AT5G59040 : copper transporter 3
Query Information
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AGICode AT5G59040
Description copper transporter 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G59040 copper transporter 3 copper transporter 3 1 0.31 -0.31
2 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 0.7 0.32 -0.33
3 AT3G04780 Protein of unknown function (DUF1000) -0.68 0.32 -0.32
4 AT5G64710 Putative endonuclease or glycosyl hydrolase -0.67 0.33 -0.3
5 AT2G26990 proteasome family protein ATCSN2, CONSTITUTIVE
PHOTOMORPHOGENIC 12, CSN2, FUSCA
12		 -0.67 0.3 -0.3
6 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.66 0.31 -0.33
7 AT1G36095 DNA binding 0.66 0.31 -0.29
8 AT4G37400 cytochrome P450, family 81, subfamily F, polypeptide 3 cytochrome P450, family 81,
subfamily F, polypeptide 3		 -0.66 0.33 -0.31
9 AT1G73340 Cytochrome P450 superfamily protein -0.65 0.31 -0.32
10 AT1G23910 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.65 0.32 -0.32
11 AT3G07330 Cellulose-synthase-like C6 ATCSLC06, Cellulose-synthase-like
C6, CELLULOSE-SYNTHASE LIKE C6,
Cellulose-synthase-like C6		 -0.65 0.34 -0.33
12 AT2G34020 Calcium-binding EF-hand family protein -0.65 0.32 -0.3
13 AT4G07790 transposable element gene -0.65 0.31 -0.32
14 AT3G53610 RAB GTPase homolog 8 RAB GTPase homolog 8, AtRab8B,
AtRABE1a, RAB GTPase homolog 8		 -0.64 0.31 -0.32
15 AT1G28560 snRNA activating complex family protein SHOOT REDIFFERENTIATION DEFECTIVE
2		 0.64 0.33 -0.32
16 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 -0.64 0.32 -0.3
17 AT5G58910 laccase 16 laccase 16 -0.64 0.3 -0.32
18 AT4G11610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.63 0.33 -0.31
19 AT1G72290 Kunitz family trypsin and protease inhibitor protein 0.63 0.34 -0.32
20 AT3G56110 prenylated RAB acceptor 1.B1 prenylated RAB acceptor 1.B1 -0.63 0.33 -0.32
21 AT3G27440 uridine kinase-like 5 uridine kinase-like 5 -0.63 0.31 -0.31
22 AT1G50840 polymerase gamma 2 polymerase gamma 2, polymerase I A 0.63 0.31 -0.32
23 AT2G40210 AGAMOUS-like 48 AGAMOUS-like 48 0.63 0.34 -0.31
24 AT5G65070 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 69, FCL4, MADS
AFFECTING FLOWERING 4		 -0.63 0.3 -0.31
25 AT2G10900 transposable element gene 0.63 0.32 -0.33
26 AT3G30845 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.31 -0.29
27 AT4G04150 transposable element gene 0.62 0.32 -0.33
28 AT2G11120 transposable element gene 0.62 0.33 -0.31
29 AT1G14080 fucosyltransferase 6 ATFUT6, fucosyltransferase 6 -0.61 0.32 -0.31
30 AT2G23310 Rer1 family protein ATRER1C1 -0.61 0.34 -0.33
31 AT3G19920 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits
to 217 proteins in 16 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.31
32 AT1G23610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23640.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.61 0.32 -0.3
33 AT3G44230 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G22160.1); Has 21 Blast hits
to 21 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.3 -0.31
34 AT5G28560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; Has 0 Blast hits to 0 proteins in 0 species
(source: NCBI BLink).		 -0.61 0.3 -0.36
35 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.61 0.33 -0.3
36 AT2G42560 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 0.61 0.32 -0.32
37 AT1G28270 ralf-like 4 ralf-like 4 0.61 0.32 -0.32
38 AT4G14530 BEST Arabidopsis thaliana protein match is: AGAMOUS-like 97
(TAIR:AT1G46408.1); Has 21 Blast hits to 21 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.32 -0.3
39 AT1G34530 transposable element gene 0.6 0.29 -0.32
40 AT4G08790 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 0.6 0.3 -0.35
41 AT3G63460 transducin family protein / WD-40 repeat family protein -0.6 0.33 -0.31
42 AT1G62920 CONTAINS InterPro DOMAIN/s: Proteasome maturation factor
UMP1 (InterPro:IPR008012); BEST Arabidopsis thaliana
protein match is: Proteasome maturation factor UMP1
(TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.3 -0.31
43 AT4G01510 Arv1-like protein ARV2 0.6 0.31 -0.31
44 AT4G11850 phospholipase D gamma 1 maternal effect embryo arrest 54,
phospholipase D gamma 1		 -0.6 0.3 -0.31
45 AT2G10020 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.31 -0.3
46 AT2G19250 pseudogene, similar to Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg- protoporphyrin IX chelatase)
(Mg-chelatase subunit D). (Common tobacco), similar to
SP|O24133 Magnesium-chelatase subunit chlD, chloroplast
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase
subunit D) {Nicotiana tabacum}; blastp match of 78%
identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC
Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D).
