AT5G58130 : REPRESSOR OF SILENCING 3
Query Information
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AGICode AT5G58130
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 1 0.3 -0.33
2 AT5G22840 Protein kinase superfamily protein 0.8 0.32 -0.32
3 AT4G10060 Beta-glucosidase, GBA2 type family protein -0.79 0.31 -0.33
4 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.78 0.33 -0.32
5 AT1G61640 Protein kinase superfamily protein 0.77 0.3 -0.3
6 AT3G19800 Protein of unknown function (DUF177) -0.76 0.3 -0.32
7 AT1G04810 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 0.75 0.32 -0.3
8 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 0.75 0.31 -0.32
9 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.75 0.34 -0.29
10 AT5G12220 las1-like family protein 0.74 0.29 -0.33
11 AT5G10630 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.74 0.31 -0.33
12 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.74 0.3 -0.31
13 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.74 0.31 -0.3
14 AT1G02460 Pectin lyase-like superfamily protein 0.73 0.33 -0.3
15 AT3G26782 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.32 -0.31
16 AT1G28060 Pre-mRNA-splicing factor 3 0.73 0.29 -0.31
17 AT2G18740 Small nuclear ribonucleoprotein family protein 0.73 0.32 -0.3
18 AT3G19630 Radical SAM superfamily protein 0.72 0.29 -0.3
19 AT5G14450 GDSL-like Lipase/Acylhydrolase superfamily protein -0.72 0.33 -0.31
20 AT3G48250 Pentatricopeptide repeat (PPR) superfamily protein Buthionine sulfoximine-insensitive
roots 6		 0.72 0.31 -0.32
21 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 0.72 0.3 -0.33
22 AT1G33230 TMPIT-like protein 0.72 0.31 -0.32
23 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.72 0.31 -0.32
24 AT5G09420 translocon at the outer membrane of chloroplasts 64-V AtmtOM64, translocon at the outer
membrane of chloroplasts 64-V,
ARABIDOPSIS THALIANA TRANSLOCON AT
THE OUTER MEMBRANE OF CHLOROPLASTS
64-V, outer membrane 64,
translocon at the outer membrane
of chloroplasts 64-V		 0.72 0.29 -0.3
25 AT5G47720 Thiolase family protein -0.72 0.32 -0.33
26 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.72 0.34 -0.32
27 AT3G23080 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.72 0.34 -0.34
28 AT2G20370 Exostosin family protein AtMUR3, KATAMARI 1, MURUS 3 0.72 0.3 -0.34
29 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12		 -0.71 0.33 -0.32
30 AT3G16230 Predicted eukaryotic LigT -0.71 0.31 -0.3
31 AT2G46220 Uncharacterized conserved protein (DUF2358) -0.71 0.34 -0.3
32 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.71 0.32 -0.31
33 AT1G62730 Terpenoid synthases superfamily protein 0.71 0.32 -0.31
34 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.32 -0.33
35 AT4G09570 calcium-dependent protein kinase 4 ATCPK4, calcium-dependent protein
kinase 4		 0.71 0.32 -0.3
36 AT2G24280 alpha/beta-Hydrolases superfamily protein -0.71 0.31 -0.3
37 AT1G06780 galacturonosyltransferase 6 galacturonosyltransferase 6 0.7 0.31 -0.34
38 AT4G28480 DNAJ heat shock family protein 0.7 0.31 -0.33
39 AT5G05820 Nucleotide-sugar transporter family protein 0.7 0.33 -0.3
40 AT2G03310 unknown protein; Has 17 Blast hits to 17 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.34
41 AT3G18640 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.7 0.3 -0.33
42 AT3G09350 Fes1A Fes1A 0.7 0.31 -0.34
43 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.7 0.32 -0.29
44 AT2G24762 glutamine dumper 4 glutamine dumper 4, glutamine
dumper 4		 -0.7 0.29 -0.31
45 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.69 0.33 -0.32
46 AT3G01150 polypyrimidine tract-binding protein 1 POLYPYRIMIDINE TRACT-BINDING
PROTEIN 1, polypyrimidine
tract-binding protein 1		 0.69 0.31 -0.3
47 AT3G15940 UDP-Glycosyltransferase superfamily protein -0.69 0.31 -0.33
48 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.69 0.33 -0.34
49 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.69 0.31 -0.3
50 AT3G44110 DNAJ homologue 3 ATJ, DNAJ homologue 3, J3 0.69 0.3 -0.31
51 AT4G04180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.32 -0.31
52 AT2G21520 Sec14p-like phosphatidylinositol transfer family protein 0.69 0.32 -0.31
53 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.69 0.32 -0.31
54 AT2G16920 ubiquitin-conjugating enzyme 23 PHO2 FAMILY UBIQUITIN CONJUGATION
ENZYME 2, ubiquitin-conjugating
enzyme 23		 0.69 0.28 -0.32
55 AT4G22330 Alkaline phytoceramidase (aPHC) ATCES1 0.69 0.35 -0.32
56 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.68 0.31 -0.32
57 AT3G43510 transposable element gene 0.68 0.32 -0.31
58 AT5G54660 HSP20-like chaperones superfamily protein -0.68 0.29 -0.33
59 AT4G33660 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.33 -0.3
60 AT3G55580 Regulator of chromosome condensation (RCC1) family protein 0.68 0.31 -0.33
61 AT1G08570 atypical CYS HIS rich thioredoxin 4 atypical CYS HIS rich thioredoxin
4		 -0.67 0.31 -0.32
62 AT5G14570 high affinity nitrate transporter 2.7 high affinity nitrate transporter
2.7, high affinity nitrate
transporter 2.7		 0.67 0.31 -0.31
63 AT1G07970 CONTAINS InterPro DOMAIN/s: Cytochrome B561-related,
N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213
proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa -
