AT5G57450 : ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 (XRCC3).....
Query Information
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AGICode AT5G57450
Description homolog of X-ray repair cross complementing 3 (XRCC3)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G57450 homolog of X-ray repair cross complementing 3 (XRCC3) ARABIDOPSIS THALIANA HOMOLOG OF
X-RAY REPAIR CROSS COMPLEMENTING 3
(XRCC3), homolog of X-ray repair
cross complementing 3 (XRCC3)		 1 0.32 -0.32
2 AT3G54390 sequence-specific DNA binding transcription factors -0.77 0.33 -0.31
3 AT1G72760 Protein kinase superfamily protein -0.77 0.33 -0.32
4 AT1G52360 Coatomer, beta' subunit 0.76 0.32 -0.31
5 AT3G25280 Major facilitator superfamily protein 0.76 0.31 -0.34
6 AT5G48290 Heavy metal transport/detoxification superfamily protein 0.76 0.3 -0.32
7 AT5G39620 RAB GTPase homolog G1 RAB GTPase homolog G1, RAB GTPase
homolog G1		 0.75 0.31 -0.31
8 AT1G33320 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 0.74 0.31 -0.31
9 AT3G49710 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.29 -0.29
10 AT3G26150 cytochrome P450, family 71, subfamily B, polypeptide 16 cytochrome P450, family 71,
subfamily B, polypeptide 16		 0.73 0.33 -0.32
11 AT1G63120 RHOMBOID-like 2 RHOMBOID-like 2, RHOMBOID-like 2 -0.73 0.31 -0.28
12 AT5G66815 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.32 -0.33
13 AT4G31830 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.72 0.31 -0.32
14 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.72 0.33 -0.32
15 AT1G17690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Digestive organ
expansion factor, predicted (InterPro:IPR010678); Has 25006
Blast hits to 13379 proteins in 904 species: Archae - 102;
Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants -
1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink).		 nucleolar factor 1 0.72 0.31 -0.31
16 AT2G46800 zinc transporter of Arabidopsis thaliana A. THALIANA CATION DIFFUSION
FACILITATOR 1, ATMTP1, MTP1, zinc
transporter of Arabidopsis
thaliana, ZINC TRANSPORTER OF
ARABIDOPSIS THALIANA 1		 -0.72 0.34 -0.32
17 AT3G09880 Protein phosphatase 2A regulatory B subunit family protein ATB' BETA 0.71 0.33 -0.35
18 AT5G35640 Putative endonuclease or glycosyl hydrolase 0.71 0.31 -0.31
19 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.71 0.32 -0.33
20 AT2G37510 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.3 -0.33
21 AT1G43760 DNAse I-like superfamily protein 0.7 0.3 -0.31
22 AT5G12840 nuclear factor Y, subunit A1 ATHAP2A, EMBRYO DEFECTIVE 2220,
HAP2A, nuclear factor Y, subunit
A1		 -0.7 0.32 -0.32
23 AT1G53660 nodulin MtN21 /EamA-like transporter family protein 0.7 0.33 -0.29
24 AT1G10010 amino acid permease 8 amino acid permease 8, ATAAP8 -0.69 0.32 -0.32
25 AT4G37220 Cold acclimation protein WCOR413 family -0.69 0.3 -0.33
26 AT3G01260 Galactose mutarotase-like superfamily protein 0.69 0.31 -0.31
27 AT1G37537 transposable element gene 0.69 0.31 -0.33
28 AT5G51210 oleosin3 oleosin3 -0.69 0.31 -0.32
29 AT3G51680 NAD(P)-binding Rossmann-fold superfamily protein AtSDR2, short-chain
dehydrogenase/reductase 2		 0.68 0.31 -0.31
30 AT3G59630 diphthamide synthesis DPH2 family protein 0.68 0.3 -0.29
31 AT1G77550 tubulin-tyrosine ligases;tubulin-tyrosine ligases 0.68 0.32 -0.32
32 AT5G13130 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.68 0.33 -0.31
33 AT1G58210 kinase interacting family protein EMBRYO DEFECTIVE 1674 0.68 0.3 -0.33
34 AT5G27680 RECQ helicase SIM RECQ helicase SIM 0.68 0.32 -0.3
35 AT1G76710 SET domain group 26 ASH1 RELATED PROTEIN 1,
ASH1-RELATED PROTEIN 1, SET domain
group 26		 0.68 0.31 -0.32
36 AT3G49190 O-acyltransferase (WSD1-like) family protein 0.67 0.32 -0.3
37 AT3G63360 defensin-related 0.67 0.3 -0.31
38 AT1G17230 Leucine-rich receptor-like protein kinase family protein -0.67 0.31 -0.31
39 AT5G66890 Leucine-rich repeat (LRR) family protein 0.67 0.33 -0.32
40 AT5G49620 myb domain protein 78 myb domain protein 78, myb domain
protein 78		 -0.67 0.33 -0.32
41 AT4G38390 root hair specific 17 root hair specific 17 0.67 0.31 -0.31
