AT5G61140 : -
Query Information
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AGICode AT5G61140
Description U5 small nuclear ribonucleoprotein helicase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G61140 U5 small nuclear ribonucleoprotein helicase 1 0.31 -0.31
2 AT1G03280 Transcription factor TFIIE, alpha subunit 0.79 0.32 -0.3
3 AT5G13280 aspartate kinase 1 ASPARTATE KINASE, aspartate kinase
1, ASPARTATE KINASE 1		 0.78 0.31 -0.32
4 AT5G58270 ABC transporter of the mitochondrion 3 ATP-binding cassette B25,
ARABIDOPSIS THALIANA ABC
TRANSPORTER OF THE MITOCHONDRION
3, ABC transporter of the
mitochondrion 3, STARIK 1		 0.78 0.32 -0.3
5 AT3G32940 RNA-binding KH domain-containing protein 0.77 0.31 -0.33
6 AT1G26110 decapping 5 decapping 5 0.77 0.32 -0.31
7 AT2G07360 SH3 domain-containing protein 0.76 0.27 -0.32
8 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 0.75 0.31 -0.32
9 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 0.74 0.32 -0.32
10 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.73 0.29 -0.31
11 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 0.73 0.32 -0.32
12 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.73 0.32 -0.32
13 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 0.72 0.3 -0.3
14 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.72 0.33 -0.32
15 AT2G25760 Protein kinase family protein 0.72 0.31 -0.33
16 AT5G56290 peroxin 5 ARABIDOPSIS PEROXIN 5, EMBRYO
DEFECTIVE 2790, peroxin 5		 0.72 0.31 -0.31
17 AT2G25730 unknown protein; Has 157 Blast hits to 144 proteins in 62
species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 21 (source:
NCBI BLink).		 0.72 0.29 -0.3
18 AT3G04605 transposable element gene 0.72 0.31 -0.28
19 AT2G18960 H(+)-ATPase 1 H(+)-ATPase 1, H(+)-ATPase 1, OPEN
STOMATA 2, PLASMA MEMBRANE PROTON
ATPASE		 0.72 0.32 -0.32
20 AT4G11160 Translation initiation factor 2, small GTP-binding protein 0.71 0.3 -0.31
21 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.71 0.3 -0.33
22 AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein 0.71 0.31 -0.31
23 AT3G63150 MIRO-related GTP-ase 2 CALCIUM BINDING GTP-ASE,
MIRO-related GTP-ase 2		 0.71 0.32 -0.33
24 AT4G32640 Sec23/Sec24 protein transport family protein 0.7 0.31 -0.3
25 AT2G48160 Tudor/PWWP/MBT domain-containing protein 0.69 0.34 -0.33
26 AT4G38270 galacturonosyltransferase 3 galacturonosyltransferase 3 0.69 0.31 -0.32
27 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.69 0.32 -0.33
28 AT2G28410 unknown protein; Has 18 Blast hits to 18 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.31 -0.31
29 AT1G23230 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23
(InterPro:IPR021629); Has 187 Blast hits to 184 proteins in
67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi
- 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.69 0.29 -0.31
30 AT1G12470 zinc ion binding 0.68 0.32 -0.31
31 AT3G62160 HXXXD-type acyl-transferase family protein -0.68 0.3 -0.32
32 AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein 0.68 0.29 -0.33
33 AT5G26330 Cupredoxin superfamily protein -0.68 0.31 -0.32
34 AT3G02260 auxin transport protein (BIG) ATTENUATED SHADE AVOIDANCE 1, BIG,
CORYMBOSA1, DARK OVER-EXPRESSION
OF CAB 1, LOW PHOSPHATE-RESISTANT
ROOT 1, TRANSPORT INHIBITOR
RESPONSE 3, UMBRELLA 1		 0.68 0.31 -0.31
35 AT5G06120 ARM repeat superfamily protein 0.68 0.3 -0.34
36 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.68 0.31 -0.32
37 AT1G07880 Protein kinase superfamily protein ATMPK13 -0.68 0.35 -0.35
38 AT3G16730 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex,
subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to
211 proteins in 82 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 hypersensitive to excess boron 2 -0.68 0.33 -0.29
39 AT5G11040 TRS120 AtTRS120, TRS120 0.67 0.33 -0.33
40 AT3G47380 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.67 0.32 -0.31
41 AT4G34500 Protein kinase superfamily protein -0.67 0.32 -0.3
42 AT2G23900 Pectin lyase-like superfamily protein -0.67 0.34 -0.32
