AT5G56280 : COP9 signalosome subunit 6A
Query Information
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AGICode AT5G56280
Description COP9 signalosome subunit 6A
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G56280 COP9 signalosome subunit 6A COP9 signalosome subunit 6A 1 0.32 -0.31
2 AT1G27310 nuclear transport factor 2A nuclear transport factor 2A 0.89 0.32 -0.32
3 AT5G65430 general regulatory factor 8 14-3-3 PROTEIN G-BOX FACTOR14
KAPPA, GF14 KAPPA, general
regulatory factor 8		 0.88 0.31 -0.32
4 AT5G15350 early nodulin-like protein 17 AtENODL17, early nodulin-like
protein 17		 0.86 0.3 -0.33
5 AT2G30060 Pleckstrin homology (PH) domain superfamily protein 0.85 0.3 -0.3
6 AT5G15770 glucose-6-phosphate acetyltransferase 1 glucose-6-phosphate
acetyltransferase 1,
glucose-6-phosphate
acetyltransferase 1		 0.8 0.29 -0.3
7 AT1G53530 Peptidase S24/S26A/S26B/S26C family protein 0.8 0.32 -0.32
8 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.79 0.31 -0.32
9 AT1G43710 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 embryo defective 1075 0.79 0.31 -0.35
10 AT5G05440 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1-LIKE 5,
regulatory component of ABA
receptor 8		 0.79 0.32 -0.29
11 AT4G18460 D-Tyr-tRNA(Tyr) deacylase family protein 0.78 0.31 -0.3
12 AT3G07950 rhomboid protein-related 0.78 0.34 -0.32
13 AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase 0.78 0.31 -0.31
14 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 0.77 0.33 -0.31
15 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.77 0.33 -0.3
16 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP 0.76 0.31 -0.31
17 AT1G03870 FASCICLIN-like arabinoogalactan 9 FASCICLIN-like arabinoogalactan 9 0.76 0.31 -0.32
18 AT4G15700 Thioredoxin superfamily protein 0.76 0.31 -0.32
19 AT2G43500 Plant regulator RWP-RK family protein -0.76 0.3 -0.33
20 AT3G05150 Major facilitator superfamily protein 0.76 0.3 -0.33
21 AT1G05430 unknown protein; Has 31 Blast hits to 31 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.76 0.32 -0.3
22 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.76 0.32 -0.31
23 AT1G51540 Galactose oxidase/kelch repeat superfamily protein 0.75 0.33 -0.34
24 AT4G14000 Putative methyltransferase family protein 0.75 0.33 -0.32
25 AT2G38310 PYR1-like 4 PYR1-like 4, regulatory components
of ABA receptor 10		 0.75 0.3 -0.32
26 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.31 -0.3
27 AT2G19760 profilin 1 PROFILIN 1, profilin 1 0.75 0.32 -0.32
28 AT1G05810 RAB GTPase homolog A5E ARA, ARA-1, ATRAB11D, ARABIDOPSIS
THALIANA RAB GTPASE HOMOLOG A5E,
RAB GTPase homolog A5E		 0.75 0.33 -0.31
29 AT5G20250 Raffinose synthase family protein DARK INDUCIBLE 10, raffinose
synthase 6		 0.75 0.3 -0.33
30 AT1G30120 pyruvate dehydrogenase E1 beta pyruvate dehydrogenase E1 beta 0.75 0.32 -0.29
31 AT5G46790 PYR1-like 1 PYR1-like 1, regulatory components
of ABA receptor 12		 0.75 0.32 -0.32
32 AT2G18440 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15); other RNA GENE WITH UNSTABLE TRANSCRIPT 15 -0.74 0.29 -0.33
33 AT3G25040 endoplasmic reticulum retention defective 2B endoplasmic reticulum retention
defective 2B		 0.74 0.31 -0.31
34 AT2G30050 transducin family protein / WD-40 repeat family protein 0.74 0.31 -0.34
35 AT1G13320 protein phosphatase 2A subunit A3 protein phosphatase 2A subunit A3 0.74 0.31 -0.32
36 AT1G11680 CYTOCHROME P450 51G1 CYTOCHROME P450 51, CYTOCHROME
P450 51A2, CYTOCHROME P450 51G1,
