AT5G56610 : -
Query Information
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AGICode AT5G56610
Description Phosphotyrosine protein phosphatases superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein 1 0.33 -0.31
2 AT2G21440 RNA-binding (RRM/RBD/RNP motifs) family protein -0.72 0.31 -0.34
3 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 -0.71 0.3 -0.3
4 AT3G06480 DEAD box RNA helicase family protein -0.71 0.29 -0.32
5 AT1G20960 U5 small nuclear ribonucleoprotein helicase, putative embryo defective 1507 -0.69 0.32 -0.3
6 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 -0.69 0.34 -0.33
7 AT1G33780 Protein of unknown function (DUF179) 0.67 0.31 -0.32
8 AT1G63810 CONTAINS InterPro DOMAIN/s: Nrap protein
(InterPro:IPR005554); Has 396 Blast hits to 382 proteins in
182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi
- 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60
(source: NCBI BLink).		 -0.66 0.33 -0.33
9 AT1G59580 mitogen-activated protein kinase homolog 2 mitogen-activated protein kinase
homolog 2, mitogen-activated
protein kinase homolog 2		 0.66 0.32 -0.28
10 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 -0.66 0.32 -0.33
11 AT3G54540 general control non-repressible 4 ATP-binding cassette F4, general
control non-repressible 4, general
control non-repressible 4		 -0.65 0.32 -0.33
12 AT1G78550 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.65 0.33 -0.29
13 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 -0.65 0.3 -0.31
14 AT5G53440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 -0.65 0.32 -0.31
15 AT2G36360 Galactose oxidase/kelch repeat superfamily protein 0.64 0.32 -0.31
16 AT1G48120 hydrolases;protein serine/threonine phosphatases -0.64 0.32 -0.33
17 AT5G16920 Fasciclin-like arabinogalactan family protein -0.64 0.33 -0.3
18 AT1G54850 HSP20-like chaperones superfamily protein 0.64 0.32 -0.3
19 AT1G06230 global transcription factor group E4 global transcription factor group
E4		 -0.64 0.33 -0.32
20 AT3G16990 Haem oxygenase-like, multi-helical 0.63 0.3 -0.32
21 AT1G23130 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.63 0.29 -0.31
22 AT1G27900 RNA helicase family protein -0.63 0.31 -0.33
23 AT1G48410 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 1 -0.63 0.3 -0.31
24 AT5G10870 chorismate mutase 2 chorismate mutase 2, chorismate
mutase 2		 0.62 0.31 -0.31
25 AT1G53510 mitogen-activated protein kinase 18 ARABIDOPSIS THALIANA MAP KINASE
18, mitogen-activated protein
kinase 18		 -0.62 0.32 -0.32
26 AT3G11020 DRE/CRT-binding protein 2B DEHYDRATION-RESPONSIVE ELEMENT
BINDING PROTEIN 2, DRE/CRT-binding
protein 2B		 -0.62 0.31 -0.31
27 AT3G09650 Tetratricopeptide repeat (TPR)-like superfamily protein CRM3, HIGH CHLOROPHYLL
FLUORESCENCE 152		 -0.62 0.31 -0.35
28 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain -0.62 0.33 -0.32
29 AT1G04080 Tetratricopeptide repeat (TPR)-like superfamily protein PRP39 -0.62 0.32 -0.31
30 AT1G01160 GRF1-interacting factor 2 GRF1-interacting factor 2 0.61 0.35 -0.31
31 AT4G12750 Homeodomain-like transcriptional regulator -0.61 0.32 -0.31
32 AT1G36990 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in
339 species: Archae - 2; Bacteria - 1372; Metazoa - 990;
Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes -
1593 (source: NCBI BLink).		 -0.61 0.32 -0.3
33 AT1G28060 Pre-mRNA-splicing factor 3 -0.61 0.32 -0.32
34 AT3G57890 Tubulin binding cofactor C domain-containing protein -0.61 0.3 -0.32
