AT5G57280 : root initiation defective 2
Query Information
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AGICode AT5G57280
Description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 1 0.32 -0.3
2 AT4G28450 nucleotide binding;protein binding 0.88 0.32 -0.31
3 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.88 0.31 -0.34
4 AT2G32220 Ribosomal L27e protein family 0.87 0.31 -0.32
5 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.87 0.32 -0.32
6 AT2G44860 Ribosomal protein L24e family protein 0.86 0.32 -0.32
7 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.86 0.3 -0.31
8 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.86 0.31 -0.29
9 AT4G31180 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.86 0.32 -0.31
10 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.86 0.3 -0.31
11 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.86 0.33 -0.3
12 AT3G23990 heat shock protein 60 heat shock protein 60, HEAT SHOCK
PROTEIN 60-3B		 0.86 0.3 -0.34
13 AT3G25940 TFIIB zinc-binding protein 0.85 0.32 -0.32
14 AT1G42440 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948),
Protein of unknown function DUF663 (InterPro:IPR007034);
BEST Arabidopsis thaliana protein match is: P-loop
containing nucleoside triphosphate hydrolases superfamily
protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088
proteins in 291 species: Archae - 2; Bacteria - 131;
Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49;
Other Eukaryotes - 905 (source: NCBI BLink).		 0.85 0.31 -0.34
15 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.31 -0.32
16 AT4G15770 RNA binding 0.85 0.31 -0.31
17 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.85 0.33 -0.32
18 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.85 0.34 -0.32
19 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 0.85 0.32 -0.3
20 AT3G13230 RNA-binding KH domain-containing protein 0.85 0.34 -0.33
21 AT1G75670 DNA-directed RNA polymerases 0.84 0.33 -0.33
22 AT4G01560 Ribosomal RNA processing Brix domain protein maternal effect embryo arrest 49 0.84 0.31 -0.3
23 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.84 0.34 -0.31
24 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.84 0.31 -0.3
25 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 0.84 0.33 -0.32
26 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 0.84 0.34 -0.32
27 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.83 0.31 -0.32
28 AT1G66070 Translation initiation factor eIF3 subunit 0.83 0.32 -0.3
29 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.83 0.32 -0.31
30 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.83 0.34 -0.33
31 AT3G51800 metallopeptidase M24 family protein A. THALIANA ERBB-3 BINDING PROTEIN
1, ATG2, ERBB-3 BINDING PROTEIN 1		 0.83 0.3 -0.33
32 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.83 0.3 -0.32
33 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 0.82 0.32 -0.33
34 AT1G54770 Fcf2 pre-rRNA processing protein 0.82 0.31 -0.34
35 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.82 0.3 -0.31
36 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.82 0.31 -0.3
37 AT3G46560 Tim10/DDP family zinc finger protein embryo defective 2474, TIM9 0.82 0.31 -0.3
38 AT3G13860 heat shock protein 60-3A heat shock protein 60-3A 0.82 0.32 -0.33
39 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.82 0.31 -0.33
40 AT3G21140 Pyridoxamine 5'-phosphate oxidase family protein 0.82 0.32 -0.3
41 AT1G55900 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 embryo defective 1860, TIM50 0.82 0.31 -0.32
42 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.82 0.31 -0.33
43 AT2G44510 CDK inhibitor P21 binding protein 0.82 0.3 -0.31
44 AT2G19540 Transducin family protein / WD-40 repeat family protein 0.82 0.3 -0.29
45 AT2G40420 Transmembrane amino acid transporter family protein -0.81 0.33 -0.31
46 AT4G18040 eukaryotic translation initiation factor 4E ARABIDOPSIS THALIANA EUKARYOTIC
TRANSLATION INITATION FACTOR 4E1,
CUCUMOVIRUS MULTIPLICATION 1,
eukaryotic translation initiation
factor 4E, eukaryotic translation
Initiation Factor 4E1		 0.81 0.32 -0.34
47 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.81 0.34 -0.31
48 AT3G55605 Mitochondrial glycoprotein family protein 0.81 0.32 -0.33
49 AT3G04710 ankyrin repeat family protein tetratricopeptide repeat 10 0.81 0.31 -0.3
50 AT5G06550 CONTAINS InterPro DOMAIN/s: Transcription factor
jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347),
F-box domain, Skp2-like (InterPro:IPR022364), Transcription
factor jumonji (InterPro:IPR013129); BEST Arabidopsis
thaliana protein match is: transferases, transferring
glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to
1747 proteins in 292 species: Archae - 0; Bacteria - 297;
Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0;
Other Eukaryotes - 199 (source: NCBI BLink).		 0.81 0.33 -0.32
51 AT5G55920 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 OLIGOCELLULA 2 0.81 0.3 -0.29
52 AT4G23540 ARM repeat superfamily protein 0.81 0.32 -0.31
53 AT1G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 40 Blast hits to 40 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.81 0.32 -0.35
54 AT3G15080 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.81 0.32 -0.32
55 AT5G06360 Ribosomal protein S8e family protein 0.8 0.31 -0.31
56 AT1G52930 Ribosomal RNA processing Brix domain protein 0.8 0.32 -0.32
57 AT1G80750 Ribosomal protein L30/L7 family protein 0.8 0.3 -0.32