43 AT3G07100 Sec23/Sec24 protein transport family protein AtSEC24A, ENDOPLASMIC RETICULUM
MORPHOLOGY 2, SEC24A		 0.67 0.33 -0.31
44 AT1G17680 tetratricopeptide repeat (TPR)-containing protein 0.67 0.32 -0.3
45 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.67 0.35 -0.32
46 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.67 0.32 -0.31
47 AT3G22070 proline-rich family protein -0.67 0.29 -0.31
48 AT5G48120 ARM repeat superfamily protein 0.67 0.32 -0.3
49 AT5G57410 Afadin/alpha-actinin-binding protein -0.67 0.32 -0.32
50 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.67 0.33 -0.32
51 AT5G24030 SLAC1 homologue 3 SLAC1 homologue 3 0.66 0.32 -0.3
52 AT5G61150 leo1-like family protein VERNALIZATION INDEPENDENCE 4 0.66 0.31 -0.31
53 AT4G21180 DnaJ / Sec63 Brl domains-containing protein ATERDJ2B 0.66 0.31 -0.32
54 AT1G69310 WRKY DNA-binding protein 57 ATWRKY57, WRKY DNA-binding protein
57		 0.66 0.31 -0.32
55 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.66 0.32 -0.31
56 AT1G36510 Nucleic acid-binding proteins superfamily 0.66 0.31 -0.32
57 AT3G56630 cytochrome P450, family 94, subfamily D, polypeptide 2 cytochrome P450, family 94,
subfamily D, polypeptide 2		 0.66 0.34 -0.31
58 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 0.66 0.32 -0.32
59 AT5G24010 Protein kinase superfamily protein 0.66 0.32 -0.33
60 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.66 0.3 -0.32
61 AT5G15400 U-box domain-containing protein 0.66 0.31 -0.34
62 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.3 -0.33
63 AT1G74480 RWP-RK domain-containing protein AtRKD2, RWP-RK domain containing 2 -0.65 0.33 -0.31
64 AT1G01960 SEC7-like guanine nucleotide exchange family protein embryo sac development arrest 10 0.65 0.32 -0.3
65 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.65 0.32 -0.31
66 AT1G11260 sugar transporter 1 SUGAR TRANSPORTER 1, sugar
transporter 1		 -0.65 0.3 -0.32
67 AT2G32700 LEUNIG_homolog LEUNIG_homolog, MUCILAGE-MODIFIED
1		 0.65 0.32 -0.32
68 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 -0.65 0.32 -0.33
69 AT1G59650 Protein of unknown function (DUF1336) CW14 0.65 0.32 -0.31
70 AT5G58040 homolog of yeast FIP1 [V] homolog of yeast FIP1 [V],
ATFIPS5, homolog of yeast FIP1
[V], FIPS5		 0.65 0.31 -0.32
71 AT3G15980 Coatomer, beta' subunit 0.64 0.32 -0.32
72 AT2G47150 NAD(P)-binding Rossmann-fold superfamily protein 0.64 0.32 -0.31
73 AT2G25760 Protein kinase family protein 0.64 0.31 -0.29
74 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.64 0.3 -0.35
75 AT1G07610 metallothionein 1C metallothionein 1C 0.64 0.32 -0.33
76 AT3G06450 HCO3- transporter family 0.64 0.3 -0.31
77 AT4G35890 winged-helix DNA-binding transcription factor family
protein		 0.64 0.3 -0.31
78 AT3G18480 CCAAT-displacement protein alternatively spliced product CCAAT-displacement protein
alternatively spliced product,
CCAAT-displacement protein
alternatively spliced product		 0.64 0.31 -0.31
79 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 0.64 0.33 -0.3
80 AT3G12170 Chaperone DnaJ-domain superfamily protein -0.64 0.32 -0.29
81 AT1G69400 Transducin/WD40 repeat-like superfamily protein -0.64 0.33 -0.3
82 AT3G25840 Protein kinase superfamily protein 0.64 0.3 -0.31
83 AT1G50470 F-box associated ubiquitination effector family protein 0.63 0.29 -0.31
84 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.63 0.29 -0.31
85 AT1G17720 Protein phosphatase 2A, regulatory subunit PR55 ATB BETA 0.63 0.31 -0.32
86 AT2G28390 SAND family protein 0.63 0.3 -0.32
87 AT5G58410 HEAT/U-box domain-containing protein 0.63 0.32 -0.32
88 AT5G43710 Glycosyl hydrolase family 47 protein 0.63 0.32 -0.3
89 AT1G28240 Protein of unknown function (DUF616) 0.63 0.33 -0.32
90 AT3G60390 homeobox-leucine zipper protein 3 homeobox-leucine zipper protein 3 -0.63 0.3 -0.31
91 AT2G20620 Protein of unknown function (DUF626) -0.63 0.32 -0.32
92 AT1G35740 pseudogene, similar to putative beta-1,3-glucan synthase,
blastp match of 57% identity and 2.1e-14 P-value to
GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative
beta-1,3-glucan synthase {Nicotiana alata}		 -0.63 0.31 -0.34
93 ATMG00070 NADH dehydrogenase subunit 9 NADH dehydrogenase subunit 9 0.63 0.31 -0.31
94 AT5G25520 SPOC domain / Transcription elongation factor S-II protein 0.63 0.29 -0.3
95 AT1G71820 SEC6 SEC6 0.63 0.32 -0.31
96 AT2G10760 transposable element gene 0.62 0.32 -0.32
97 AT5G15700 DNA/RNA polymerases superfamily protein 0.62 0.29 -0.3
98 AT5G44560 SNF7 family protein VPS2.2 -0.62 0.33 -0.33
99 AT4G16280 RNA binding;abscisic acid binding FCA 0.62 0.34 -0.29
100 AT1G61850 phospholipases;galactolipases 0.62 0.31 -0.31
101 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 -0.62 0.3 -0.32
102 AT3G27200 Cupredoxin superfamily protein -0.62 0.31 -0.3
103 AT2G32430 Galactosyltransferase family protein -0.62 0.32 -0.32
104 AT1G50590 RmlC-like cupins superfamily protein -0.62 0.31 -0.31
105 AT5G27970 ARM repeat superfamily protein 0.62 0.3 -0.3
106 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 -0.62 0.35 -0.31
107 AT4G36140 disease resistance protein (TIR-NBS-LRR class), putative 0.62 0.3 -0.33
108 AT5G28410 unknown protein; Has 8 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.3 -0.3
109 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.3 -0.34
110 AT3G11600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.3 -0.3
111 AT5G07680 NAC domain containing protein 80 Arabidopsis NAC domain containing
protein 79, NAC domain containing
protein 80, ATNAC4, NAC domain
containing protein 80		 0.62 0.32 -0.29
112 AT4G14550 indole-3-acetic acid inducible 14 indole-3-acetic acid inducible 14,
SOLITARY ROOT		 -0.62 0.32 -0.31
113 AT1G21130 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 4		 -0.62 0.3 -0.32
114 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.61 0.32 -0.31
115 AT1G16330 cyclin b3;1 cyclin b3;1 -0.61 0.31 -0.31
116 AT3G04800 translocase inner membrane subunit 23-3 translocase inner membrane subunit
23-3, translocase inner membrane
subunit 23-3		 -0.6 0.31 -0.32
117 AT1G61840 Cysteine/Histidine-rich C1 domain family protein -0.6 0.32 -0.32
118 AT5G62420 NAD(P)-linked oxidoreductase superfamily protein -0.6 0.33 -0.3
119 AT5G19240 Glycoprotein membrane precursor GPI-anchored -0.6 0.33 -0.32
120 AT1G17040 SH2 domain protein A ARABIDOPSIS THALIANA SH2 DOMAIN
PROTEIN A, SH2 domain protein A,
STAT-TYPE LINKER-SH2 DOMAIN FACTOR
A		 -0.6 0.3 -0.31
121 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 -0.6 0.31 -0.32
122 AT5G05840 Protein of unknown function (DUF620) -0.59 0.31 -0.32
123 AT3G15550 unknown protein; Has 25732 Blast hits to 16979 proteins in
961 species: Archae - 144; Bacteria - 1801; Metazoa -
12681; Fungi - 1868; Plants - 912; Viruses - 94; Other
Eukaryotes - 8232 (source: NCBI BLink).		 -0.59 0.31 -0.33
124 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 -0.59 0.33 -0.31
125 AT5G26920 Cam-binding protein 60-like G Cam-binding protein 60-like G -0.59 0.32 -0.32
126 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 -0.59 0.31 -0.31
127 AT4G15200 formin 3 formin 3, formin 3 -0.59 0.31 -0.31
128 AT1G15890 Disease resistance protein (CC-NBS-LRR class) family -0.58 0.34 -0.34
129 AT5G23400 Leucine-rich repeat (LRR) family protein -0.58 0.32 -0.32
130 AT4G25480 dehydration response element B1A ATCBF3, C-REPEAT BINDING FACTOR
3, dehydration response element
B1A		 -0.58 0.32 -0.3
131 AT2G36410 Family of unknown function (DUF662) -0.58 0.3 -0.3
132 AT1G75800 Pathogenesis-related thaumatin superfamily protein -0.58 0.28 -0.3
133 AT5G06610 Protein of unknown function (DUF620) -0.57 0.32 -0.32
134 AT4G39320 microtubule-associated protein-related -0.57 0.32 -0.31
135 AT5G48740 Leucine-rich repeat protein kinase family protein -0.57 0.33 -0.33
136 AT3G50890 homeobox protein 28 homeobox protein 28, homeobox
protein 28, ZINC FINGER
HOMEODOMAIN 7		 -0.57 0.32 -0.3
137 AT1G10720 BSD domain-containing protein -0.57 0.31 -0.34
138 AT4G14630 germin-like protein 9 germin-like protein 9 -0.57 0.33 -0.31