131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes
- 14 (source: NCBI BLink).		 0.67 0.3 -0.3
64 AT4G12240 zinc finger (C2H2 type) family protein 0.67 0.3 -0.28
65 AT1G70630 Nucleotide-diphospho-sugar transferase family protein 0.67 0.32 -0.31
66 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.67 0.3 -0.32
67 AT3G24040 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.67 0.31 -0.31
68 AT4G23040 Ubiquitin-like superfamily protein 0.67 0.31 -0.31
69 AT5G20180 Ribosomal protein L36 0.67 0.32 -0.3
70 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.67 0.33 -0.32
71 AT1G49180 protein kinase family protein -0.67 0.32 -0.32
72 AT5G18400 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S
biogenesis		 0.67 0.3 -0.32
73 AT1G64720 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 CP5 -0.67 0.3 -0.32
74 AT5G62350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.66 0.33 -0.33
75 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.66 0.32 -0.31
76 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.66 0.3 -0.31
77 AT5G11350 DNAse I-like superfamily protein -0.66 0.33 -0.32
78 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.66 0.31 -0.3
79 AT3G11620 alpha/beta-Hydrolases superfamily protein -0.66 0.3 -0.32
80 AT1G11390 Protein kinase superfamily protein 0.66 0.33 -0.31
81 AT1G62740 stress-inducible protein, putative Hop2 0.66 0.29 -0.34
82 AT5G28150 Plant protein of unknown function (DUF868) 0.66 0.33 -0.31
83 AT3G13672 TRAF-like superfamily protein -0.66 0.3 -0.3
84 AT5G14310 carboxyesterase 16 carboxyesterase 16,
carboxyesterase 16		 0.66 0.32 -0.32
85 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 0.66 0.3 -0.31
86 AT1G67080 abscisic acid (aba)-deficient 4 abscisic acid (ABA)-deficient 4 -0.65 0.35 -0.3
87 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.65 0.32 -0.31
88 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.65 0.32 -0.31
89 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.65 0.32 -0.3
90 AT2G41630 transcription factor IIB transcription factor IIB 0.65 0.32 -0.3
91 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.31 -0.31
92 AT4G03430 pre-mRNA splicing factor-related EMBRYO DEFECTIVE 2770, STABILIZED
1		 0.65 0.31 -0.31
93 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.32 -0.31
94 AT1G54390 PHD finger protein-related INHIBITOR OF GROWTH 2 -0.65 0.31 -0.32
95 AT1G34640 peptidases -0.65 0.31 -0.32
96 AT1G78570 rhamnose biosynthesis 1 ARABIDOPSIS THALIANA RHAMNOSE
BIOSYNTHESIS 1, rhamnose
biosynthesis 1, REPRESSOR OF LRX1
1		 0.65 0.31 -0.3
97 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.64 0.28 -0.32
98 AT2G20670 Protein of unknown function (DUF506) -0.64 0.3 -0.33
99 AT4G16480 inositol transporter 4 ATINT4, inositol transporter 4 -0.64 0.33 -0.32
100 AT5G54520 Transducin/WD40 repeat-like superfamily protein -0.64 0.29 -0.32
101 AT2G07110 BEST Arabidopsis thaliana protein match is: Ribosomal
protein S5 domain 2-like superfamily protein
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.64 0.33 -0.33
102 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.64 0.35 -0.32
103 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.63 0.31 -0.31
104 AT1G74300 alpha/beta-Hydrolases superfamily protein -0.63 0.29 -0.33
105 AT2G38820 Protein of unknown function (DUF506) -0.62 0.3 -0.3
106 AT2G01680 Ankyrin repeat family protein -0.62 0.31 -0.32
107 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.32 -0.31
108 AT3G63480 ATP binding microtubule motor family protein -0.62 0.3 -0.32
109 AT1G67870 glycine-rich protein -0.61 0.33 -0.34
110 AT5G10320 unknown protein; Has 54 Blast hits to 53 proteins in 19
species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0;
Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.61 0.34 -0.31
111 AT3G62970 zinc finger (C3HC4-type RING finger) family protein -0.61 0.32 -0.34
112 AT2G45740 peroxin 11D peroxin 11D -0.61 0.29 -0.31
113 AT2G02350 SKP1 interacting partner 3 Phloem protein 2-B9, SKP1
interacting partner 3		 -0.61 0.3 -0.31
114 AT1G60260 beta glucosidase 5 beta glucosidase 5 -0.61 0.29 -0.3
115 AT1G48470 glutamine synthetase 1;5 glutamine synthetase 1;5 -0.6 0.31 -0.33
116 AT4G22753 sterol 4-alpha methyl oxidase 1-3 ATSMO1-3, sterol 4-alpha methyl
oxidase 1-3		 -0.6 0.32 -0.31
117 AT4G13150 unknown protein; Has 83 Blast hits to 82 proteins in 37
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.6 0.32 -0.31
118 AT5G40500 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.31 -0.32
119 AT5G49120 Protein of unknown function (DUF581) -0.6 0.31 -0.31
120 AT2G33620 AT hook motif DNA-binding family protein -0.6 0.29 -0.32
121 AT4G01510 Arv1-like protein ARV2 -0.6 0.31 -0.31
122 AT2G07510 transposable element gene -0.59 0.31 -0.31
123 AT1G56620 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.59 0.32 -0.29
124 AT2G41760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function WDYHV (InterPro:IPR019161); Has 201 Blast
hits to 201 proteins in 90 species: Archae - 0; Bacteria -
2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).		 -0.59 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
125 C0215 PR_MST_2527.1 - - - 0.71 0.41 -0.43
126 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.65 0.45 -0.42 C0033