AT5G59950 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT5G59950
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.32 -0.31
2 AT5G04670 Enhancer of polycomb-like transcription factor protein 0.72 0.31 -0.32
3 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.7 0.34 -0.32
4 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.7 0.3 -0.35
5 AT1G57600 MBOAT (membrane bound O-acyl transferase) family protein -0.68 0.31 -0.32
6 AT5G15170 tyrosyl-DNA phosphodiesterase-related tyrosyl-DNA phosphodiesterase 1 -0.67 0.32 -0.3
7 AT3G53610 RAB GTPase homolog 8 RAB GTPase homolog 8, AtRab8B,
AtRABE1a, RAB GTPase homolog 8		 0.66 0.31 -0.32
8 AT2G42450 alpha/beta-Hydrolases superfamily protein -0.66 0.32 -0.3
9 AT1G13020 eukaryotic initiation factor 4B2 eukaryotic initiation factor 4B2 0.66 0.32 -0.33
10 AT4G38960 B-box type zinc finger family protein 0.66 0.32 -0.3
11 AT4G14900 FRIGIDA-like protein 0.65 0.3 -0.31
12 AT5G37420 Family of unknown function (DUF577) -0.64 0.31 -0.33
13 AT3G07390 auxin-responsive family protein Auxin-Induced in Root cultures 12 0.64 0.3 -0.33
14 AT3G60250 casein kinase II beta chain 3 casein kinase II beta chain 3 0.64 0.33 -0.3
15 AT5G48450 SKU5 similar 3 SKU5 similar 3 -0.64 0.3 -0.31
16 AT5G56140 RNA-binding KH domain-containing protein 0.64 0.3 -0.31
17 AT3G50160 Plant protein of unknown function (DUF247) -0.63 0.32 -0.33
18 AT5G20110 Dynein light chain type 1 family protein 0.62 0.31 -0.3
19 AT5G37780 calmodulin 1 ACAM-1, calmodulin 1, TOUCH 1 0.62 0.3 -0.32
20 AT2G13680 callose synthase 5 ARABIDOPSIS THALIANA GLUCAN
SYNTHASE-LIKE 2, callose synthase
5, GLUCAN SYNTHASE-LIKE 2		 -0.62 0.31 -0.32
21 AT4G03480 Ankyrin repeat family protein 0.62 0.31 -0.31
22 AT2G31380 salt tolerance homologue salt tolerance homologue 0.61 0.32 -0.33
23 AT5G02840 LHY/CCA1-like 1 LHY/CCA1-like 1 0.61 0.31 -0.34
24 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.61 0.32 -0.3
25 AT5G24110 WRKY DNA-binding protein 30 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 30, WRKY
DNA-binding protein 30		 0.61 0.32 -0.34
26 AT4G16430 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.61 0.35 -0.34
27 AT3G27950 GDSL-like Lipase/Acylhydrolase superfamily protein -0.61 0.3 -0.3
28 AT4G17090 chloroplast beta-amylase BETA-AMYLASE 3, BETA-AMYLASE 8,
chloroplast beta-amylase		 0.6 0.33 -0.31
29 AT1G30990 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.32 -0.3
30 AT1G10980 Lung seven transmembrane receptor family protein -0.6 0.33 -0.31
31 AT5G59030 copper transporter 1 copper transporter 1 0.6 0.31 -0.3
32 AT4G35530 phosphatidylinositolglycan-related -0.6 0.33 -0.31
33 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 0.59 0.32 -0.31
34 AT2G20880 Integrase-type DNA-binding superfamily protein AtERF53, ERF domain 53 -0.59 0.34 -0.34
35 AT5G63640 ENTH/VHS/GAT family protein 0.59 0.32 -0.33
36 AT5G27100 glutamate receptor 2.1 ARABIDOPSIS THALIANA GLUTAMATE
RECEPTOR 2.1, glutamate receptor
2.1		 -0.59 0.31 -0.32
37 AT3G32100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.33 -0.31
38 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 0.59 0.34 -0.31
39 AT2G46940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits
to 141 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.32 -0.29