42 AT2G42250 cytochrome P450, family 712, subfamily A, polypeptide 1 cytochrome P450, family 712,
subfamily A, polypeptide 1		 0.67 0.31 -0.31
43 AT3G01570 Oleosin family protein -0.67 0.32 -0.32
44 AT1G11190 bifunctional nuclease i bifunctional nuclease i,
ENDONUCLEASE 1		 -0.66 0.32 -0.32
45 AT3G27170 chloride channel B ATCLC-B, chloride channel B 0.66 0.33 -0.35
46 AT5G25290 F-box family protein with a domain of unknown function
(DUF295)		 0.66 0.32 -0.31
47 AT1G23280 MAK16 protein-related 0.66 0.31 -0.32
48 AT2G30780 Tetratricopeptide repeat (TPR)-like superfamily protein 0.65 0.32 -0.3
49 AT5G41180 leucine-rich repeat transmembrane protein kinase family
protein		 0.65 0.31 -0.33
50 AT5G57690 diacylglycerol kinase 4 ATDGK4, diacylglycerol kinase 4 0.65 0.34 -0.31
51 AT1G74770 zinc ion binding 0.65 0.32 -0.31
52 AT2G15660 AGAMOUS-like 95 AGAMOUS-like 95 0.65 0.32 -0.32
53 AT1G68150 WRKY DNA-binding protein 9 ATWRKY9, WRKY DNA-binding protein
9		 0.65 0.3 -0.31
54 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.65 0.3 -0.3
55 AT5G38820 Transmembrane amino acid transporter family protein 0.65 0.32 -0.3
56 AT5G45070 phloem protein 2-A8 phloem protein 2-A8, phloem
protein 2-A8		 0.65 0.31 -0.31
57 AT5G37300 O-acyltransferase (WSD1-like) family protein WSD1 -0.64 0.32 -0.32
58 AT1G22890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 17 Blast hits to 17
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.64 0.3 -0.32
59 AT5G01930 Glycosyl hydrolase superfamily protein AtMAN6, endo-beta-mannase 6 -0.64 0.31 -0.32
60 AT1G23070 Protein of unknown function (DUF300) -0.64 0.31 -0.29
61 AT5G53520 oligopeptide transporter 8 oligopeptide transporter 8,
oligopeptide transporter 8		 0.64 0.33 -0.32
62 AT5G64905 elicitor peptide 3 precursor elicitor peptide 3 precursor 0.64 0.33 -0.32
63 AT1G61410 DNA double-strand break repair and VJ recombination XRCC4 -0.64 0.3 -0.32
64 AT3G14595 Ribosomal protein L18ae family -0.64 0.29 -0.34
65 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.64 0.33 -0.31
66 ATCG00500 acetyl-CoA carboxylase carboxyl transferase subunit beta acetyl-CoA carboxylase carboxyl
transferase subunit beta		 -0.64 0.32 -0.31
67 AT1G54830 nuclear factor Y, subunit C3 nuclear factor Y, subunit C3 -0.64 0.32 -0.3
68 AT1G08630 threonine aldolase 1 threonine aldolase 1 -0.64 0.34 -0.32
69 AT2G35390 Phosphoribosyltransferase family protein 0.64 0.3 -0.3
70 AT3G47510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15
proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.63 0.33 -0.31
71 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 0.63 0.34 -0.33
72 AT2G10630 transposable element gene -0.63 0.32 -0.32
73 AT4G10250 HSP20-like chaperones superfamily protein ATHSP22.0 -0.63 0.32 -0.31
74 AT1G57570 Mannose-binding lectin superfamily protein 0.63 0.32 -0.31
75 AT3G57680 Peptidase S41 family protein -0.63 0.31 -0.31
76 AT1G51270 structural molecules;transmembrane receptors;structural
molecules		 0.63 0.29 -0.32
77 AT3G58280 Arabidopsis phospholipase-like protein (PEARLI 4) with
TRAF-like domain		 0.63 0.33 -0.31
78 AT4G08970 transposable element gene -0.63 0.3 -0.32
79 AT1G50080 BEST Arabidopsis thaliana protein match is: RNA-directed
DNA polymerase (reverse transcriptase)-related family
protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.63 0.32 -0.32
80 AT2G34440 AGAMOUS-like 29 AGAMOUS-like 29 -0.63 0.33 -0.31
81 AT5G53635 F-box/RNI-like/FBD-like domains-containing protein 0.63 0.32 -0.31
82 AT1G11915 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.33 -0.32
83 AT3G27930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; Has 35
Blast hits to 35 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.32
84 AT1G07795 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits
to 38 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.31 -0.3
85 AT3G03150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast
hits to 39 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.32
86 AT2G45930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G16090.1); Has 161 Blast hits to
