AT5G60870 : RCC1/UVR8/GEF-like 3
Query Information
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AGICode AT5G60870
Description Regulator of chromosome condensation (RCC1) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G60870 Regulator of chromosome condensation (RCC1) family protein RCC1/UVR8/GEF-like 3 1 0.32 -0.32
2 AT5G40530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.77 0.31 -0.32
3 AT4G33550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.75 0.3 -0.31
4 AT2G38960 endoplasmic reticulum oxidoreductins 2 endoplasmic reticulum
oxidoreductins 2, endoplasmic
reticulum oxidoreductins 2		 0.75 0.32 -0.31
5 AT3G10050 L-O-methylthreonine resistant 1 L-O-methylthreonine resistant 1 0.75 0.32 -0.33
6 AT2G31740 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.33 -0.3
7 AT3G55020 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.75 0.31 -0.3
8 AT2G41190 Transmembrane amino acid transporter family protein -0.74 0.31 -0.31
9 AT3G26740 CCR-like CCR-like -0.74 0.33 -0.3
10 AT1G79520 Cation efflux family protein -0.73 0.34 -0.3
11 AT4G33530 K+ uptake permease 5 K+ uptake permease 5 0.73 0.32 -0.3
12 AT1G06460 alpha-crystallin domain 32.1 ALPHA-CRYSTALLIN DOMAIN 31.2,
alpha-crystallin domain 32.1		 -0.73 0.33 -0.34
13 AT1G64110 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 DUO1-activated ATPase 1 -0.72 0.3 -0.3
14 AT1G78450 SOUL heme-binding family protein 0.72 0.31 -0.32
15 AT5G57490 voltage dependent anion channel 4 ARABIDOPSIS THALIANA VOLTAGE
DEPENDENT ANION CHANNEL 4, voltage
dependent anion channel 4		 0.72 0.32 -0.3
16 AT3G02480 Late embryogenesis abundant protein (LEA) family protein -0.72 0.33 -0.31
17 AT5G09380 RNA polymerase III RPC4 0.72 0.3 -0.35
18 AT3G52460 hydroxyproline-rich glycoprotein family protein 0.71 0.32 -0.32
19 AT5G03190 conserved peptide upstream open reading frame 47 conserved peptide upstream open
reading frame 47		 -0.71 0.33 -0.32
20 AT4G14270 Protein containing PAM2 motif which mediates interaction
with the PABC domain of polyadenyl binding proteins.		 -0.71 0.3 -0.31
21 AT5G49990 Xanthine/uracil permease family protein -0.7 0.35 -0.32
22 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.7 0.32 -0.32
23 AT5G51890 Peroxidase superfamily protein -0.7 0.33 -0.31
24 AT3G05320 O-fucosyltransferase family protein 0.69 0.32 -0.33
25 AT3G57650 lysophosphatidyl acyltransferase 2 lysophosphatidyl acyltransferase 2 0.69 0.3 -0.3
26 AT2G20770 GCR2-like 2 GCR2-like 2 -0.69 0.33 -0.34
27 AT3G02280 Flavodoxin family protein 0.68 0.33 -0.33
28 AT1G75900 GDSL-like Lipase/Acylhydrolase superfamily protein -0.68 0.31 -0.3
29 AT3G05260 NAD(P)-binding Rossmann-fold superfamily protein -0.68 0.34 -0.31
30 AT5G23750 Remorin family protein -0.67 0.33 -0.3
31 AT1G01250 Integrase-type DNA-binding superfamily protein -0.67 0.32 -0.32
32 AT4G21410 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 cysteine-rich RLK (RECEPTOR-like
protein kinase) 29		 0.67 0.34 -0.33
33 AT4G24830 arginosuccinate synthase family 0.67 0.31 -0.31
34 AT2G31680 RAB GTPase homolog A5D RAB GTPase homolog A5D, RAB GTPase
homolog A5D		 0.66 0.32 -0.33
35 AT3G47160 RING/U-box superfamily protein -0.66 0.31 -0.33
36 AT5G35700 fimbrin-like protein 2 fimbrin-like protein 2, FIMBRIN5 0.66 0.33 -0.33
37 AT3G06040 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.66 0.31 -0.31
38 AT1G69210 Uncharacterised protein family UPF0090 0.66 0.32 -0.32
39 AT4G22740 glycine-rich protein -0.66 0.31 -0.31
40 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein 0.66 0.33 -0.33
41 AT5G30490 CONTAINS InterPro DOMAIN/s: Craniofacial development
protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast
hits to 324 proteins in 149 species: Archae - 0; Bacteria -
18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0;
Other Eukaryotes - 53 (source: NCBI BLink).		 0.66 0.3 -0.31
42 AT3G22940 F-box associated ubiquitination effector family protein -0.66 0.3 -0.32
43 AT2G35390 Phosphoribosyltransferase family protein 0.66 0.33 -0.3
44 AT4G16850 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.65 0.32 -0.31
45 AT3G16920 chitinase-like protein 2 ATCTL2, chitinase-like protein 2 -0.65 0.31 -0.3
46 AT5G19180 E1 C-terminal related 1 E1 C-terminal related 1 0.65 0.31 -0.31
47 AT1G56600 galactinol synthase 2 galactinol synthase 2, galactinol
synthase 2		 -0.65 0.33 -0.34
48 AT1G76020 Thioredoxin superfamily protein -0.65 0.31 -0.29
49 AT2G37160 Transducin/WD40 repeat-like superfamily protein 0.65 0.32 -0.3
