AT5G56140 : -
Query Information
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AGICode AT5G56140
Description RNA-binding KH domain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G56140 RNA-binding KH domain-containing protein 1 0.31 -0.33
2 AT5G48250 B-box type zinc finger protein with CCT domain 0.78 0.32 -0.31
3 AT2G28720 Histone superfamily protein 0.76 0.31 -0.32
4 AT4G13640 Homeodomain-like superfamily protein unfertilized embryo sac 16 0.75 0.31 -0.32
5 AT5G62880 RAC-like 10 RAC-like 10, ARABIDOPSIS THALIANA
RAC-LIKE 10, RHO-RELATED PROTEIN
FROM PLANTS 11, RAC-like 10,
RHO-related protein from plants 11		 0.74 0.35 -0.31
6 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A 0.72 0.31 -0.33
7 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.71 0.29 -0.3
8 AT2G02100 low-molecular-weight cysteine-rich 69 low-molecular-weight cysteine-rich
69, PDF2.2		 0.7 0.32 -0.33
9 AT2G45660 AGAMOUS-like 20 AGAMOUS-like 20, SUPPRESSOR OF
OVEREXPRESSION OF CO 1, SUPPRESSOR
OF OVEREXPRESSION OF CO 1		 0.7 0.33 -0.32
10 AT5G26600 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.7 0.32 -0.3
11 AT5G11150 vesicle-associated membrane protein 713 vesicle-associated membrane
protein 713, VAMP713,
vesicle-associated membrane
protein 713		 0.7 0.33 -0.29
12 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.7 0.31 -0.33
13 AT5G02840 LHY/CCA1-like 1 LHY/CCA1-like 1 0.69 0.3 -0.32
14 AT1G14685 basic pentacysteine 2 BASIC PENTACYSTEINE 2, BBR/BPC2,
basic pentacysteine 2		 0.69 0.29 -0.32
15 AT5G58600 Plant protein of unknown function (DUF828) POWDERY MILDEW RESISTANT 5,
TRICHOME BIREFRINGENCE-LIKE 44		 0.69 0.32 -0.32
16 AT3G45980 Histone superfamily protein HISTONE H2B, HTB9 0.69 0.32 -0.35
17 AT4G18710 Protein kinase superfamily protein SHAGGY-LIKE KINASE 21,
BRASSINOSTEROID-INSENSITIVE 2,
DWARF 12, SHAGGY-LIKE KINASE 21,
ULTRACURVATA 1		 0.68 0.31 -0.32
18 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 0.68 0.32 -0.31
19 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.68 0.31 -0.31
20 AT2G17230 EXORDIUM like 5 EXORDIUM like 5 0.68 0.3 -0.32
21 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.68 0.32 -0.3
22 AT3G06660 PAPA-1-like family protein / zinc finger (HIT type) family
protein		 0.67 0.32 -0.33
23 AT5G21040 F-box protein 2 F-box protein 2 0.67 0.32 -0.32
24 AT1G10060 branched-chain amino acid transaminase 1 branched-chain amino acid
transaminase 1, branched-chain
amino acid transaminase 1		 0.67 0.31 -0.34
25 AT5G63640 ENTH/VHS/GAT family protein 0.67 0.3 -0.31
26 AT5G18680 tubby like protein 11 tubby like protein 11, tubby like
protein 11		 0.67 0.32 -0.32
27 AT2G29700 pleckstrin homologue 1 pleckstrin homologue 1, pleckstrin
homologue 1		 0.66 0.31 -0.31
28 AT3G60520 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits
to 107 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.31 -0.3
29 AT2G21660 cold, circadian rhythm, and rna binding 2 GLYCINE RICH PROTEIN 7, cold,
circadian rhythm, and rna binding
2, GLYCINE-RICH RNA-BINDING
PROTEIN 7, GLYCINE-RICH
RNA-BINDING PROTEIN 7		 0.65 0.3 -0.33
30 AT5G09320 Vacuolar sorting protein 9 (VPS9) domain VPS9B 0.65 0.33 -0.32
31 AT5G41260 Protein kinase protein with tetratricopeptide repeat domain 0.65 0.31 -0.33
32 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.65 0.32 -0.31
33 AT1G67510 Leucine-rich repeat protein kinase family protein 0.65 0.32 -0.31
34 AT3G62690 AtL5 AtL5 0.64 0.31 -0.34
35 AT3G08620 RNA-binding KH domain-containing protein 0.64 0.32 -0.33
36 AT3G60250 casein kinase II beta chain 3 casein kinase II beta chain 3 0.64 0.32 -0.31
37 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 0.64 0.32 -0.3
38 AT1G72050 transcription factor IIIA transcription factor IIIA 0.64 0.33 -0.3
39 AT5G04330 Cytochrome P450 superfamily protein -0.64 0.3 -0.29
40 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 0.64 0.32 -0.32
41 AT5G18580 tonneau 2 (TON2) EMBRYO DEFECTIVE 40, FASS 1, FASS
2, FS1, GORDO, TONNEAU 2		 0.63 0.3 -0.32
42 AT3G01360 Family of unknown function (DUF716) -0.63 0.29 -0.33
43 AT3G03590 SWIB/MDM2 domain superfamily protein 0.63 0.32 -0.33
44 AT1G18700 DNAJ heat shock N-terminal domain-containing protein 0.63 0.31 -0.3
45 AT4G14300 RNA-binding (RRM/RBD/RNP motifs) family protein 0.63 0.31 -0.32
