AT5G60040 : nuclear RNA polymerase C1
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AGICode AT5G60040
Description nuclear RNA polymerase C1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 1 0.31 -0.31
2 AT1G15870 Mitochondrial glycoprotein family protein 0.77 0.33 -0.32
3 AT1G50760 Aminotransferase-like, plant mobile domain family protein 0.75 0.33 -0.31
4 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.75 0.32 -0.31
5 AT5G51320 transposable element gene -0.74 0.3 -0.31
6 AT5G10810 enhancer of rudimentary protein, putative ARABIDOPSIS THALIANA ENHANCER OF
RUDIMENTARY HOMOLOGUE, ENHANCER OF
RUDIMENTARY HOMOLOGUE
-0.74 0.3 -0.3
7 AT3G66656 AGAMOUS-like 91 AGAMOUS-like 91 -0.74 0.3 -0.3
8 AT4G16920 Disease resistance protein (TIR-NBS-LRR class) family 0.73 0.29 -0.33
9 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.73 0.31 -0.33
10 AT3G49890 unknown protein; Has 27 Blast hits to 27 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).
0.73 0.3 -0.31
11 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.73 0.31 -0.31
12 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
EMBRYO DEFECTIVE 2788 0.73 0.32 -0.31
13 AT1G56690 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.33 -0.3
14 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).
0.72 0.31 -0.33
15 AT2G22410 SLOW GROWTH 1 SLOW GROWTH 1 0.72 0.32 -0.32
16 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 0.72 0.33 -0.33
17 AT5G09330 NAC domain containing protein 82 NAC domain containing protein 82,
NAC domain containing protein 82,
VND-interacting 1
0.72 0.3 -0.32
18 AT1G10950 transmembrane nine 1 AtTMN1, transmembrane nine 1 0.72 0.3 -0.31
19 AT2G40740 WRKY DNA-binding protein 55 WRKY DNA-BINDING PROTEIN 55, WRKY
DNA-binding protein 55
0.72 0.31 -0.3
20 AT1G74820 RmlC-like cupins superfamily protein 0.71 0.31 -0.31
21 AT4G21150 ribophorin II (RPN2) family protein HAPLESS 6 0.71 0.31 -0.31
22 AT5G18180 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.71 0.34 -0.29
23 AT5G61140 U5 small nuclear ribonucleoprotein helicase 0.71 0.31 -0.33
24 AT1G50470 F-box associated ubiquitination effector family protein 0.7 0.32 -0.33
25 AT5G28410 unknown protein; Has 8 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
0.7 0.32 -0.3
26 AT1G79990 structural molecules 0.7 0.3 -0.32
27 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
MINIYO 0.69 0.33 -0.3
28 AT2G10760 transposable element gene 0.69 0.33 -0.33
29 AT5G58270 ABC transporter of the mitochondrion 3 ATP-binding cassette B25,
ARABIDOPSIS THALIANA ABC
TRANSPORTER OF THE MITOCHONDRION
3, ABC transporter of the
mitochondrion 3, STARIK 1
0.69 0.35 -0.31
30 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17
0.69 0.3 -0.33
31 AT2G01790 TRAF-like family protein 0.69 0.32 -0.29
32 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein
0.69 0.32 -0.31
33 ATMG00670 hypothetical protein ORF275 0.69 0.33 -0.31
34 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 0.69 0.33 -0.3
35 AT1G07160 Protein phosphatase 2C family protein 0.69 0.3 -0.31
36 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.69 0.3 -0.32
37 AT5G13150 exocyst subunit exo70 family protein C1 exocyst subunit exo70 family
protein C1, exocyst subunit exo70
family protein C1
0.69 0.29 -0.31
38 AT2G14810 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
0.68 0.31 -0.31
39 AT1G75930 extracellular lipase 6 extracellular lipase 6 -0.68 0.31 -0.31
40 AT1G17720 Protein phosphatase 2A, regulatory subunit PR55 ATB BETA 0.68 0.31 -0.3
41 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.68 0.33 -0.32
42 AT4G28400 Protein phosphatase 2C family protein -0.68 0.34 -0.31
43 AT1G62440 leucine-rich repeat/extensin 2 leucine-rich repeat/extensin 2 0.68 0.32 -0.32
44 AT5G48120 ARM repeat superfamily protein 0.68 0.32 -0.32
45 AT5G07680 NAC domain containing protein 80 Arabidopsis NAC domain containing
protein 79, NAC domain containing
protein 80, ATNAC4, NAC domain
containing protein 80
0.68 0.31 -0.3
46 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 0.68 0.33 -0.31
47 AT3G43630 Vacuolar iron transporter (VIT) family protein 0.68 0.33 -0.32
48 AT3G62360 Carbohydrate-binding-like fold 0.67 0.31 -0.3
49 AT2G48160 Tudor/PWWP/MBT domain-containing protein 0.67 0.31 -0.33
50 AT2G11150 transposable element gene 0.67 0.33 -0.3
51 AT5G06460 ubiquitin activating enzyme 2 ARABIDOPSIS THALIANA UBIQUITIN
ACTIVATING ENZYME 2, ubiquitin
activating enzyme 2
0.67 0.31 -0.32
52 AT3G09530 exocyst subunit exo70 family protein H3 exocyst subunit exo70 family
protein H3, exocyst subunit exo70
family protein H3
0.67 0.32 -0.32
53 AT1G73240 CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup
(InterPro:IPR019049); Has 36 Blast hits to 36 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.67 0.31 -0.32
54 AT4G34850 Chalcone and stilbene synthase family protein LESS ADHESIVE POLLEN 5 0.67 0.31 -0.33
55 AT4G22650 CONTAINS InterPro DOMAIN/s: Plant lipid transfer
protein/seed storage/trypsin-alpha amylase inhibitor
(InterPro:IPR003612); BEST Arabidopsis thaliana protein
match is: Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein
(TAIR:AT4G22640.1); Has 25 Blast hits to 25 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.67 0.33 -0.32
56 AT5G13560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast
hits to 8846 proteins in 811 species: Archae - 217;
Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants -
528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI
BLink).