50 AT3G23660 Sec23/Sec24 protein transport family protein 0.65 0.32 -0.31
51 AT3G53540 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in
206 species: Archae - 2; Bacteria - 409; Metazoa - 304;
Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes -
485 (source: NCBI BLink).		 -0.65 0.31 -0.3
52 AT5G06740 Concanavalin A-like lectin protein kinase family protein 0.65 0.3 -0.3
53 AT3G21660 UBX domain-containing protein -0.64 0.31 -0.3
54 AT2G04305 Magnesium transporter CorA-like family protein 0.64 0.3 -0.32
55 AT3G45670 Protein kinase superfamily protein 0.64 0.3 -0.32
56 AT1G10760 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GWD, GWD1, STARCH EXCESS 1, SOP,
SOP1		 -0.64 0.31 -0.32
57 AT2G36390 starch branching enzyme 2.1 BRANCHING ENZYME 3, starch
branching enzyme 2.1		 -0.64 0.32 -0.3
58 AT3G23340 casein kinase I-like 10 casein kinase I-like 10 -0.64 0.32 -0.29
59 AT3G22440 FRIGIDA-like protein -0.64 0.29 -0.3
60 AT5G60720 Protein of unknown function, DUF547 -0.64 0.32 -0.31
61 AT3G08960 ARM repeat superfamily protein 0.63 0.31 -0.3
62 AT5G40040 60S acidic ribosomal protein family 0.63 0.31 -0.3
63 AT3G01590 Galactose mutarotase-like superfamily protein -0.63 0.32 -0.3
64 AT1G56170 nuclear factor Y, subunit C2 ATHAP5B, HAP5B, nuclear factor Y,
subunit C2		 -0.63 0.31 -0.32
65 AT3G13130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte; Has
140 Blast hits to 132 proteins in 41 species: Archae - 2;
Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51;
Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).		 -0.63 0.29 -0.3
66 AT3G52420 outer envelope membrane protein 7 OUTER ENVELOPE MEMBRANE PROTEIN 7,
outer envelope membrane protein 7		 0.63 0.35 -0.32
67 AT3G58180 ARM repeat superfamily protein 0.63 0.3 -0.31
68 AT5G52310 low-temperature-responsive protein 78 (LTI78) /
desiccation-responsive protein 29A (RD29A)		 COLD REGULATED 78, LTI140,
LOW-TEMPERATURE-INDUCED 78,
RESPONSIVE TO DESSICATION 29A		 -0.62 0.32 -0.3
69 AT5G12470 Protein of unknown function (DUF3411) 0.62 0.29 -0.33
70 AT5G08590 SNF1-related protein kinase 2.1 ARABIDOPSIS SERINE/THREONINE
KINASE 2, ARABIDOPSIS SKP1-LIKE1,
SNRK2-1, SNF1-related protein
kinase 2.1, SRK2G		 -0.62 0.32 -0.32
71 AT1G55460 DNA/RNA-binding protein Kin17, conserved region -0.62 0.31 -0.3
72 AT3G59630 diphthamide synthesis DPH2 family protein 0.62 0.31 -0.31
73 AT2G33000 ubiquitin-associated (UBA)/TS-N domain-containing
protein-related		 -0.62 0.32 -0.3
74 AT1G47660 unknown protein; Has 5165 Blast hits to 2753 proteins in
450 species: Archae - 12; Bacteria - 1193; Metazoa - 731;
Fungi - 361; Plants - 761; Viruses - 176; Other Eukaryotes
- 1931 (source: NCBI BLink).		 0.62 0.3 -0.31
75 AT2G29380 highly ABA-induced PP2C gene 3 highly ABA-induced PP2C gene 3 -0.62 0.3 -0.32
76 AT1G78815 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 7 0.62 0.31 -0.31
77 AT5G08080 syntaxin of plants 132 ATSYP132, syntaxin of plants 132 0.62 0.33 -0.31
78 AT1G16310 Cation efflux family protein -0.61 0.3 -0.3
79 AT4G33810 Glycosyl hydrolase superfamily protein -0.61 0.31 -0.32
80 AT3G18230 Octicosapeptide/Phox/Bem1p family protein 0.61 0.31 -0.31
81 AT5G10290 leucine-rich repeat transmembrane protein kinase family
protein		 0.61 0.32 -0.32
82 AT4G09630 Protein of unknown function (DUF616) 0.61 0.33 -0.31
83 AT4G37970 cinnamyl alcohol dehydrogenase 6 ATCAD6, cinnamyl alcohol
dehydrogenase 6		 -0.6 0.33 -0.32
84 AT3G02125 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: pollen tube; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G39200.1); Has 2247 Blast hits to 1434 proteins in
202 species: Archae - 4; Bacteria - 111; Metazoa - 942;
Fungi - 239; Plants - 140; Viruses - 37; Other Eukaryotes -
774 (source: NCBI BLink).		 -0.6 0.32 -0.32
85 AT1G64690 branchless trichome BRANCHLESS TRICHOMES -0.6 0.31 -0.32
86 AT5G64110 Peroxidase superfamily protein -0.6 0.32 -0.34
87 AT5G66560 Phototropic-responsive NPH3 family protein -0.59 0.32 -0.3
88 AT1G41797 transposable element gene -0.59 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.84 0.45 -0.45 C0123
90 C0145 Maltotetraose - Maltotetraose starch degradation II 0.74 0.45 -0.46 C0145
91 C0143 Maltitol - - starch degradation II -0.71 0.46 -0.43
92 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		-0.71 0.32 -0.28 C0189
93 C0146 Mannitol D-Mannitol Mannitol mannitol degradation II -0.67 0.43 -0.48 C0146
94 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.64 0.34 -0.32 C0137