embryo defective 1738		 0.74 0.31 -0.33
37 AT2G26680 CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM
(InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins
in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0;
Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451
(source: NCBI BLink).		 0.74 0.32 -0.31
38 AT5G22370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 EMBRYO DEFECTIVE 1705,
QUATRE-QUART 1		 0.74 0.32 -0.32
39 AT2G47580 spliceosomal protein U1A spliceosomal protein U1A 0.74 0.31 -0.31
40 AT1G22790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast
hits to 67 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.74 0.32 -0.31
41 AT1G10630 ADP-ribosylation factor A1F ADP-ribosylation factor A1F,
ADP-ribosylation factor A1F		 0.74 0.33 -0.3
42 AT5G16470 zinc finger (C2H2 type) family protein 0.74 0.33 -0.31
43 AT5G62490 HVA22 homologue B ARABIDOPSIS THALIANA HVA22
HOMOLOGUE B, HVA22 homologue B		 -0.73 0.31 -0.33
44 AT2G01580 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G07510.2); Has 129 Blast hits
to 129 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.3 -0.32
45 AT4G15690 Thioredoxin superfamily protein 0.73 0.32 -0.33
46 AT2G47320 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.73 0.28 -0.3
47 AT3G14850 TRICHOME BIREFRINGENCE-LIKE 41 TRICHOME BIREFRINGENCE-LIKE 41 0.73 0.3 -0.33
48 AT4G34770 SAUR-like auxin-responsive protein family 0.73 0.31 -0.32
49 AT4G15660 Thioredoxin superfamily protein 0.73 0.33 -0.31
50 AT1G16870 mitochondrial 28S ribosomal protein S29-related 0.73 0.32 -0.3
51 AT5G19760 Mitochondrial substrate carrier family protein 0.73 0.31 -0.34
52 AT1G18640 3-phosphoserine phosphatase 3-phosphoserine phosphatase 0.73 0.32 -0.31
53 AT1G74910 ADP-glucose pyrophosphorylase family protein 0.73 0.33 -0.31
54 AT5G59910 Histone superfamily protein HTB4 0.73 0.3 -0.34
55 AT4G21870 HSP20-like chaperones superfamily protein 0.73 0.32 -0.33
56 AT3G49910 Translation protein SH3-like family protein 0.72 0.3 -0.33
57 AT2G20140 AAA-type ATPase family protein regulatory particle AAA-ATPase 2b 0.72 0.3 -0.34
58 AT4G17870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1,
regulatory component of ABA
receptor 11		 0.72 0.33 -0.31
59 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 0.72 0.32 -0.31
60 AT1G04690 potassium channel beta subunit 1 potassium channel beta subunit 1,
KV-BETA1		 0.72 0.3 -0.31
61 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 0.72 0.32 -0.33
62 AT1G32460 unknown protein; Has 19 Blast hits to 19 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.31 -0.3
63 AT4G10310 high-affinity K+ transporter 1 ATHKT1, high-affinity K+
transporter 1		 0.71 0.3 -0.3
64 AT4G14965 membrane-associated progesterone binding protein 4 membrane-associated progesterone
binding protein 4,
membrane-associated progesterone
binding protein 4		 0.71 0.3 -0.31
65 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5		 0.71 0.3 -0.31
66 AT1G72430 SAUR-like auxin-responsive protein family 0.71 0.31 -0.31
67 AT2G29560 cytosolic enolase cytosolic enolase 0.71 0.31 -0.31
68 AT1G02140 mago nashi family protein HAPLESS 1, MAGO NASHI, MATERNAL
EFFECT EMBRYO ARREST 63		 0.71 0.31 -0.32
69 AT5G53530 vacuolar protein sorting 26A vacuolar protein sorting 26A 0.71 0.31 -0.3
70 AT1G75960 AMP-dependent synthetase and ligase family protein 0.71 0.32 -0.32
71 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.71 0.32 -0.32