35 AT3G16840 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.31 -0.32
36 AT4G17140 pleckstrin homology (PH) domain-containing protein -0.6 0.33 -0.32
37 AT5G20200 nucleoporin-related -0.6 0.31 -0.32
38 AT1G15200 protein-protein interaction regulator family protein -0.6 0.33 -0.33
39 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.6 0.31 -0.32
40 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 -0.6 0.32 -0.31
41 AT2G03270 DNA-binding protein, putative -0.6 0.31 -0.32
42 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 -0.6 0.34 -0.32
43 AT3G52860 unknown protein; Has 86 Blast hits to 86 proteins in 36
species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi -
13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.6 0.33 -0.29
44 AT5G64270 splicing factor, putative -0.6 0.33 -0.32
45 AT3G10220 tubulin folding cofactor B EMBRYO DEFECTIVE 2804 0.6 0.34 -0.33
46 AT1G60890 Phosphatidylinositol-4-phosphate 5-kinase family protein -0.6 0.3 -0.33
47 AT5G17030 UDP-glucosyl transferase 78D3 UDP-glucosyl transferase 78D3 -0.6 0.31 -0.34
48 AT2G17510 ribonuclease II family protein EMBRYO DEFECTIVE 2763 -0.59 0.32 -0.32
49 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 -0.59 0.33 -0.33
50 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family 0.59 0.3 -0.32
51 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 -0.59 0.31 -0.3
52 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain -0.59 0.34 -0.33
53 AT5G49530 SIN-like family protein -0.59 0.33 -0.3
54 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 -0.59 0.35 -0.3
55 AT3G55320 P-glycoprotein 20 ATP-binding cassette B20,
P-glycoprotein 20		 -0.59 0.32 -0.32
56 AT4G37130 hydroxyproline-rich glycoprotein family protein -0.59 0.33 -0.3
57 AT1G53710 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.59 0.3 -0.33
58 AT3G18295 Protein of unknown function (DUF1639) 0.59 0.31 -0.32
59 AT5G44280 RING 1A ARABIDOPSIS THALIANA RING 1A, RING
1A		 -0.58 0.31 -0.33
60 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 -0.58 0.31 -0.3
61 AT4G33650 dynamin-related protein 3A ARABIDOPSIS DYNAMIN-LIKE 2,
ABERRANT PEROXISOME MORPHOLOGY 1,
dynamin-related protein 3A		 -0.58 0.32 -0.31
62 AT4G04670 Met-10+ like family protein / kelch repeat-containing
protein		 -0.58 0.33 -0.31
63 AT3G42360 transposable element gene -0.58 0.32 -0.3
64 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein -0.58 0.32 -0.32
65 AT3G61540 alpha/beta-Hydrolases superfamily protein 0.57 0.31 -0.31
66 AT2G39940 RNI-like superfamily protein CORONATINE INSENSITIVE 1 -0.57 0.32 -0.29
67 AT3G32180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G32160.1); Has 37 Blast hits
to 25 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.3 -0.31
68 AT1G14650 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein / ubiquitin family protein		 -0.57 0.32 -0.28
69 AT2G22125 binding cellulose synthase-interactive
protein 1, POM-POM 2		 -0.57 0.32 -0.32
70 AT2G39090 tetratricopeptide repeat (TPR)-containing protein anaphase-promoting complex 7,
AtAPC7		 0.57 0.32 -0.32
71 AT2G18470 roline-rich extensin-like receptor kinase 4 proline-rich extensin-like
receptor kinase 4, proline-rich
extensin-like receptor kinase 4		 0.57 0.31 -0.33
72 AT3G03580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.31 -0.32
73 AT5G52630 mitochondrial RNAediting factor 1 mitochondrial RNAediting factor 1 -0.57 0.32 -0.33
74 AT2G27090 Protein of unknown function (DUF630 and DUF632) -0.56 0.29 -0.31
