AT5G56950 : nucleosome assembly protein 1;3
Query Information
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AGICode AT5G56950
Description nucleosome assembly protein 1;3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G56950 nucleosome assembly protein 1;3 nucleosome assembly protein 1;3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 03,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A3		 1 0.3 -0.32
2 AT2G44790 uclacyanin 2 uclacyanin 2 0.83 0.3 -0.31
3 AT3G19620 Glycosyl hydrolase family protein -0.82 0.32 -0.31
4 AT5G17520 root cap 1 (RCP1) MALTOSE EXCESS 1, ROOT CAP 1 -0.8 0.32 -0.31
5 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.8 0.32 -0.33
6 AT2G40360 Transducin/WD40 repeat-like superfamily protein 0.79 0.3 -0.32
7 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 0.79 0.31 -0.31
8 AT5G17820 Peroxidase superfamily protein 0.78 0.34 -0.29
9 AT5G49560 Putative methyltransferase family protein 0.78 0.32 -0.31
10 AT1G01240 unknown protein; INVOLVED IN: N-terminal protein
myristoylation; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G46550.1); Has 95 Blast hits to 78 proteins in 16
species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0;
Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.78 0.33 -0.31
11 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.78 0.32 -0.31
12 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.78 0.34 -0.31
13 AT1G60850 DNA-directed RNA polymerase family protein AAC42, ATRPAC42 0.77 0.3 -0.32
14 AT1G09780 Phosphoglycerate mutase,
2,3-bisphosphoglycerate-independent		 2,3-biphosphoglycerate-independent
phosphoglycerate mutase 1		 0.77 0.32 -0.31
15 AT1G52050 Mannose-binding lectin superfamily protein 0.77 0.32 -0.3
16 AT3G14067 Subtilase family protein -0.77 0.34 -0.31
17 AT3G15357 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: shoot apex,
hypocotyl, root, leaf; Has 6931 Blast hits to 2036 proteins
in 230 species: Archae - 7; Bacteria - 933; Metazoa - 1824;
Fungi - 836; Plants - 482; Viruses - 218; Other Eukaryotes
- 2631 (source: NCBI BLink).		 0.77 0.31 -0.3
18 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.77 0.29 -0.32
19 AT5G25220 KNOTTED1-like homeobox gene 3 KNOTTED1-like homeobox gene 3 -0.77 0.3 -0.33
20 AT5G59240 Ribosomal protein S8e family protein 0.77 0.31 -0.33
21 AT1G78680 gamma-glutamyl hydrolase 2 gamma-glutamyl hydrolase 2,
gamma-glutamyl hydrolase 2		 -0.77 0.33 -0.3
22 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.77 0.34 -0.33
23 AT3G26610 Pectin lyase-like superfamily protein 0.77 0.32 -0.29
24 AT1G71400 receptor like protein 12 receptor like protein 12, receptor
like protein 12		 0.76 0.32 -0.31
25 AT1G61570 translocase of the inner mitochondrial membrane 13 translocase of the inner
mitochondrial membrane 13		 0.76 0.31 -0.31
26 AT1G49540 elongator protein 2 Elongator subunit 2, elongator
protein 2		 0.76 0.3 -0.33
27 AT4G19210 RNAse l inhibitor protein 2 ATP-binding cassette E2,
ARABIDOPSIS THALIANA RNASE L
INHIBITOR PROTEIN 2, RNAse l
inhibitor protein 2		 0.76 0.3 -0.3
28 AT3G03870 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits
to 41 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.32 -0.32
29 AT1G06900 Insulinase (Peptidase family M16) family protein 0.76 0.31 -0.31
30 AT1G52160 tRNAse Z3 tRNAse Z3 0.76 0.32 -0.31
31 AT4G37000 accelerated cell death 2 (ACD2) ACCELERATED CELL DEATH 2,
ARABIDOPSIS THALIANA RED
CHLOROPHYLL CATABOLITE REDUCTASE		 -0.76 0.31 -0.31
32 AT1G14210 Ribonuclease T2 family protein 0.76 0.3 -0.31
33 AT3G13040 myb-like HTH transcriptional regulator family protein -0.76 0.3 -0.32
34 AT1G23410 Ribosomal protein S27a / Ubiquitin family protein 0.75 0.32 -0.32
35 AT4G24450 phosphoglucan, water dikinase ATGWD2, GWD3, phosphoglucan, water
dikinase		 -0.75 0.34 -0.31
36 AT5G20400 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.75 0.33 -0.32
37 AT3G23430 phosphate 1 ARABIDOPSIS PHOSPHATE 1, phosphate
1		 0.75 0.33 -0.31
38 AT2G34300 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.75 0.33 -0.32
39 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 -0.75 0.32 -0.28
40 AT2G30790 photosystem II subunit P-2 photosystem II subunit P-2 -0.75 0.32 -0.32
41 AT2G41870 Remorin family protein -0.75 0.31 -0.31
