AT5G58760 : damaged DNA binding 2
Query Information
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AGICode AT5G58760
Description damaged DNA binding 2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 1 0.32 -0.3
2 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.77 0.32 -0.31
3 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.76 0.3 -0.31
4 AT3G53990 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.76 0.32 -0.31
5 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.75 0.3 -0.31
6 AT1G22540 Major facilitator superfamily protein -0.75 0.32 -0.32
7 AT3G04820 Pseudouridine synthase family protein 0.75 0.31 -0.33
8 AT4G14900 FRIGIDA-like protein 0.74 0.3 -0.32
9 AT2G31190 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 2, weak auxin
response1		 -0.74 0.32 -0.33
10 AT4G14690 Chlorophyll A-B binding family protein EARLY LIGHT-INDUCIBLE PROTEIN 2 0.74 0.3 -0.32
11 AT1G32860 Glycosyl hydrolase superfamily protein 0.74 0.31 -0.3
12 AT1G37130 nitrate reductase 2 ARABIDOPSIS NITRATE REDUCTASE 2,
B29, CHLORATE RESISTANT 3, nitrate
reductase 2, NIA2-1, NITRATE
REDUCTASE, NITRATE REDUCTASE 2		 -0.73 0.31 -0.3
13 AT5G14570 high affinity nitrate transporter 2.7 high affinity nitrate transporter
2.7, high affinity nitrate
transporter 2.7		 0.73 0.3 -0.31
14 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.73 0.32 -0.33
15 AT5G67150 HXXXD-type acyl-transferase family protein -0.73 0.32 -0.32
16 AT4G10060 Beta-glucosidase, GBA2 type family protein -0.73 0.31 -0.3
17 AT4G38130 histone deacetylase 1 ARABIDOPSIS HISTONE DEACETYLASE 1,
ARABIDOPSIS HISTONE DEACETYLASE
19, histone deacetylase 1, HDA1,
HISTONE DEACETYLASE 19, RPD3A		 0.72 0.34 -0.31
18 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.72 0.29 -0.3
19 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.72 0.31 -0.3
20 AT3G47560 alpha/beta-Hydrolases superfamily protein -0.72 0.32 -0.29
21 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.72 0.32 -0.31
22 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.72 0.3 -0.32
23 AT4G12640 RNA recognition motif (RRM)-containing protein 0.71 0.31 -0.33
24 AT1G35470 SPla/RYanodine receptor (SPRY) domain-containing protein -0.7 0.34 -0.34
25 AT2G44210 Protein of Unknown Function (DUF239) -0.7 0.34 -0.31
26 AT3G22840 Chlorophyll A-B binding family protein ELIP, EARLY LIGHT-INDUCABLE
PROTEIN		 0.7 0.3 -0.31
27 AT1G01510 NAD(P)-binding Rossmann-fold superfamily protein ANGUSTIFOLIA 0.69 0.31 -0.32
28 AT1G29260 peroxin 7 ARABIDOPSIS PEROXIN 7, peroxin 7 -0.69 0.29 -0.31
29 AT4G25500 arginine/serine-rich splicing factor 35 arginine/serine-rich splicing
factor 40, AT-SRP40, ARABIDOPSIS
THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35, ATRSP40,
arginine/serine-rich splicing
factor 40, arginine/serine-rich
splicing factor 35		 0.69 0.33 -0.3
30 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.69 0.32 -0.3
31 AT4G10890 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2439 (InterPro:IPR018838); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.69 0.32 -0.32
32 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.3 -0.31
33 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.31 -0.32
34 AT5G08560 transducin family protein / WD-40 repeat family protein 0.69 0.33 -0.35
35 AT5G40470 RNI-like superfamily protein -0.68 0.33 -0.32
36 AT1G07420 sterol 4-alpha-methyl-oxidase 2-1 Arabidopsis thaliana sterol
4-alpha-methyl oxidase 1, sterol
4-alpha-methyl-oxidase 2-1		 0.68 0.3 -0.3
37 AT5G40610 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 -0.68 0.34 -0.31
38 AT5G54660 HSP20-like chaperones superfamily protein -0.68 0.3 -0.3
39 AT4G03430 pre-mRNA splicing factor-related EMBRYO DEFECTIVE 2770, STABILIZED