72 AT4G14760 kinase interacting (KIP1-like) family protein -0.71 0.31 -0.3
73 AT3G50380 Protein of unknown function (DUF1162) -0.7 0.32 -0.29
74 AT2G26600 Glycosyl hydrolase superfamily protein -0.7 0.34 -0.32
75 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.35 -0.34
76 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 0.7 0.32 -0.34
77 AT2G30105 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical
subtype (InterPro:IPR003591), Leucine-rich repeat
(InterPro:IPR001611), Ubiquitin (InterPro:IPR000626),
Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis
thaliana protein match is: Leucine-rich repeat (LRR) family
protein (TAIR:AT5G07910.1).		 0.7 0.3 -0.33
78 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.7 0.32 -0.32
79 AT4G25260 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.7 0.32 -0.33
80 AT3G07630 arogenate dehydratase 2 arogenate dehydratase 2,
Arabidopsis thaliana arogenate
dehydratase 2		 0.7 0.31 -0.31
81 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.34 -0.33
82 AT4G15680 Thioredoxin superfamily protein 0.7 0.32 -0.33
83 AT4G17190 farnesyl diphosphate synthase 2 farnesyl diphosphate synthase 2 0.7 0.32 -0.3
84 AT4G16143 importin alpha isoform 2 importin alpha isoform 2 0.7 0.31 -0.32
85 AT2G46225 ABI-1-like 1 ABI-1-like 1 0.7 0.3 -0.31
86 AT4G13720 Inosine triphosphate pyrophosphatase family protein 0.7 0.29 -0.32
87 AT3G46030 Histone superfamily protein HTB11 0.7 0.31 -0.31
88 AT1G54060 6B-interacting protein 1-like 1 6B-interacting protein 1-like 1 0.69 0.3 -0.32
89 AT3G05030 sodium hydrogen exchanger 2 ATNHX2, sodium hydrogen exchanger
2		 -0.69 0.3 -0.32
90 AT1G77800 PHD finger family protein -0.69 0.33 -0.3
91 AT4G30480 Tetratricopeptide repeat (TPR)-like superfamily protein AtTPR1, tetratricopeptide repeat 1 0.69 0.33 -0.31
92 AT5G23210 serine carboxypeptidase-like 34 serine carboxypeptidase-like 34 0.69 0.31 -0.3
93 AT1G10230 SKP1-like 18 SKP1-like 18, SKP1-like 18 0.69 0.34 -0.3
94 AT5G55940 Uncharacterised protein family (UPF0172) embryo defective 2731 0.69 0.31 -0.32
95 AT3G02580 sterol 1 BOULE 1, DWARF 7, sterol 1 0.69 0.31 -0.33
96 AT4G35410 Clathrin adaptor complex small chain family protein 0.69 0.31 -0.33
97 AT5G05610 alfin-like 1 alfin-like 1 0.69 0.28 -0.31
98 AT5G61590 Integrase-type DNA-binding superfamily protein 0.69 0.3 -0.32
99 AT5G11280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.69 0.32 -0.32
100 AT3G14720 MAP kinase 19 ARABIDOPSIS THALIANA MAP KINASE
19, MAP kinase 19		 -0.69 0.29 -0.3
101 AT4G29870 Oligosaccharyltransferase complex/magnesium transporter
family protein		 0.69 0.32 -0.33
102 AT5G18830 squamosa promoter binding protein-like 7 SQUAMOSA PROMOTER BINDING
PROTEIN-LIKE 7, squamosa promoter
binding protein-like 7		 -0.69 0.34 -0.32
103 AT4G32690 hemoglobin 3 ARABIDOPSIS HEMOGLOBIN 3,
hemoglobin 3		 0.69 0.31 -0.33
104 AT4G35300 tonoplast monosaccharide transporter2 tonoplast monosaccharide
transporter2		 -0.68 0.3 -0.32
105 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 -0.68 0.33 -0.32
106 AT1G79270 evolutionarily conserved C-terminal region 8 evolutionarily conserved
C-terminal region 8		 -0.67 0.33 -0.32
107 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.67 0.33 -0.31
108 AT5G20840 Phosphoinositide phosphatase family protein -0.66 0.33 -0.31
109 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 -0.66 0.31 -0.32
110 AT5G62090 SEUSS-like 2 SEUSS-like 2 -0.66 0.32 -0.3
111 AT2G29190 pumilio 2 pumilio 2, pumilio 2 -0.66 0.29 -0.3