40 AT2G28440 proline-rich family protein -0.58 0.31 -0.31
41 AT5G04330 Cytochrome P450 superfamily protein -0.58 0.32 -0.31
42 AT1G17370 oligouridylate binding protein 1B oligouridylate binding protein 1B 0.58 0.33 -0.32
43 AT1G06710 Tetratricopeptide repeat (TPR)-like superfamily protein 0.57 0.33 -0.33
44 AT1G67370 DNA-binding HORMA family protein ASYNAPTIC 1, ATASY1 0.57 0.32 -0.32
45 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.32 -0.32
46 AT4G01450 nodulin MtN21 /EamA-like transporter family protein -0.57 0.3 -0.32
47 AT3G30160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G35320.1); Has 9 Blast hits to 9 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.33 -0.32
48 AT4G28610 phosphate starvation response 1 AtPHR1, phosphate starvation
response 1		 0.56 0.3 -0.33
49 AT3G13070 CBS domain-containing protein / transporter associated
domain-containing protein		 -0.56 0.3 -0.31
50 AT3G04605 transposable element gene -0.56 0.33 -0.32
51 AT2G21130 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.56 0.33 -0.29
52 AT2G13550 unknown protein; Has 23 Blast hits to 20 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 9 (source: NCBI
BLink).		 -0.56 0.32 -0.33
53 AT1G08370 decapping 1 ATDCP1, decapping 1 0.55 0.3 -0.31
54 AT2G17870 cold shock domain protein 3 ARABIDOPSIS COLD SHOCK DOMAIN
PROTEIN 3, cold shock domain
protein 3		 0.55 0.33 -0.32
55 AT5G20700 Protein of unknown function (DUF581) -0.55 0.31 -0.32
56 AT3G02670 Glycine-rich protein family 0.55 0.33 -0.31
57 AT5G45080 phloem protein 2-A6 phloem protein 2-A6, phloem
protein 2-A6		 -0.55 0.3 -0.32
58 AT3G55450 PBS1-like 1 PBS1-like 1 0.54 0.32 -0.3
59 AT1G34270 Exostosin family protein 0.54 0.31 -0.3
60 AT3G42220 transposable element gene 0.54 0.32 -0.31
61 AT1G31760 SWIB/MDM2 domain superfamily protein 0.54 0.32 -0.3
62 AT2G21770 cellulose synthase A9 CESA09, cellulose synthase A9 -0.54 0.32 -0.3
63 AT4G07960 Cellulose-synthase-like C12 Cellulose-synthase-like C12,
CELLULOSE-SYNTHASE LIKE C12,
Cellulose-synthase-like C12		 -0.54 0.32 -0.33
64 AT5G64570 beta-D-xylosidase 4 ARABIDOPSIS THALIANA
BETA-D-XYLOSIDASE 4,
beta-D-xylosidase 4		 -0.54 0.29 -0.32
65 AT4G32170 cytochrome P450, family 96, subfamily A, polypeptide 2 cytochrome P450, family 96,
subfamily A, polypeptide 2		 -0.53 0.31 -0.3
66 AT4G07940 Protein of unknown function (DUF3245) -0.53 0.32 -0.3
67 AT5G21150 Argonaute family protein ARGONAUTE 9 -0.52 0.32 -0.3
68 AT1G24100 UDP-glucosyl transferase 74B1 UDP-glucosyl transferase 74B1 -0.52 0.31 -0.34
69 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 -0.52 0.33 -0.33
70 AT2G06700 transposable element gene -0.52 0.34 -0.3
71 AT1G01290 cofactor of nitrate reductase and xanthine dehydrogenase 3 cofactor of nitrate reductase and
xanthine dehydrogenase 3		 -0.52 0.33 -0.32
72 AT5G46940 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.52 0.32 -0.31
73 AT3G47170 HXXXD-type acyl-transferase family protein -0.51 0.32 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
74 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		0.81 0.45 -0.48 C0228
75 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.77 0.43 -0.46 C0131
76 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.71 0.45 -0.46 C0105
77 C0145 Maltotetraose - Maltotetraose starch degradation II -0.7 0.45 -0.45 C0145