42 AT5G60730 Anion-transporting ATPase 0.75 0.29 -0.32
43 AT2G45990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 312
Blast hits to 312 proteins in 90 species: Archae - 0;
Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 -0.75 0.33 -0.34
44 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.74 0.3 -0.32
45 AT1G13090 cytochrome P450, family 71, subfamily B, polypeptide 28 cytochrome P450, family 71,
subfamily B, polypeptide 28		 -0.74 0.35 -0.31
46 AT2G28190 copper/zinc superoxide dismutase 2 copper/zinc superoxide dismutase
2, COPPER/ZINC SUPEROXIDE
DISMUTASE 2		 0.74 0.31 -0.31
47 AT1G61770 Chaperone DnaJ-domain superfamily protein 0.74 0.29 -0.3
48 AT5G64100 Peroxidase superfamily protein 0.74 0.34 -0.33
49 AT3G23690 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.74 0.29 -0.33
50 AT5G60960 Pentatricopeptide repeat (PPR) superfamily protein PPR protein localized to the
nucleus and mitochondria 1		 0.74 0.33 -0.32
51 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.73 0.31 -0.35
52 AT1G51380 DEA(D/H)-box RNA helicase family protein 0.73 0.28 -0.33
53 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.73 0.29 -0.31
54 AT1G18710 myb domain protein 47 myb domain protein 47, myb domain
protein 47		 -0.73 0.29 -0.29
55 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 -0.73 0.33 -0.32
56 AT1G14610 valyl-tRNA synthetase / valine--tRNA ligase (VALRS) TWIN 2, VALYL TRNA SYNTHETASE 0.73 0.31 -0.32
57 AT1G71480 Nuclear transport factor 2 (NTF2) family protein -0.72 0.3 -0.31
58 AT1G28230 purine permease 1 ATPUP1, purine permease 1 -0.72 0.33 -0.31
59 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 0.72 0.32 -0.32
60 AT4G19030 NOD26-like major intrinsic protein 1 AT-NLM1, NOD26-LIKE MAJOR
INTRINSIC PROTEIN 1, NOD26-LIKE
INTRINSIC PROTEIN 1;1, NOD26-like
major intrinsic protein 1		 0.72 0.3 -0.31
61 AT5G50160 ferric reduction oxidase 8 FERRIC REDUCTION OXIDASE 8, ferric
reduction oxidase 8		 -0.72 0.32 -0.29
62 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.72 0.33 -0.31
63 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.72 0.28 -0.31
64 AT3G02350 galacturonosyltransferase 9 galacturonosyltransferase 9 0.72 0.32 -0.32
65 AT2G40660 Nucleic acid-binding, OB-fold-like protein 0.72 0.31 -0.32
66 AT5G47640 nuclear factor Y, subunit B2 nuclear factor Y, subunit B2 -0.72 0.31 -0.31
67 AT5G19040 isopentenyltransferase 5 Arabidopsis thaliana
ISOPENTENYLTRANSFERASE 5,
isopentenyltransferase 5		 0.72 0.31 -0.33
68 AT3G59020 ARM repeat superfamily protein 0.72 0.31 -0.31
69 AT5G47540 Mo25 family protein 0.72 0.3 -0.3
70 AT1G73470 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 72 Blast hits to 72 proteins
in 35 species: Archae - 0; Bacteria - 50; Metazoa - 0;
Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.72 0.33 -0.29
71 AT5G40510 Sucrase/ferredoxin-like family protein 0.72 0.31 -0.31
72 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.72 0.31 -0.32
73 AT5G01820 serine/threonine protein kinase 1 ATCIPK14, serine/threonine protein
kinase 1, CBL-INTERACTING PROTEIN
KINASE 14, SOS2-like protein
kinase 24, SNF1-RELATED PROTEIN
KINASE 3.15, serine/threonine
protein kinase 1		 -0.72 0.34 -0.32
74 AT5G06480 Immunoglobulin E-set superfamily protein -0.71 0.32 -0.32
75 AT5G19140 Aluminium induced protein with YGL and LRDR motifs AILP1, ATAILP1 -0.71 0.32 -0.3
76 AT1G63780 Ribosomal RNA processing Brix domain protein IMP4 0.71 0.3 -0.32
77 AT3G52950 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing
protein		 0.71 0.33 -0.33
78 AT4G30190 H(+)-ATPase 2 H(+)-ATPase 2, H(+)-ATPase 2,
PLASMA MEMBRANE PROTON ATPASE 2		 0.71 0.29 -0.33
79 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.71 0.32 -0.33
80 AT1G53200 unknown protein; Has 21 Blast hits to 21 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.32 -0.32
81 AT5G57980 RNA polymerase II fifth largest subunit, C RNA polymerase II fifth largest
subunit, C		 0.71 0.31 -0.32
82 AT3G04580 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 ETHYLENE INSENSITIVE 4 0.71 0.31 -0.31
83 AT1G29395 COLD REGULATED 314 INNER MEMBRANE 1 COLD REGULATED 314 THYLAKOID
MEMBRANE 1, COLD REGULATED 314
INNER MEMBRANE 1, cold regulated
414 thylakoid membrane 1		 -0.7 0.32 -0.31
84 AT4G04750 Major facilitator superfamily protein -0.7 0.31 -0.31