75 AT5G46210 cullin4 ATCUL4, cullin4 -0.56 0.32 -0.31
76 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 -0.56 0.31 -0.3
77 AT5G05560 E3 ubiquitin ligase, putative EMBRYO DEFECTIVE 2771 -0.56 0.31 -0.31
78 AT4G19670 RING/U-box superfamily protein 0.56 0.32 -0.32
79 AT3G13845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.56 0.32 -0.31
80 AT3G66652 fip1 motif-containing protein -0.56 0.31 -0.31
81 AT4G03550 glucan synthase-like 5 glucan synthase-like 5, ATGSL5,
GSL05, glucan synthase-like 5,
GLUCAN SYNTHASE-LIKE 5, POWDERY
MILDEW RESISTANT 4		 -0.56 0.31 -0.31
82 AT1G80070 Pre-mRNA-processing-splicing factor EMBRYO DEFECTIVE 14, EMBRYO
DEFECTIVE 177, EMBRYO DEFECTIVE
33, ABNORMAL SUSPENSOR 2		 -0.56 0.29 -0.3
83 AT1G31100 transposable element gene -0.56 0.33 -0.31
84 AT5G38560 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 8, proline-rich
extensin-like receptor kinase 8		 -0.56 0.33 -0.28
85 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 -0.56 0.33 -0.31
86 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 -0.56 0.32 -0.3
87 AT5G42950 GYF domain-containing protein -0.55 0.31 -0.31
88 AT2G36480 ENTH/VHS family protein -0.55 0.31 -0.33
89 AT3G23900 RNA recognition motif (RRM)-containing protein -0.55 0.31 -0.31
90 AT1G50200 Alanyl-tRNA synthetase ACD, Alanyl-tRNA synthetase -0.55 0.31 -0.32
91 AT2G18915 LOV KELCH protein 2 ADAGIO 2, LOV KELCH protein 2 -0.55 0.3 -0.31
92 AT4G00780 TRAF-like family protein 0.55 0.3 -0.31
93 AT1G03190 RAD3-like DNA-binding helicase protein ARABIDOPSIS THALIANA XERODERMA
PIGMENTOSUM GROUP D, ULTRAVIOLET
HYPERSENSITIVE 6		 -0.55 0.31 -0.32
94 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 -0.55 0.3 -0.31
95 AT1G13410 Tetratricopeptide repeat (TPR)-like superfamily protein -0.55 0.32 -0.32
96 AT1G20080 Calcium-dependent lipid-binding (CaLB domain) family
protein		 ATSYTB, NTMC2T1.2, NTMC2TYPE1.2,
synaptotagmin 2, SYTB		 -0.55 0.32 -0.32
97 AT5G62600 ARM repeat superfamily protein modifier of snc1-1, 14 -0.55 0.31 -0.33
98 AT1G55930 CBS domain-containing protein / transporter associated
domain-containing protein		 -0.55 0.31 -0.32
99 AT3G42710 transposable element gene -0.55 0.31 -0.31
100 AT4G11270 Transducin/WD40 repeat-like superfamily protein -0.55 0.33 -0.32
101 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 0.54 0.33 -0.31
102 AT5G49500 Signal recognition particle, SRP54 subunit protein 0.53 0.3 -0.33
103 AT5G05760 syntaxin of plants 31 ATSED5, ATSYP31, T-SNARE SED 5,
syntaxin of plants 31		 0.53 0.32 -0.3
104 AT2G23960 Class I glutamine amidotransferase-like superfamily protein 0.53 0.32 -0.32
105 AT3G19400 Cysteine proteinases superfamily protein 0.5 0.3 -0.32
106 AT3G32040 Terpenoid synthases superfamily protein 0.5 0.31 -0.33
107 AT5G55130 co-factor for nitrate, reductase and xanthine dehydrogenase
5		 co-factor for nitrate, reductase
and xanthine dehydrogenase 5,
SIRTINOL RESISTANT 1		 0.49 0.33 -0.32
108 AT1G08310 alpha/beta-Hydrolases superfamily protein 0.48 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0173 MST_2301.7 - - - -0.8 0.42 -0.45
110 C0213 PR_MST_2410.2 - - - -0.74 0.46 -0.45
111 C0214 PR_MST_2412.1 - - - -0.67 0.46 -0.44
112 C0215 PR_MST_2527.1 - - - -0.66 0.44 -0.45
113 C0144 Maltose D-Maltose α-Maltose starch degradation II -0.65 0.45 -0.44 C0144
114 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		-0.61 0.47 -0.44 C0001
115 C0086 Disinapylspermidine - - - -0.6 0.45 -0.43