112 AT5G37500 gated outwardly-rectifying K+ channel gated outwardly-rectifying K+
channel		 -0.66 0.34 -0.28
113 AT5G11700 LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.31 -0.32
114 AT5G52300 CAP160 protein LOW-TEMPERATURE-INDUCED 65,
RESPONSIVE TO DESSICATION 29B		 -0.66 0.31 -0.31
115 AT1G16850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to salt stress; LOCATED IN:
endomembrane system; EXPRESSED IN: leaf apex, leaf whorl,
male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six
leaves visible, LP.04 four leaves visible, LP.10 ten leaves
visible, petal differentiation and expansion stage, LP.08
eight leaves visible; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast
hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.3 -0.32
116 AT5G58700 phosphatidylinositol-speciwc phospholipase C4 ATPLC4,
phosphatidylinositol-speciwc
phospholipase C4		 -0.65 0.31 -0.29
117 AT4G32620 Enhancer of polycomb-like transcription factor protein -0.65 0.31 -0.33
118 AT1G49450 Transducin/WD40 repeat-like superfamily protein -0.65 0.32 -0.32
119 AT2G38905 Low temperature and salt responsive protein family -0.65 0.32 -0.3
120 AT3G19960 myosin 1 myosin 1 -0.65 0.33 -0.32
121 AT3G42460 transposable element gene -0.64 0.3 -0.32
122 AT1G27920 microtubule-associated protein 65-8 microtubule-associated protein
65-8		 -0.64 0.32 -0.31
123 AT5G40340 Tudor/PWWP/MBT superfamily protein -0.64 0.31 -0.32
124 AT1G63280 Serine protease inhibitor (SERPIN) family protein -0.64 0.31 -0.31
125 AT1G79950 RAD3-like DNA-binding helicase protein -0.64 0.31 -0.29
126 AT1G20450 Dehydrin family protein EARLY RESPONSIVE TO DEHYDRATION
10, LOW TEMPERATURE INDUCED 29,
LOW TEMPERATURE INDUCED 45		 -0.64 0.34 -0.32
127 AT3G07274 unknown pseudogene -0.64 0.31 -0.31
128 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.64 0.34 -0.31
129 AT1G60190 ARM repeat superfamily protein AtPUB19, plant U-box 19 -0.64 0.32 -0.31
130 AT5G44670 Domain of unknown function (DUF23) -0.64 0.32 -0.29
131 AT1G53100 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.64 0.32 -0.31
132 AT5G56790 Protein kinase superfamily protein -0.64 0.31 -0.32
133 AT5G47020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.64 0.32 -0.31
134 AT1G48090 calcium-dependent lipid-binding family protein -0.64 0.33 -0.32
135 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein -0.64 0.34 -0.32
136 AT2G43800 Actin-binding FH2 (formin homology 2) family protein -0.64 0.33 -0.32
137 AT5G64390 RNA-binding KH domain-containing protein HUA ENHANCER 4 -0.63 0.32 -0.32
138 AT5G01880 RING/U-box superfamily protein -0.63 0.34 -0.3
139 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.63 0.33 -0.3
140 AT2G28550 related to AP2.7 related to AP2.7, TARGET OF EARLY
ACTIVATION TAGGED (EAT) 1		 -0.62 0.31 -0.32
141 AT1G23200 Plant invertase/pectin methylesterase inhibitor superfamily -0.62 0.31 -0.32
142 AT1G62710 beta vacuolar processing enzyme beta vacuolar processing enzyme,
BETAVPE		 -0.62 0.33 -0.32
143 AT1G12720 transposable element gene -0.62 0.3 -0.31
144 AT5G18550 Zinc finger C-x8-C-x5-C-x3-H type family protein -0.62 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0017 sn-Glycero-3-phosphocholine sn-Glycero-3-phosphocholine L-1-Glycero-3-phosphocholine - -0.79 0.44 -0.46 C0017
146 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.75 0.46 -0.45 C0225
147 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate 0.73 0.47 -0.47 C0136