AT5G55670 : -
Query Information
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AGICode AT5G55670
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G55670 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.31 -0.31
2 AT2G40070 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.74 0.31 -0.31
3 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 0.72 0.31 -0.32
4 AT3G54280 DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA binding;helicases		 ATBTAF1, BTAF1, CHA16, CHR16, ROOT
GROWTH DEFECTIVE 3		 0.71 0.31 -0.34
5 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha 0.71 0.31 -0.32
6 AT2G05920 Subtilase family protein 0.69 0.32 -0.31
7 AT1G26760 SET domain protein 35 ATXR1, SET domain protein 35 0.69 0.32 -0.3
8 AT1G22510 RING/U-box protein with domain of unknown function (DUF
1232)		 -0.69 0.3 -0.31
9 AT5G13000 glucan synthase-like 12 glucan synthase-like 12, callose
synthase 3, gsl12, glucan
synthase-like 12		 0.67 0.31 -0.32
10 AT4G14510 CRM family member 3B ATCFM3B, CRM family member 3B 0.67 0.32 -0.32
11 AT4G21450 PapD-like superfamily protein -0.67 0.31 -0.31
12 AT2G45540 WD-40 repeat family protein / beige-related 0.66 0.33 -0.29
13 AT2G35630 ARM repeat superfamily protein GEM1, MICROTUBULE ORGANIZATION 1 0.66 0.32 -0.31
14 AT1G63640 P-loop nucleoside triphosphate hydrolases superfamily
protein with CH (Calponin Homology) domain		 0.66 0.33 -0.29
15 AT5G03320 Protein kinase superfamily protein -0.65 0.3 -0.3
16 AT1G73380 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1308 (InterPro:IPR010733); Has 162
Blast hits to 160 proteins in 67 species: Archae - 0;
Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).		 -0.65 0.34 -0.32
17 AT1G15880 golgi snare 11 atgos11, golgi snare 11 -0.65 0.31 -0.32
18 AT1G31810 Formin Homology 14 Formin Homology 14 0.65 0.31 -0.33
19 AT3G28480 Oxoglutarate/iron-dependent oxygenase -0.64 0.32 -0.33
20 AT1G27880 DEAD/DEAH box RNA helicase family protein 0.64 0.31 -0.3
21 AT5G67100 DNA-directed DNA polymerases INCURVATA2 0.63 0.3 -0.31
22 AT5G51510 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1352 (InterPro:IPR009787); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.63 0.31 -0.29
23 AT2G15270 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1168 (InterPro:IPR009548); Has 1930
Blast hits to 1364 proteins in 219 species: Archae - 0;
Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96;
Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).		 -0.63 0.32 -0.3
24 AT1G64790 ILITYHIA ILITYHIA 0.63 0.32 -0.3
25 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.63 0.3 -0.32
26 AT2G44525 Protein of unknown function (DUF498/DUF598) -0.62 0.32 -0.32
27 AT4G00760 pseudo-response regulator 8 pseudo-response regulator 8,
PSEUDO-RESPONSE REGULATOR 8		 0.62 0.31 -0.32
28 AT3G02780 isopentenyl pyrophosphate:dimethylallyl pyrophosphate
isomerase 2		 ATISOPENTENYL DIPHOSPHE ISOMERASE
2, IPIAT1, isopentenyl
pyrophosphate:dimethylallyl
pyrophosphate isomerase 2		 -0.62 0.34 -0.31
29 AT2G10010 transposable element gene 0.62 0.32 -0.32
30 AT3G06240 F-box family protein -0.61 0.32 -0.32
31 AT3G51150 ATP binding microtubule motor family protein 0.61 0.32 -0.32
32 AT3G44050 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.61 0.3 -0.32