161 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.33 -0.31
87 AT1G61370 S-locus lectin protein kinase family protein 0.63 0.35 -0.31
88 AT5G47390 myb-like transcription factor family protein -0.63 0.31 -0.33
89 AT3G04900 Heavy metal transport/detoxification superfamily protein -0.63 0.33 -0.29
90 AT5G34800 transposable element gene 0.63 0.33 -0.32
91 AT3G62880 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-4 -0.62 0.31 -0.35
92 AT4G36940 nicotinate phosphoribosyltransferase 1 nicotinate
phosphoribosyltransferase 1		 0.62 0.32 -0.33
93 AT3G59940 Galactose oxidase/kelch repeat superfamily protein -0.62 0.3 -0.3
94 AT5G48500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.31 -0.32
95 AT1G64440 NAD(P)-binding Rossmann-fold superfamily protein ROOT EPIDERMAL BULGER1, ROOT HAIR
DEFECTIVE 1, UDP-GLUCOSE
4-EPIMERASE		 0.62 0.31 -0.31
96 AT4G21500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast
hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.62 0.31 -0.3
97 AT5G35380 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.62 0.31 -0.3
98 AT2G35150 EXORDIUM like 1 EXORDIUM LIKE 7 0.62 0.34 -0.33
99 AT3G50980 dehydrin xero 1 dehydrin xero 1 -0.62 0.31 -0.29
100 AT5G09380 RNA polymerase III RPC4 0.62 0.33 -0.33
101 AT1G09520 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, PHD-type, conserved site
(InterPro:IPR019786); BEST Arabidopsis thaliana protein
match is: PHD finger family protein (TAIR:AT3G17460.1); Has
56 Blast hits to 56 proteins in 17 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.62 0.32 -0.33
102 AT5G51260 HAD superfamily, subfamily IIIB acid phosphatase -0.62 0.3 -0.31
103 AT3G53540 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in
206 species: Archae - 2; Bacteria - 409; Metazoa - 304;
Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes -
485 (source: NCBI BLink).		 -0.62 0.32 -0.31
104 AT1G04560 AWPM-19-like family protein -0.62 0.32 -0.32
105 ATCG00065 ribosomal protein S12A RIBOSOMAL PROTEIN S12, ribosomal
protein S12A		 -0.61 0.32 -0.32
106 AT5G57800 Fatty acid hydroxylase superfamily ECERIFERUM 3, FACELESS POLLEN 1,
WAX2, YRE		 -0.61 0.31 -0.33
107 AT4G07740 Protein of unknown function (DUF3287) -0.61 0.3 -0.32
108 AT3G01590 Galactose mutarotase-like superfamily protein -0.61 0.31 -0.31
109 AT4G12410 SAUR-like auxin-responsive protein family -0.61 0.32 -0.34
110 AT3G21520 DUF679 domain membrane protein 1 Arabidopsis thaliana DUF679 domain
membrane protein 1, DUF679 domain
membrane protein 1		 -0.61 0.31 -0.33
111 AT1G65090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G36100.1); Has 1435 Blast hits
to 1033 proteins in 192 species: Archae - 0; Bacteria - 61;
Metazoa - 511; Fungi - 123; Plants - 100; Viruses - 42;
Other Eukaryotes - 598 (source: NCBI BLink).		 -0.61 0.3 -0.32
112 AT5G60910 AGAMOUS-like 8 AGAMOUS-like 8, FRUITFULL -0.61 0.32 -0.31
113 AT1G68610 PLANT CADMIUM RESISTANCE 11 PLANT CADMIUM RESISTANCE 11 -0.61 0.32 -0.32
114 AT3G21660 UBX domain-containing protein -0.6 0.31 -0.31
115 AT2G06020 Homeodomain-like superfamily protein -0.6 0.32 -0.32
116 AT5G19640 Major facilitator superfamily protein -0.6 0.31 -0.3
117 AT5G50230 Transducin/WD40 repeat-like superfamily protein -0.6 0.3 -0.31
118 AT1G67100 LOB domain-containing protein 40 LOB domain-containing protein 40 -0.6 0.33 -0.31
119 AT5G48150 GRAS family transcription factor phytochrome a signal transduction
1		 -0.6 0.31 -0.31
120 AT3G51770 tetratricopeptide repeat (TPR)-containing protein ARABIDOPSIS ETHYLENE OVERPRODUCER
1, ETHYLENE OVERPRODUCER 1		 -0.6 0.31 -0.34
121 AT1G11270 F-box and associated interaction domains-containing protein -0.6 0.29 -0.31
122 AT2G29380 highly ABA-induced PP2C gene 3 highly ABA-induced PP2C gene 3 -0.6 0.31 -0.3
123 AT2G04038 basic leucine-zipper 48 basic leucine-zipper 48, basic
leucine-zipper 48		 -0.6 0.31 -0.31
124 AT3G45830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in
100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi
- 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131
(source: NCBI BLink).		 -0.6 0.3 -0.33
125 AT3G29660 transposable element gene -0.6 0.31 -0.31