AT5G57990 : ubiquitin-specific protease 23
Query Information
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AGICode AT5G57990
Description ubiquitin-specific protease 23
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 1 0.3 -0.3
2 AT4G05410 Transducin/WD40 repeat-like superfamily protein YAOZHE 0.88 0.31 -0.32
3 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.87 0.34 -0.32
4 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.35 -0.3
5 AT1G72440 CCAAT-binding factor embryo sac development arrest 25,
SLOW WALKER2		 0.87 0.3 -0.31
6 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.86 0.29 -0.29
7 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.86 0.31 -0.31
8 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.86 0.33 -0.32
9 AT1G42440 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop
containing nucleoside triphosphate hydrolases superfamily
protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088
proteins in 291 species: Archae - 2; Bacteria - 131;
Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49;
Other Eukaryotes - 905 (source: NCBI BLink).		 0.86 0.33 -0.33
10 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.86 0.33 -0.3
11 AT1G48920 nucleolin like 1 nucleolin like 1, nucleolin like
1, PARALLEL 1		 0.85 0.32 -0.31
12 AT2G18900 Transducin/WD40 repeat-like superfamily protein 0.85 0.3 -0.31
13 AT5G59980 Polymerase/histidinol phosphatase-like 0.85 0.32 -0.31
14 AT4G02400 U3 ribonucleoprotein (Utp) family protein 0.85 0.3 -0.29
15 AT5G55920 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 OLIGOCELLULA 2 0.85 0.31 -0.32
16 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.84 0.33 -0.33
17 AT1G80750 Ribosomal protein L30/L7 family protein 0.84 0.31 -0.3
18 AT4G38710 glycine-rich protein 0.84 0.32 -0.32
19 AT4G28450 nucleotide binding;protein binding 0.84 0.31 -0.32
20 AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein -0.84 0.32 -0.31
21 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.83 0.3 -0.3
22 AT4G15770 RNA binding 0.83 0.29 -0.34
23 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.83 0.33 -0.31
24 AT2G34970 Trimeric LpxA-like enzyme 0.83 0.3 -0.31
25 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.83 0.31 -0.3
26 AT3G13230 RNA-binding KH domain-containing protein 0.83 0.29 -0.3
27 AT3G25940 TFIIB zinc-binding protein 0.82 0.31 -0.29
28 AT1G10270 glutamine-rich protein 23 glutamine-rich protein 23 0.82 0.31 -0.32
29 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.82 0.3 -0.3
30 AT1G13160 ARM repeat superfamily protein 0.82 0.31 -0.32
31 AT4G26600 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.82 0.33 -0.32
32 AT5G11240 transducin family protein / WD-40 repeat family protein 0.82 0.32 -0.32
33 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.82 0.33 -0.35
34 AT1G69250 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.82 0.3 -0.35
35 AT5G06110 DnaJ domain ;Myb-like DNA-binding domain 0.82 0.3 -0.32
36 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.81 0.32 -0.33
37 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.81 0.32 -0.29
38 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.81 0.33 -0.31
39 AT1G29900 carbamoyl phosphate synthetase B carbamoyl phosphate synthetase B,
VENOSA 3		 0.81 0.31 -0.32
40 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.32 -0.31
41 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 0.81 0.32 -0.31
42 AT5G54910 DEA(D/H)-box RNA helicase family protein 0.81 0.31 -0.33
43 AT3G10530 Transducin/WD40 repeat-like superfamily protein 0.81 0.31 -0.31
44 AT4G25730 FtsJ-like methyltransferase family protein 0.81 0.3 -0.33
45 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 0.81 0.34 -0.29
46 AT5G14050 Transducin/WD40 repeat-like superfamily protein 0.81 0.3 -0.31
47 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.81 0.32 -0.33
48 AT1G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 40 Blast hits to 40 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.81 0.32 -0.32
49 AT1G16280 RNA helicase 36 Arabidopsis thaliana RNA helicase
36, RNA helicase 36, SLOW WALKER 3		 0.81 0.31 -0.31
50 AT1G75670 DNA-directed RNA polymerases 0.8 0.3 -0.34
51 AT2G40430 CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687),
Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has
709 Blast hits to 643 proteins in 201 species: Archae - 0;
Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45;
Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).		 0.8 0.32 -0.31
52 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.8 0.32 -0.33
53 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.8 0.31 -0.32
54 AT2G32220 Ribosomal L27e protein family 0.8 0.29 -0.32
55 AT5G61020 evolutionarily conserved C-terminal region 3 evolutionarily conserved
C-terminal region 3		 0.8 0.29 -0.31
56 AT1G79150 binding 0.8 0.28 -0.32
57 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 0.8 0.32 -0.33
58 AT1G06380 Ribosomal protein L1p/L10e family 0.8 0.32 -0.34
59 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 0.8 0.3 -0.33
60 AT3G22660 rRNA processing protein-related 0.8 0.32 -0.32
61 AT3G55510 Noc2p family REBELOTE 0.8 0.32 -0.29
62 AT4G23540 ARM repeat superfamily protein 0.8 0.31 -0.34
63 AT2G25970 KH domain-containing protein 0.79 0.31 -0.32
64 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.79 0.34 -0.3
65 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.79 0.33 -0.31
66 AT5G22320 Leucine-rich repeat (LRR) family protein 0.79 0.31 -0.33