46 AT3G27320 alpha/beta-Hydrolases superfamily protein 0.63 0.33 -0.3
47 AT4G31140 O-Glycosyl hydrolases family 17 protein 0.63 0.3 -0.29
48 AT5G11530 embryonic flower 1 (EMF1) embryonic flower 1 0.63 0.3 -0.32
49 AT2G36010 E2F transcription factor 3 ATE2FA, E2F transcription factor 3 0.63 0.32 -0.31
50 AT1G05070 Protein of unknown function (DUF1068) 0.63 0.34 -0.33
51 AT5G62640 proline-rich family protein AtELF5, EARLY FLOWERING 5 0.63 0.32 -0.31
52 AT3G26640 Transducin/WD40 repeat-like superfamily protein LIGHT-REGULATED WD 2 0.62 0.3 -0.3
53 AT2G26390 Serine protease inhibitor (SERPIN) family protein -0.62 0.32 -0.32
54 AT5G45830 delay of germination 1 ATDOG1, DELAY OF GERMINATION 1,
GLUCOSE SENSING QTL 5		 0.62 0.34 -0.31
55 AT4G05150 Octicosapeptide/Phox/Bem1p family protein 0.62 0.33 -0.33
56 AT4G31360 selenium binding 0.61 0.31 -0.31
57 AT1G77850 auxin response factor 17 auxin response factor 17 0.61 0.33 -0.33
58 AT4G27750 binding IMPAIRED SUCROSE INDUCTION 1 0.61 0.32 -0.31
59 AT2G40650 PRP38 family protein 0.61 0.29 -0.32
60 AT5G06240 embryo defective 2735 embryo defective 2735 0.61 0.32 -0.31
61 AT5G19010 mitogen-activated protein kinase 16 mitogen-activated protein kinase
16		 0.61 0.32 -0.33
62 AT3G53030 ser/arg-rich protein kinase 4 ser/arg-rich protein kinase 4 0.61 0.34 -0.31
63 AT4G17150 alpha/beta-Hydrolases superfamily protein 0.6 0.31 -0.31
64 AT5G12260 BEST Arabidopsis thaliana protein match is:
glycosyltransferase family protein 2 (TAIR:AT5G60700.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.6 0.33 -0.31
65 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 0.6 0.32 -0.33
66 AT1G63530 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins
in 434 species: Archae - 1; Bacteria - 1259; Metazoa -
3608; Fungi - 2247; Plants - 291; Viruses - 90; Other
Eukaryotes - 2716 (source: NCBI BLink).		 -0.59 0.33 -0.32
67 AT4G05330 ARF-GAP domain 13 ARF-GAP domain 13 0.59 0.33 -0.32
68 AT5G45190 Cyclin family protein 0.59 0.32 -0.29
69 AT4G33900 Galactose oxidase/kelch repeat superfamily protein 0.59 0.31 -0.29
70 AT1G57600 MBOAT (membrane bound O-acyl transferase) family protein -0.59 0.32 -0.31
71 AT1G07130 Nucleic acid-binding, OB-fold-like protein ATSTN1, STN1 -0.59 0.34 -0.31
72 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.59 0.33 -0.31
73 AT4G29200 Beta-galactosidase related protein 0.59 0.3 -0.33
74 AT5G26230 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 membrane-associated kinase
regulator 1		 0.59 0.3 -0.31
75 AT1G28375 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: petal, leaf whorl,
sepal, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; Has 8 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.57 0.32 -0.33
76 AT1G77660 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.57 0.33 -0.33
77 AT5G56250 hapless 8 HAPLESS 8 -0.57 0.3 -0.3
78 AT3G42440 transposable element gene -0.57 0.31 -0.31
79 AT4G12400 stress-inducible protein, putative Hop3 -0.56 0.33 -0.3
80 AT4G20000 VQ motif-containing protein -0.56 0.31 -0.31
81 AT4G09130 RING/U-box superfamily protein -0.56 0.34 -0.3
82 AT2G42490 Copper amine oxidase family protein -0.56 0.33 -0.32
83 AT4G04490 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 cysteine-rich RLK (RECEPTOR-like
protein kinase) 36		 -0.55 0.31 -0.3
84 AT1G30300 Metallo-hydrolase/oxidoreductase superfamily protein -0.55 0.28 -0.3
85 AT2G17480 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 8,
MILDEW RESISTANCE LOCUS O 8		 -0.55 0.31 -0.3
86 AT5G23800 DOMAIN OF UNKNOWN FUNCTION 724 10 DOMAIN OF UNKNOWN FUNCTION 724 10,
DOMAIN OF UNKNOWN FUNCTION 724 10		 -0.55 0.33 -0.3
87 AT5G26980 syntaxin of plants 41 ATSYP41, ATTLG2A, syntaxin of
plants 41		 -0.54 0.32 -0.32
88 AT5G67090 Subtilisin-like serine endopeptidase family protein -0.54 0.3 -0.31
89 AT5G51650 unknown protein; Has 610 Blast hits to 233 proteins in 59
species: Archae - 0; Bacteria - 11; Metazoa - 230; Fungi -
26; Plants - 172; Viruses - 0; Other Eukaryotes - 171
(source: NCBI BLink).		 -0.53 0.32 -0.31
90 AT2G26020 plant defensin 1.2b plant defensin 1.2b -0.51 0.32 -0.31
91 AT1G21140 Vacuolar iron transporter (VIT) family protein -0.51 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.7 0.44 -0.42 C0131