1		 0.68 0.32 -0.31
40 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.67 0.33 -0.33
41 AT2G46220 Uncharacterized conserved protein (DUF2358) -0.67 0.31 -0.34
42 AT2G01080 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.67 0.29 -0.32
43 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.67 0.31 -0.31
44 AT1G11390 Protein kinase superfamily protein 0.67 0.3 -0.32
45 AT2G26520 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits
to 51 proteins in 11 species: Archae - 0; Bacteria - 1;
Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.32 -0.32
46 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.67 0.31 -0.32
47 AT5G14220 Flavin containing amine oxidoreductase family HEMG2, MATERNAL EFFECT EMBRYO
ARREST 61, PPO2		 -0.67 0.31 -0.31
48 AT1G33780 Protein of unknown function (DUF179) -0.67 0.31 -0.29
49 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.66 0.32 -0.31
50 AT3G19800 Protein of unknown function (DUF177) -0.66 0.32 -0.31
51 AT5G54250 cyclic nucleotide-gated cation channel 4 cyclic nucleotide-gated cation
channel 4, cyclic nucleotide-gated
cation channel 4, DEFENSE, NO
DEATH 2, HLM1		 -0.66 0.32 -0.33
52 AT4G30150 CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA
processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast
hits to 49 proteins in 21 species: Archae - 0; Bacteria -
2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other
Eukaryotes - 7 (source: NCBI BLink).		 0.66 0.32 -0.3
53 AT2G36930 zinc finger (C2H2 type) family protein 0.66 0.34 -0.31
54 AT4G25940 ENTH/ANTH/VHS superfamily protein -0.66 0.32 -0.29
55 AT4G27940 manganese tracking factor for mitochondrial SOD2 ARABIDOPSIS MANGANESE TRACKING
FACTOR FOR MITOCHONDRIAL SOD2,
manganese tracking factor for
mitochondrial SOD2		 0.66 0.32 -0.33
56 AT2G35020 N-acetylglucosamine-1-phosphate uridylyltransferase 2 N-acetylglucosamine-1-phosphate
uridylyltransferase 2		 -0.65 0.31 -0.31
57 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.34 -0.32
58 AT4G28020 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0066
(InterPro:IPR001378); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.32 -0.33
59 AT4G39780 Integrase-type DNA-binding superfamily protein -0.65 0.31 -0.31
60 AT1G78020 Protein of unknown function (DUF581) -0.65 0.31 -0.32
61 AT3G04890 Uncharacterized conserved protein (DUF2358) -0.65 0.3 -0.32
62 AT1G09770 cell division cycle 5 ARABIDOPSIS THALIANA CELL DIVISION
CYCLE 5, ARABIDOPSIS THALIANA MYB
DOMAIN CELL DIVISION CYCLE 5, cell
division cycle 5		 0.65 0.32 -0.3
63 AT1G19000 Homeodomain-like superfamily protein -0.64 0.31 -0.3
64 AT2G01680 Ankyrin repeat family protein -0.64 0.3 -0.32
65 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.64 0.3 -0.32
66 AT5G58600 Plant protein of unknown function (DUF828) POWDERY MILDEW RESISTANT 5,
TRICHOME BIREFRINGENCE-LIKE 44		 0.64 0.31 -0.33
67 AT1G54390 PHD finger protein-related INHIBITOR OF GROWTH 2 -0.64 0.34 -0.29
68 AT1G16780 Inorganic H pyrophosphatase family protein AtVHP2;2, VHP2;2 -0.64 0.31 -0.32
69 AT5G42950 GYF domain-containing protein 0.63 0.31 -0.3
70 AT5G24270 Calcium-binding EF-hand family protein SALT OVERLY SENSITIVE 3,
CALCINEURIN B-LIKE PROTEIN 4, SALT
OVERLY SENSITIVE 3		 0.63 0.32 -0.31
71 AT5G20700 Protein of unknown function (DUF581) -0.63 0.31 -0.34
72 AT5G11390 WPP domain-interacting protein 1 WPP domain-interacting protein 1 0.63 0.32 -0.32
73 AT5G20830 sucrose synthase 1 ASUS1, atsus1, sucrose synthase 1 0.63 0.31 -0.34
74 AT2G46920 Protein phosphatase 2C family protein poltergeist 0.63 0.32 -0.32
75 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.63 0.31 -0.31