67 AT4G04940 transducin family protein / WD-40 repeat family protein 0.79 0.3 -0.33
68 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.79 0.31 -0.33
69 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.34 -0.33
70 AT1G54380 spliceosome protein-related 0.79 0.33 -0.32
71 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 0.79 0.32 -0.31
72 AT5G20600 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA
processing; LOCATED IN: preribosome, small subunit
precursor; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits
to 530 proteins in 201 species: Archae - 0; Bacteria - 10;
Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other
Eukaryotes - 112 (source: NCBI BLink).		 0.79 0.33 -0.29
73 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.78 0.31 -0.31
74 AT1G22730 MA3 domain-containing protein 0.78 0.33 -0.34
75 AT1G15740 Leucine-rich repeat family protein -0.78 0.29 -0.31
76 AT2G34357 ARM repeat superfamily protein 0.78 0.33 -0.32
77 AT4G00090 Transducin/WD40 repeat-like superfamily protein 0.78 0.33 -0.32
78 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.78 0.31 -0.29
79 AT5G02500 heat shock cognate protein 70-1 ARABIDOPSIS THALIANA HEAT SHOCK
COGNATE PROTEIN 70-1, AtHsp70-1,
HEAT SHOCK COGNATE PROTEIN 70,
heat shock cognate protein 70-1,
HEAT SHOCK PROTEIN 70-1		 0.77 0.3 -0.32
80 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.77 0.31 -0.31
81 AT1G79490 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 2217 0.77 0.31 -0.32
82 AT1G04945 HIT-type Zinc finger family protein 0.77 0.32 -0.31
83 AT3G07050 GTP-binding family protein nucleostemin-like 1 0.77 0.31 -0.31
84 AT1G06670 nuclear DEIH-boxhelicase nuclear DEIH-boxhelicase 0.77 0.32 -0.31
85 AT2G31240 Tetratricopeptide repeat (TPR)-like superfamily protein 0.77 0.31 -0.31
86 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.77 0.32 -0.31
87 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.76 0.31 -0.33
88 AT1G66070 Translation initiation factor eIF3 subunit 0.76 0.31 -0.31
89 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.76 0.3 -0.35
90 AT5G49530 SIN-like family protein 0.76 0.33 -0.32
91 AT2G16430 purple acid phosphatase 10 ATPAP10, purple acid phosphatase
10		 0.76 0.34 -0.31
92 AT1G71850 Ubiquitin carboxyl-terminal hydrolase family protein 0.76 0.33 -0.3
93 AT1G31970 DEA(D/H)-box RNA helicase family protein STRESS RESPONSE SUPPRESSOR 1 0.76 0.32 -0.32
94 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.76 0.33 -0.3
95 AT1G72320 pumilio 23 pumilio 23, pumilio 23 0.76 0.33 -0.33
96 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 0.76 0.31 -0.31
97 AT3G04580 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 ETHYLENE INSENSITIVE 4 0.76 0.31 -0.33
98 AT3G49240 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1796 0.76 0.32 -0.3
99 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.75 0.31 -0.3
100 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.75 0.32 -0.33
101 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.72 0.31 -0.34
102 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12		 -0.72 0.33 -0.32
103 AT3G53950 glyoxal oxidase-related protein -0.72 0.33 -0.32
104 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.72 0.33 -0.33
105 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.71 0.32 -0.28
106 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.71 0.33 -0.3
107 AT3G02340 RING/U-box superfamily protein -0.69 0.31 -0.32
108 AT3G26510 Octicosapeptide/Phox/Bem1p family protein -0.69 0.31 -0.33
109 AT5G66880 sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 SUCROSE NONFERMENTING 1
(SNF1)-RELATED PROTEIN KINASE 2-3,
sucrose nonfermenting
1(SNF1)-related protein kinase
2.3, SRK2I		 -0.68 0.32 -0.32
110 AT3G23080 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.68 0.3 -0.3
111 AT5G02020 Encodes a protein involved in salt tolerance, names SIS
(Salt Induced Serine rich).		 Salt Induced Serine rich -0.67 0.29 -0.31
112 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.66 0.31 -0.34
113 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.31 -0.32
114 AT1G79420 Protein of unknown function (DUF620) -0.64 0.28 -0.33
115 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.64 0.31 -0.31
116 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 -0.62 0.31 -0.29
117 AT5G49500 Signal recognition particle, SRP54 subunit protein -0.62 0.32 -0.31
118 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.62 0.33 -0.33
119 AT1G56280 drought-induced 19 drought-induced 19,
drought-induced 19		 -0.62 0.32 -0.31
120 AT1G43580 Sphingomyelin synthetase family protein -0.62 0.31 -0.32
121 AT1G67870 glycine-rich protein -0.61 0.31 -0.31
122 AT3G59530 Calcium-dependent phosphotriesterase superfamily protein LESS ADHERENT POLLEN 3 -0.61 0.32 -0.32
123 AT1G54680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in
57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi -
0; Plants - 127; Viruses - 0; Other Eukaryotes - 14
(source: NCBI BLink).		 -0.61 0.33 -0.31
124 AT5G63190 MA3 domain-containing protein -0.61 0.34 -0.32
125 AT4G31270 sequence-specific DNA binding transcription factors -0.6 0.3 -0.33
126 AT3G17770 Dihydroxyacetone kinase -0.6 0.31 -0.3
127 AT2G46760 D-arabinono-1,4-lactone oxidase family protein -0.6 0.29 -0.34
128 AT1G53060 Legume lectin family protein -0.6 0.31 -0.31
129 AT5G12310 RING/U-box superfamily protein -0.6 0.34 -0.3
130 AT5G24750 UDP-Glycosyltransferase superfamily protein -0.6 0.3 -0.31
131 AT1G17790 DNA-binding bromodomain-containing protein -0.6 0.3 -0.31