33 AT5G65930 kinesin-like calmodulin-binding protein (ZWICHEL) KINESIN-LIKE CALMODULIN-BINDING
PROTEIN, POTATO KINESIN-LIKE
CALMODULIN-BINDING PROTEIN,
ZWICHEL		 0.61 0.31 -0.29
34 AT4G02730 Transducin/WD40 repeat-like superfamily protein AtWDR5b, human WDR5 (WD40 repeat)
homolog b		 -0.61 0.32 -0.31
35 AT5G47890 NADH-ubiquinone oxidoreductase B8 subunit, putative -0.61 0.31 -0.34
36 AT3G43500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G42080.1); Has 8 Blast hits to
8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.33 -0.31
37 AT2G21240 basic pentacysteine 4 BASIC PENTACYSTEINE 4, BBR, basic
pentacysteine 4		 -0.6 0.31 -0.3
38 AT5G22750 DNA/RNA helicase protein RAD5, RAD5A 0.6 0.33 -0.32
39 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 0.6 0.33 -0.3
40 AT3G52170 DNA binding 0.59 0.31 -0.3
41 AT1G55200 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.59 0.33 -0.3
42 AT4G15890 binding 0.59 0.32 -0.32
43 AT3G13840 GRAS family transcription factor 0.59 0.31 -0.29
44 AT1G55550 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.59 0.31 -0.34
45 AT2G25660 embryo defective 2410 embryo defective 2410 0.59 0.31 -0.31
46 AT5G27970 ARM repeat superfamily protein 0.59 0.32 -0.32
47 AT4G17330 G2484-1 protein G2484-1 protein, G2484-1 protein 0.58 0.32 -0.3
48 AT3G56820 unknown protein; Has 34 Blast hits to 34 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.58 0.32 -0.32
49 AT1G16240 syntaxin of plants 51 ATSYP51, syntaxin of plants 51 -0.58 0.3 -0.33
50 AT4G18465 RNA helicase family protein -0.57 0.3 -0.32
51 AT3G47800 Galactose mutarotase-like superfamily protein -0.57 0.31 -0.3
52 AT4G12040 A20/AN1-like zinc finger family protein AtSAP7, stress-associated protein
7		 -0.57 0.32 -0.3
53 AT2G04550 indole-3-butyric acid response 5 DUAL SPECIFICITY PROTEIN
PHOSPHATASE 1E, indole-3-butyric
acid response 5		 -0.57 0.29 -0.32
54 AT3G54130 Josephin family protein -0.57 0.32 -0.33
55 AT5G51200 Protein of unknown function (DUF3414) EMBRYO DEFECTIVE 3142 0.57 0.3 -0.32
56 AT4G38120 ARM repeat superfamily protein 0.57 0.31 -0.31
57 AT1G67140 HEAT repeat-containing protein SWEETIE 0.56 0.32 -0.29
58 AT1G32330 heat shock transcription factor A1D heat shock transcription factor
A1D, heat shock transcription
factor A1D		 0.56 0.3 -0.32
59 AT4G36780 BES1/BZR1 homolog 2 BES1/BZR1 homolog 2 -0.55 0.33 -0.28
60 AT1G50200 Alanyl-tRNA synthetase ACD, Alanyl-tRNA synthetase 0.55 0.32 -0.32
61 AT5G44750 DNA-directed DNA polymerases ARABIDOPSIS THALIANA HOMOLOG OF
REVERSIONLESS 1, REV1		 0.55 0.3 -0.32
62 AT1G68420 Class II aaRS and biotin synthetases superfamily protein 0.55 0.32 -0.33
63 AT3G43920 dicer-like 3 DICER-LIKE 3, dicer-like 3 0.55 0.31 -0.32
64 AT3G30440 transposable element gene -0.54 0.29 -0.29
65 AT5G23640 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.54 0.33 -0.31
66 AT3G47590 alpha/beta-Hydrolases superfamily protein -0.53 0.33 -0.31
67 AT2G36090 F-box family protein -0.53 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
68 C0212 PR_MST_2336.8 - - - 0.56 0.43 -0.46
69 C0068 Citric acid - Citrate acetyl-CoA biosynthesis (from citrate),
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.54 0.34 -0.32 C0068