76 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 0.63 0.32 -0.31
77 AT1G57600 MBOAT (membrane bound O-acyl transferase) family protein -0.63 0.33 -0.31
78 AT1G12650 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF947 (InterPro:IPR009292); Has 700 Blast
hits to 631 proteins in 192 species: Archae - 0; Bacteria -
32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0;
Other Eukaryotes - 302 (source: NCBI BLink).		 0.63 0.33 -0.34
79 AT2G34490 cytochrome P450, family 710, subfamily A, polypeptide 2 cytochrome P450, family 710,
subfamily A, polypeptide 2		 -0.63 0.32 -0.31
80 AT3G11280 Duplicated homeodomain-like superfamily protein -0.63 0.32 -0.32
81 AT2G19580 tetraspanin2 tetraspanin2 0.62 0.3 -0.3
82 AT4G23730 Galactose mutarotase-like superfamily protein -0.62 0.3 -0.32
83 AT3G24660 transmembrane kinase-like 1 transmembrane kinase-like 1 0.62 0.33 -0.31
84 AT3G50270 HXXXD-type acyl-transferase family protein -0.62 0.32 -0.3
85 AT1G77180 chromatin protein family SKIP 0.62 0.32 -0.31
86 AT4G31270 sequence-specific DNA binding transcription factors -0.62 0.31 -0.31
87 AT5G40850 urophorphyrin methylase 1 urophorphyrin methylase 1 -0.62 0.33 -0.28
88 AT1G65220 ARM repeat superfamily protein 0.62 0.31 -0.32
89 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.62 0.29 -0.31
90 AT3G55120 Chalcone-flavanone isomerase family protein A11, CHALCONE FLAVANONE ISOMERASE,
TRANSPARENT TESTA 5		 0.62 0.32 -0.32
91 AT1G75130 cytochrome P450, family 721, subfamily A, polypeptide 1 cytochrome P450, family 721,
subfamily A, polypeptide 1		 -0.62 0.31 -0.31
92 AT5G56240 BEST Arabidopsis thaliana protein match is: hapless 8
(TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.61 0.33 -0.34
93 AT3G18270 cytochrome P450, family 77, subfamily A, polypeptide 5
pseudogene		 cytochrome P450, family 77,
subfamily A, polypeptide 5
pseudogene		 -0.61 0.34 -0.33
94 AT2G28360 SIT4 phosphatase-associated family protein 0.61 0.33 -0.29
95 AT2G45740 peroxin 11D peroxin 11D -0.61 0.32 -0.28
96 AT5G03000 Galactose oxidase/kelch repeat superfamily protein -0.61 0.31 -0.31
97 AT3G61430 plasma membrane intrinsic protein 1A ARABIDOPSIS THALIANA PLASMA
MEMBRANE INTRINSIC PROTEIN 1,
PLASMA MEMBRANE INTRINSIC PROTEIN
1, PLASMA MEMBRANE INTRINSIC
PROTEIN 1;1, plasma membrane
intrinsic protein 1A		 -0.6 0.32 -0.31
98 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.6 0.32 -0.31
99 AT3G47000 Glycosyl hydrolase family protein -0.6 0.33 -0.3
100 AT3G30710 transposable element gene -0.6 0.32 -0.31
101 AT5G40890 chloride channel A chloride channel A, ATCLCA,
chloride channel A, CHLORIDE
CHANNEL-A, CHLORIDE CHANNEL A		 -0.6 0.32 -0.32
102 AT3G19030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pyridoxine biosynthetic process, homoserine
biosynthetic process; LOCATED IN: endomembrane system;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits to 22
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.31 -0.3
103 AT5G52540 Protein of unknown function (DUF819) -0.59 0.33 -0.31
104 AT1G49480 related to vernalization1 1 related to vernalization1 1 -0.59 0.33 -0.35
105 AT1G19170 Pectin lyase-like superfamily protein -0.58 0.3 -0.32
106 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.32 -0.33
107 AT4G10800 BEST Arabidopsis thaliana protein match is: BTB/POZ
domain-containing protein (TAIR:AT3G05675.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.29 -0.31
108 AT3G18295 Protein of unknown function (DUF1639) -0.58 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0173 MST_2301.7 - - - 0.8 0.44 -0.43
110 C0215 PR_MST_2527.1 - - - 0.72 0.44 -0.45
111 C0103 Glutaric acid - - - 0.67 0.48 -0.44
112 C0213 PR_MST_2410.2 - - - 0.62 0.46 -0.45