMENT
DEFECTIVE 317		 -0.64 0.31 -0.35
50 AT3G21200 proton gradient regulation 7 proton gradient regulation 7 -0.64 0.32 -0.31
51 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 -0.64 0.32 -0.29
52 AT2G26900 Sodium Bile acid symporter family bile acid:sodium symporter family
protein 2		 -0.64 0.29 -0.31
53 AT3G07470 Protein of unknown function, DUF538 -0.64 0.31 -0.32
54 AT1G34245 Putative membrane lipoprotein EPIDERMAL PATTERNING FACTOR 2 -0.64 0.32 -0.31
55 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 -0.64 0.34 -0.32
56 AT1G05850 Chitinase family protein ATCTL1, CHITINASE-LIKE PROTEIN 1,
ECTOPIC DEPOSITION OF LIGNIN IN
PITH, ECTOPIC DEPOSITION OF LIGNIN
IN PITH 1, ECTOPIC ROOT HAIR 2,
SENSITIVE TO HOT TEMPERATURES 2,
POM-POM1		 -0.64 0.33 -0.31
57 AT4G31805 WRKY family transcription factor -0.64 0.32 -0.31
58 AT3G25530 glyoxylate reductase 1 ATGHBDH, GHBDH, glyoxylate
reductase 1, GLYOXYLATE REDUCTASE
1		 -0.64 0.33 -0.31
59 AT5G14620 domains rearranged methyltransferase 2 DMT7, domains rearranged
methyltransferase 2		 0.64 0.32 -0.3
60 AT1G24170 Nucleotide-diphospho-sugar transferases superfamily protein GALACTURONOSYLTRANSFERASE-LIKE 8,
LGT9		 -0.64 0.32 -0.31
61 AT5G03390 Protein of unknown function (DUF295) -0.63 0.31 -0.34
62 AT4G34860 Plant neutral invertase family protein alkaline/neutral invertase B 0.63 0.31 -0.32
63 AT1G01090 pyruvate dehydrogenase E1 alpha pyruvate dehydrogenase E1 alpha -0.63 0.31 -0.31
64 AT2G43860 Pectin lyase-like superfamily protein 0.63 0.31 -0.33
65 AT4G29340 profilin 4 profilin 4 -0.63 0.32 -0.31
66 AT2G21880 RAB GTPase homolog 7A RAB GTPase homolog 7A, ARABIDOPSIS
RAB GTPASE HOMOLOG G2, RAB GTPase
homolog 7A		 -0.63 0.31 -0.31
67 AT1G15140 FAD/NAD(P)-binding oxidoreductase -0.63 0.32 -0.32
68 AT2G18245 alpha/beta-Hydrolases superfamily protein -0.63 0.31 -0.3
69 AT5G18430 GDSL-like Lipase/Acylhydrolase superfamily protein -0.63 0.3 -0.31
70 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 -0.63 0.32 -0.31
71 AT5G48430 Eukaryotic aspartyl protease family protein -0.63 0.3 -0.34
72 AT1G55740 seed imbibition 1 seed imbibition 1, raffinose
synthase 1, seed imbibition 1		 0.63 0.29 -0.34
73 AT3G62130 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 L-cysteine desulfhydrase 0.63 0.31 -0.31
74 AT3G24140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 FAMA -0.62 0.3 -0.32
75 AT5G64630 Transducin/WD40 repeat-like superfamily protein FASCIATA 2, MUB3.9, NFB01, NFB1 -0.62 0.3 -0.33
76 AT1G33930 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.31 -0.33
77 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.31 -0.3
78 AT2G22680 Zinc finger (C3HC4-type RING finger) family protein WAV3 homolog 1 0.62 0.33 -0.29
79 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 -0.62 0.32 -0.32
80 AT3G03170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits
to 184 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.3 -0.33
81 AT4G22910 FIZZY-related 2 cell cycle switch protein 52 A1,
FIZZY-related 2		 -0.62 0.29 -0.34
82 AT1G78960 lupeol synthase 2 lupeol synthase 2, lupeol synthase
2		 0.62 0.32 -0.34
83 AT1G18440 Peptidyl-tRNA hydrolase family protein -0.62 0.33 -0.29
84 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 0.62 0.35 -0.34
85 AT3G20450 B-cell receptor-associated protein 31-like -0.62 0.3 -0.3
86 AT3G62100 indole-3-acetic acid inducible 30 indole-3-acetic acid inducible 30 0.61 0.34 -0.32
87 AT2G30980 SHAGGY-related protein kinase dZeta SHAGGY-related protein kinase
dZeta, A. THALIANA SHAGGY-LIKE
KINASE GROUP 2 2, SHAGGY-LIKE
PROTEIN KINASE 23, BIN2-LIKE 1,
SHAGGY-related protein kinase
dZeta		 -0.61 0.33 -0.31
88 AT2G34650 Protein kinase superfamily protein ABRUPTUS, PINOID 0.61 0.34 -0.32
89 AT1G28360 ERF domain protein 12 ERF DOMAIN PROTEIN 12, ERF domain
protein 12		 0.61 0.31 -0.31
90 AT1G69740 Aldolase superfamily protein HEMB1 -0.61 0.31 -0.31
91 AT5G48650 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.61 0.3 -0.31
92 AT4G14360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.61 0.32 -0.3
93 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein 0.61 0.3 -0.32
94 AT2G29560 cytosolic enolase cytosolic enolase -0.61 0.34 -0.28
95 AT5G24320 Transducin/WD40 repeat-like superfamily protein 0.61 0.3 -0.29
96 AT3G62730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
LP.02 two leaves visible, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits
to 172 proteins in 41 species: Archae - 0; Bacteria - 73;
Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.33 -0.29
97 AT4G37250 Leucine-rich repeat protein kinase family protein 0.6 0.34 -0.31
98 AT2G28790 Pathogenesis-related thaumatin superfamily protein 0.6 0.3 -0.31
99 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 0.59 0.32 -0.32
100 AT2G41070 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP12, DPBF4, ENHANCED EM LEVEL 0.59 0.31 -0.3
101 AT5G48170 F-box family protein SLEEPY2, SNEEZY 0.58 0.32 -0.35
102 AT5G60210 ROP interactive partner 5 ROP interactive partner 5 0.58 0.34 -0.29
103 AT5G14080 Tetratricopeptide repeat (TPR)-like superfamily protein 0.58 0.32 -0.33
104 AT1G19850 Transcriptional factor B3 family protein / auxin-responsive
factor AUX/IAA-related		 AUXIN RESPONSE FACTOR 5,
indole-3-acetic acid inducible 24,
MONOPTEROS		 0.58 0.31 -0.31
105 AT2G22420 Peroxidase superfamily protein 0.57 0.33 -0.3
106 AT2G26700 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 PINOID2 0.57 0.32 -0.31
107 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 0.57 0.33 -0.34
108 AT2G05910 Protein of unknown function (DUF567) 0.57 0.33 -0.31
109 AT3G21420 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 LATERAL BRANCHING OXIDOREDUCTASE 1 0.57 0.32 -0.32
110 AT1G25530 Transmembrane amino acid transporter family protein 0.56 0.32 -0.3
111 AT4G30080 auxin response factor 16 auxin response factor 16 0.56 0.3 -0.31
112 AT4G13030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.56 0.32 -0.32
113 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 0.56 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
114 C0050 8-Methylthio-n-octylglucosinolate - 8-Methylthiooctyl glucosinolate glucosinolate biosynthesis from hexahomomethionine -0.76 0.43 -0.44 C0050