0.66 0.33 -0.32
57 AT5G27050 AGAMOUS-like 101 AGAMOUS-like 101 0.66 0.35 -0.32
58 AT4G34500 Protein kinase superfamily protein -0.66 0.3 -0.3
59 AT1G05550 Protein of unknown function (DUF295) 0.66 0.31 -0.33
60 AT3G15590 Tetratricopeptide repeat (TPR)-like superfamily protein 0.66 0.34 -0.32
61 AT1G17960 Threonyl-tRNA synthetase 0.66 0.35 -0.29
62 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER
0.66 0.3 -0.31
63 AT5G37970 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
-0.66 0.33 -0.31
64 AT3G04605 transposable element gene 0.66 0.32 -0.31
65 AT3G28770 Protein of unknown function (DUF1216) -0.66 0.3 -0.3
66 AT2G05120 Nucleoporin, Nup133/Nup155-like 0.66 0.31 -0.3
67 AT4G03750 transposable element gene 0.66 0.33 -0.34
68 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE
-0.65 0.31 -0.32
69 AT3G43500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G42080.1); Has 8 Blast hits to
8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
-0.65 0.31 -0.32
70 AT3G22070 proline-rich family protein -0.65 0.31 -0.31
71 AT1G20960 U5 small nuclear ribonucleoprotein helicase, putative embryo defective 1507 0.65 0.32 -0.32
72 AT5G44880 transposable element gene -0.65 0.31 -0.32
73 AT1G50340 Plant invertase/pectin methylesterase inhibitor superfamily
protein
0.65 0.3 -0.34
74 AT5G53800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
0.64 0.31 -0.33
75 AT3G62160 HXXXD-type acyl-transferase family protein -0.64 0.31 -0.31
76 AT5G19700 MATE efflux family protein 0.64 0.31 -0.32
77 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
-0.64 0.31 -0.29
78 AT2G45460 SMAD/FHA domain-containing protein 0.64 0.32 -0.32
79 AT1G26110 decapping 5 decapping 5 0.64 0.32 -0.32
80 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.64 0.32 -0.32
81 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein 0.64 0.34 -0.31
82 AT1G14390 Leucine-rich repeat protein kinase family protein 0.64 0.29 -0.31
83 AT4G15200 formin 3 formin 3, formin 3 -0.64 0.31 -0.32
84 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4
0.64 0.32 -0.29
85 AT1G48970 NagB/RpiA/CoA transferase-like superfamily protein 0.64 0.3 -0.31
86 AT5G06480 Immunoglobulin E-set superfamily protein -0.63 0.31 -0.3
87 AT2G16835 Aquaporin-like superfamily protein 0.63 0.31 -0.32
88 AT1G06440 Ubiquitin carboxyl-terminal hydrolase family protein 0.63 0.35 -0.33
89 AT1G68270 AMP-dependent synthetase and ligase family protein 0.63 0.3 -0.29
90 AT2G07360 SH3 domain-containing protein 0.63 0.32 -0.31
91 AT5G47520 RAB GTPase homolog A5A RAB GTPase homolog A5A, RAB GTPase
homolog A5A
-0.63 0.3 -0.32
92 AT1G64790 ILITYHIA ILITYHIA 0.63 0.3 -0.31
93 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).