85 AT3G45900 Ribonuclease P protein subunit P38-related -0.7 0.32 -0.3
86 AT2G46550 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits
to 68 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.3 -0.31
87 AT1G29390 cold regulated 314 thylakoid membrane 2 cold regulated 314 thylakoid
membrane 2, COLD REGULATED 314
INNER MEMBRANE 2		 -0.7 0.33 -0.3
88 AT2G40435 BEST Arabidopsis thaliana protein match is: transcription
regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289
proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.7 0.33 -0.32
89 AT4G29070 Phospholipase A2 family protein -0.69 0.3 -0.3
90 AT3G24760 Galactose oxidase/kelch repeat superfamily protein -0.69 0.3 -0.33
91 AT2G01400 unknown protein; Has 19 Blast hits to 19 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.34 -0.32
92 AT4G15440 hydroperoxide lyase 1 CYP74B2, hydroperoxide lyase 1 -0.69 0.33 -0.33
93 AT5G67180 target of early activation tagged (EAT) 3 target of early activation tagged
(EAT) 3		 -0.69 0.3 -0.31
94 AT3G18490 Eukaryotic aspartyl protease family protein -0.68 0.31 -0.31
95 AT1G68540 NAD(P)-binding Rossmann-fold superfamily protein cinnamoyl coA reductase-like 6,
tetraketide alpha-pyrone reductase
2		 -0.68 0.32 -0.31
96 AT2G19780 Leucine-rich repeat (LRR) family protein -0.68 0.3 -0.31
97 AT2G39450 Cation efflux family protein ATMTP11, MTP11 -0.68 0.31 -0.3
98 AT1G19330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits
to 145 proteins in 43 species: Archae - 0; Bacteria - 0;
Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.68 0.3 -0.31
99 AT4G02420 Concanavalin A-like lectin protein kinase family protein -0.67 0.32 -0.32
100 AT5G08590 SNF1-related protein kinase 2.1 ARABIDOPSIS SERINE/THREONINE
KINASE 2, ARABIDOPSIS SKP1-LIKE1,
SNRK2-1, SNF1-related protein
kinase 2.1, SRK2G		 -0.67 0.32 -0.33
101 AT1G70160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in
20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.67 0.31 -0.3
102 AT3G21270 DOF zinc finger protein 2 DOF zinc finger protein 2, DOF
zinc finger protein 2		 -0.67 0.31 -0.29
103 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 -0.67 0.32 -0.32
104 AT4G14500 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.67 0.3 -0.31
105 AT2G03530 ureide permease 2 ARABIDOPSIS THALIANA UREIDE
PERMEASE 2, ureide permease 2		 -0.67 0.33 -0.31
106 AT5G03650 starch branching enzyme 2.2 starch branching enzyme 2.2 -0.67 0.3 -0.31
107 AT1G22710 sucrose-proton symporter 2 ARABIDOPSIS THALIANA
SUCROSE-PROTON SYMPORTER 2,
sucrose-proton symporter 2,
SUCROSE TRANSPORTER 1		 -0.67 0.31 -0.31
108 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 -0.67 0.32 -0.32
109 AT4G34480 O-Glycosyl hydrolases family 17 protein -0.66 0.34 -0.31
110 AT3G54820 plasma membrane intrinsic protein 2;5 plasma membrane intrinsic protein
2;5, PLASMA MEMBRANE INTRINSIC
PROTEIN 2D		 -0.66 0.33 -0.33
111 AT2G23840 HNH endonuclease -0.66 0.32 -0.33
112 AT5G48370 Thioesterase/thiol ester dehydrase-isomerase superfamily
protein		 -0.66 0.3 -0.33
113 AT3G21360 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.31 -0.32
114 AT2G21340 MATE efflux family protein -0.66 0.34 -0.31
115 AT4G09600 GAST1 protein homolog 3 GAST1 protein homolog 3 -0.66 0.32 -0.32
116 AT1G50590 RmlC-like cupins superfamily protein -0.66 0.33 -0.29
117 AT3G23400 Plastid-lipid associated protein PAP / fibrillin family
protein		 fibrillin 4 -0.66 0.31 -0.32
118 AT3G19900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae -
0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).		 -0.66 0.32 -0.32
119 AT2G27290 Protein of unknown function (DUF1279) -0.66 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
120 C0125 isorhamnetin-3-O-glucoside - - - 0.8 0.42 -0.47
121 C0050 8-Methylthio-n-octylglucosinolate - 8-Methylthiooctyl glucosinolate glucosinolate biosynthesis from hexahomomethionine 0.78 0.42 -0.43 C0050
122 C0031 3-Methylthio-n-propylglucosinolate - 3-Methylthiopropylglucosinolate glucosinolate biosynthesis from homomethionine 0.74 0.44 -0.46 C0031
123 C0118 Hyperoside - Quercetin-3-glucoside quercetin glucoside biosynthesis (Arabidopsis),
rutin biosynthesis 		0.72 0.45 -0.45 C0118
124 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		-0.7 0.43 -0.42 C0210