(Common tobacco) {Nicotiana tabacum}		 0.6 0.33 -0.32
47 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.59 0.32 -0.31
48 AT4G30900 DNAse I-like superfamily protein 0.59 0.29 -0.33
49 AT2G19550 alpha/beta-Hydrolases superfamily protein 0.59 0.31 -0.32
50 ATMG00840 hypothetical protein ORF121B -0.59 0.3 -0.33
51 AT1G41900 transposable element gene 0.59 0.32 -0.33
52 AT2G38480 Uncharacterised protein family (UPF0497) -0.59 0.33 -0.35
53 AT5G44710 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33,
mitochondrial (InterPro:IPR013219); Has 101 Blast hits to
101 proteins in 55 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 -0.59 0.31 -0.33
54 AT2G04670 transposable element gene 0.59 0.32 -0.32
55 AT1G27520 Glycosyl hydrolase family 47 protein 0.59 0.32 -0.32
56 AT3G27310 plant UBX domain-containing protein 1 plant UBX domain-containing
protein 1		 -0.58 0.32 -0.31
57 AT5G13990 exocyst subunit exo70 family protein C2 exocyst subunit exo70 family
protein C2, exocyst subunit exo70
family protein C2		 -0.58 0.3 -0.33
58 AT5G17150 Cystatin/monellin superfamily protein 0.58 0.29 -0.31
59 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein 0.58 0.33 -0.3
60 AT3G46750 unknown protein; Has 2631 Blast hits to 1984 proteins in
271 species: Archae - 6; Bacteria - 163; Metazoa - 1232;
Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes -
828 (source: NCBI BLink).		 -0.58 0.31 -0.33
61 AT3G42260 transposable element gene 0.58 0.32 -0.3
62 AT3G14780 CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant
(InterPro:IPR004252); BEST Arabidopsis thaliana protein
match is: glucan synthase-like 4 (TAIR:AT3G14570.2); Has
315 Blast hits to 313 proteins in 50 species: Archae - 2;
Bacteria - 16; Metazoa - 11; Fungi - 7; Plants - 181;
Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).		 -0.58 0.3 -0.33
63 AT1G11990 O-fucosyltransferase family protein 0.57 0.31 -0.32
64 AT4G00460 RHO guanyl-nucleotide exchange factor 3 ATROPGEF3, RHO guanyl-nucleotide
exchange factor 3		 -0.57 0.32 -0.3
65 AT1G22860 Vacuolar sorting protein 39 0.57 0.31 -0.3
66 AT4G33905 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.57 0.31 -0.32
67 AT5G24880 BEST Arabidopsis thaliana protein match is:
calmodulin-binding protein-related (TAIR:AT5G10660.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.57 0.32 -0.3
68 AT2G17330 putative obtusifoliol 14-alpha demethylase. Expressed
pseudogene.		 CYTOCHROME P450 51A1, CYTOCHROME
P450 51G2		 -0.57 0.33 -0.31
69 AT1G23720 Proline-rich extensin-like family protein -0.57 0.33 -0.3
70 AT4G04080 ISCU-like 3 ISCU-LIKE 3, ISCU-like 3 0.57 0.32 -0.33
71 AT5G27510 Protein kinase superfamily protein -0.57 0.32 -0.29
72 AT5G21110 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.29 -0.31
73 AT1G70460 root hair specific 10 proline-rich extensin-like
receptor kinase 13, proline-rich
extensin-like receptor kinase 13,
root hair specific 10		 -0.57 0.31 -0.32
74 AT1G02580 SET domain-containing protein EMBRYO DEFECTIVE 173,
FERTILIZATION INDEPENDENT SEED 1,
MEDEA, SET DOMAIN-CONTAINING
PROTEIN 5		 0.57 0.33 -0.34
75 AT1G07680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23903.1); Has 7 Blast
hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.31 -0.3
76 AT4G14815 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.57 0.33 -0.31
77 AT2G20210 RNI-like superfamily protein -0.56 0.32 -0.32
78 AT5G55900 Sucrase/ferredoxin-like family protein 0.56 0.33 -0.3
79 AT3G27270 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 0.56 0.33 -0.32
80 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 0.56 0.32 -0.32
81 AT2G23230 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.56 0.31 -0.34
82 AT5G28240 transposable element gene -0.56 0.32 -0.29
83 AT3G56550 Pentatricopeptide repeat (PPR) superfamily protein 0.56 0.3 -0.31
84 AT5G20650 copper transporter 5 copper transporter 5 -0.56 0.32 -0.32
85 AT1G18970 germin-like protein 4 germin-like protein 4 -0.56 0.33 -0.34
86 AT2G13335 transposable element gene -0.56 0.33 -0.3
87 AT4G13800 Protein of unknown function (DUF803) -0.55 0.28 -0.29
88 AT4G30570 Glucose-1-phosphate adenylyltransferase family protein 0.55 0.32 -0.3
89 AT4G10670 GTC2 GTC2 -0.55 0.34 -0.32
90 AT1G74055 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 6 growth stages; Has 24 Blast hits to 24 proteins
in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.55 0.31 -0.31
91 AT3G20990 transposable element gene -0.55 0.33 -0.33
92 AT5G24710 Transducin/WD40 repeat-like superfamily protein -0.55 0.31 -0.32
93 AT2G42370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits
to 191 proteins in 60 species: Archae - 3; Bacteria - 23;
Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other
Eukaryotes - 64 (source: NCBI BLink).		 0.55 0.3 -0.32
94 AT1G73690 cyclin-dependent kinase D1;1 CYCLIN-DEPENDENT KINASE D1,
CAK3AT, cyclin-dependent kinase
D1;1		 -0.55 0.35 -0.32
95 AT5G05150 autophagy-related gene 18E ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18E,
autophagy-related gene 18E,
autophagy-related gene 18E		 -0.55 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
96 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		0.69 0.47 -0.45 C0009
97 C0184 MST_3110.4 - - - 0.66 0.44 -0.46