-0.63 0.31 -0.3
94 AT1G64320 myosin heavy chain-related 0.63 0.32 -0.32
95 AT1G17790 DNA-binding bromodomain-containing protein -0.63 0.29 -0.32
96 AT5G24390 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.62 0.34 -0.29
97 AT1G69630 F-box/RNI-like superfamily protein -0.62 0.3 -0.32
98 AT5G63135 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
-0.62 0.33 -0.32
99 AT5G08100 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein
asparaginase A1 -0.62 0.33 -0.31
100 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.62 0.31 -0.3
101 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 -0.62 0.33 -0.3
102 AT4G13230 Late embryogenesis abundant protein (LEA) family protein -0.61 0.3 -0.31
103 AT2G34470 urease accessory protein G PSKF109, urease accessory protein
G
-0.61 0.31 -0.29
104 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).
-0.61 0.33 -0.32
105 ATMG00680 hypothetical protein ORF122C -0.61 0.32 -0.33
106 AT3G01920 DHBP synthase RibB-like alpha/beta domain -0.6 0.33 -0.29
107 AT2G21240 basic pentacysteine 4 BASIC PENTACYSTEINE 4, BBR, basic
pentacysteine 4
-0.6 0.29 -0.33
108 AT1G05450 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein
-0.6 0.3 -0.32
109 AT2G33530 serine carboxypeptidase-like 46 serine carboxypeptidase-like 46 -0.6 0.32 -0.3
110 AT4G20420 Tapetum specific protein TAP35/TAP44 -0.6 0.33 -0.31
111 AT1G54110 Membrane fusion protein Use1 -0.6 0.31 -0.31
112 AT1G53060 Legume lectin family protein -0.6 0.29 -0.32
113 AT4G31615 Transcriptional factor B3 family protein -0.6 0.31 -0.32
114 AT1G15530 Concanavalin A-like lectin protein kinase family protein -0.59 0.31 -0.32
115 AT1G32270 syntaxin, putative ATSYP24, SYNTAXIN 24 -0.59 0.32 -0.31
116 AT1G47810 F-box and associated interaction domains-containing protein -0.59 0.31 -0.3
117 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
-0.59 0.3 -0.35
118 AT5G43830 Aluminium induced protein with YGL and LRDR motifs -0.58 0.32 -0.32
119 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23
-0.58 0.32 -0.33
120 AT5G39370 Curculin-like (mannose-binding) lectin family protein -0.58 0.31 -0.3
121 AT2G36920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02870.1); Has 13 Blast hits to 11
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
-0.58 0.33 -0.3
122 AT5G47260 ATP binding;GTP binding;nucleotide
binding;nucleoside-triphosphatases
-0.58 0.31 -0.3
123 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
-0.58 0.33 -0.32
124 AT3G43060 transposable element gene -0.58 0.32 -0.3
125 AT2G11235 transposable element gene -0.58 0.32 -0.34
126 AT5G62610 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
-0.58 0.32 -0.31
127 AT4G30520 Leucine-rich repeat protein kinase family protein SENESCENCE-ASSOCIATED
RECEPTOR-LIKE KINASE
-0.57 0.35 -0.32
128 AT1G35647 transposable element gene -0.57 0.31 -0.32
129 AT5G27810 MADS-box transcription factor family protein -0.57 0.32 -0.32
130 AT5G65590 Dof-type zinc finger DNA-binding family protein -0.57 0.34 -0.31
131 AT3G59130 Cysteine/Histidine-rich C1 domain family protein -0.57 0.34 -0.3
132 AT2G25230 myb domain protein 100 myb domain protein 100, myb domain
protein 100
-0.56 0.35 -0.32
133 AT5G26840 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
-0.56 0.31 -0.3
134 AT1G28327 unknown protein; Has 52 Blast hits to 52 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
-0.56 0.31 -0.31
135 AT3G07930 DNA glycosylase superfamily protein -0.55 0.33 -0.3
136 AT1G02950 glutathione S-transferase F4 glutathione S-transferase F4,
GLUTATHIONE S-TRANSFERASE 31,
glutathione S-transferase F4
-0.55 0.33 -0.35
137 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 -0.55 0.32 -0.31
138 AT3G42340 transposable element gene -0.55 0.31 -0.3
139 AT1G05740 Eukaryotic protein of unknown function (DUF842) -0.55 0.32 -0.33
140 AT1G30800 Fasciclin-like arabinogalactan family protein -0.55 0.3 -0.32
141 AT5G52140 RING/U-box superfamily protein -0.55 0.35 -0.32
142 AT5G25570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
-0.55 0.31 -0.31
143 AT2G17950 Homeodomain-like superfamily protein PGA6, WUSCHEL, WUSCHEL 1 -0.55 0.32 -0.32
144 AT1G03540 Pentatricopeptide repeat (PPR-like) superfamily protein -0.55 0.3 -0.32
145 AT3G24270 pumilio 25 pumilio 25, pumilio 25 -0.55 0.34 -0.31
146 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).
-0.55 0.32 -0.33
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
147 C0145 Maltotetraose - Maltotetraose starch degradation II 0.77 0.47 -0.44 C0145