58 AT3G18165 modifier of snc1,4 Modifier of snc1,4 0.8 0.32 -0.32
59 AT5G02500 heat shock cognate protein 70-1 ARABIDOPSIS THALIANA HEAT SHOCK
COGNATE PROTEIN 70-1, AtHsp70-1,
HEAT SHOCK COGNATE PROTEIN 70,
heat shock cognate protein 70-1,
HEAT SHOCK PROTEIN 70-1		 0.8 0.32 -0.35
60 AT3G22320 Eukaryotic rpb5 RNA polymerase subunit family protein ATRPABC24.3, NRPB5, NRPD5, RNA
POLYMERASE II FIFTH LARGEST
SUBUNIT, A		 0.8 0.31 -0.33
61 AT4G24440 transcription initiation factor IIA gamma chain /
TFIIA-gamma (TFIIA-S)		 0.8 0.31 -0.31
62 AT1G13160 ARM repeat superfamily protein 0.8 0.3 -0.32
63 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.32 -0.32
64 AT4G38710 glycine-rich protein 0.79 0.3 -0.3
65 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.79 0.29 -0.32
66 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.79 0.3 -0.31
67 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.79 0.32 -0.32
68 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 0.79 0.33 -0.31
69 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.79 0.32 -0.31
70 AT1G55150 DEA(D/H)-box RNA helicase family protein 0.79 0.3 -0.32
71 AT5G22840 Protein kinase superfamily protein 0.79 0.31 -0.33
72 AT5G62440 Protein of unknown function (DUF3223) 0.79 0.34 -0.34
73 AT3G13940 DNA binding;DNA-directed RNA polymerases 0.78 0.32 -0.31
74 AT1G43860 sequence-specific DNA binding transcription factors 0.78 0.32 -0.31
75 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylases 0.78 0.3 -0.32
76 AT5G53770 Nucleotidyltransferase family protein 0.78 0.31 -0.3
77 AT2G16500 arginine decarboxylase 1 arginine decarboxylase 1, ARGDC,
ARGDC1, SPE1		 0.78 0.32 -0.32
78 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.78 0.33 -0.32
79 AT5G44370 phosphate transporter 4;6 phosphate transporter 4;6 0.78 0.32 -0.3
80 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.78 0.31 -0.33
81 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN		 0.78 0.33 -0.3
82 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.32 -0.32
83 AT5G59980 Polymerase/histidinol phosphatase-like 0.78 0.31 -0.3
84 AT5G40530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.78 0.33 -0.32
85 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.77 0.33 -0.3
86 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.77 0.34 -0.34
87 AT4G05440 temperature sensing protein-related embryo sac development arrest 35 0.77 0.31 -0.3
88 AT1G27050 homeobox protein 54 0.77 0.32 -0.31
89 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.77 0.31 -0.33
90 AT3G02190 Ribosomal protein L39 family protein 0.77 0.31 -0.31
91 AT1G61640 Protein kinase superfamily protein 0.77 0.31 -0.32
92 AT2G19385 zinc ion binding 0.77 0.31 -0.29
93 AT4G38890 FMN-linked oxidoreductases superfamily protein 0.77 0.31 -0.31
94 AT4G02230 Ribosomal protein L19e family protein 0.77 0.33 -0.3
95 AT1G73920 alpha/beta-Hydrolases superfamily protein -0.76 0.33 -0.32
96 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.74 0.31 -0.31
97 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.33 -0.32
98 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.73 0.3 -0.32
99 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.73 0.32 -0.32
100 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.73 0.31 -0.34
101 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.72 0.28 -0.31
102 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.71 0.32 -0.31
103 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.7 0.34 -0.31
104 AT2G41870 Remorin family protein -0.7 0.34 -0.31
105 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.7 0.31 -0.3
106 AT4G33960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.33 -0.3
107 AT1G19835 Plant protein of unknown function (DUF869) -0.69 0.29 -0.29
108 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.69 0.3 -0.3
109 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.68 0.29 -0.32
110 AT3G14067 Subtilase family protein -0.68 0.33 -0.31
111 AT1G79420 Protein of unknown function (DUF620) -0.67 0.31 -0.3
112 AT1G04770 Tetratricopeptide repeat (TPR)-like superfamily protein -0.67 0.32 -0.34
113 AT3G20420 RNAse THREE-like protein 2 RNASEIII-LIKE 2, RNAse THREE-like
protein 2		 -0.67 0.31 -0.31
114 AT5G25280 serine-rich protein-related -0.66 0.32 -0.31
115 AT5G01770 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1A, RAPTOR1A, RAPTOR2 -0.65 0.32 -0.29
116 AT3G26510 Octicosapeptide/Phox/Bem1p family protein -0.65 0.31 -0.32
117 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.64 0.32 -0.31
118 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding -0.64 0.31 -0.3
119 AT4G16750 Integrase-type DNA-binding superfamily protein -0.63 0.33 -0.34
120 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.63 0.31 -0.31
121 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.32 -0.32
122 AT2G20770 GCR2-like 2 GCR2-like 2 -0.63 0.31 -0.3
123 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 -0.62 0.3 -0.31
124 AT2G20670 Protein of unknown function (DUF506) -0.61 0.31 -0.34
125 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.61 0.33 -0.34
126 AT5G52880 F-box family protein -0.61 0.3 -0.31
127 AT5G14510 ARM repeat superfamily protein -0.61 0.34 -0.31
128 AT4G20820 FAD-binding Berberine family protein -0.61 0.32 -0.3
129 AT5G57670 Protein kinase superfamily protein -0.61 0.3 -0.32
130 AT4G08160 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.6 0.29 -0.33