AT5G55480 : Glycerophosphodiester phosphodiesterase (GDPD.....

AT5G55480 : Glycerophosphodiester phosphodiesterase (GDPD) like 4.....

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AGICode	AT5G55480
Description	SHV3-like 1

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT5G55480	SHV3-like 1	Glycerophosphodiester phosphodiesterase (GDPD) like 4, glycerophosphodiesterase-like 1, SHV3-like 1	1	0.32	-0.29
2	AT5G56180	actin-related protein 8	ARP8, actin-related protein 8, actin-related protein 8	-0.85	0.31	-0.31
3	AT5G22270	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.84	0.32	-0.32
4	AT1G53280	Class I glutamine amidotransferase-like superfamily protein	DJ-1 homolog B, DJ-1 homolog B	-0.83	0.32	-0.31
5	AT3G48690	alpha/beta-Hydrolases superfamily protein	ARABIDOPSIS THALIANA CARBOXYESTERASE 12, CXE12	-0.83	0.32	-0.33
6	AT3G51000	alpha/beta-Hydrolases superfamily protein		-0.81	0.3	-0.31
7	AT3G01200	PPDK regulatory protein 2	PPDK regulatory protein 2, PPDK regulatory protein 2	-0.81	0.29	-0.34
8	AT2G14890	arabinogalactan protein 9	arabinogalactan protein 9	0.8	0.34	-0.34
9	AT3G05900	neurofilament protein-related		0.8	0.34	-0.33
10	AT1G21880	lysm domain GPI-anchored protein 1 precursor	lysm domain GPI-anchored protein 1 precursor	0.79	0.31	-0.33
11	AT5G49650	xylulose kinase-2	xylulose kinase-2, XYLULOSE KINASE 2	-0.79	0.31	-0.29
12	AT5G49460	ATP citrate lyase subunit B 2	ATP citrate lyase subunit B 2	0.79	0.33	-0.31
13	AT3G51430	Calcium-dependent phosphotriesterase superfamily protein	STRICTOSIDINE SYNTHASE-LIKE 5, YELLOW-LEAF-SPECIFIC GENE 2	-0.79	0.31	-0.31
14	AT5G60360	aleurain-like protease	aleurain-like protease, aleurain-like protease, SENESCENCE ASSOCIATED GENE2	-0.78	0.29	-0.32
15	AT4G29820	homolog of CFIM-25	ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25	-0.78	0.33	-0.3
16	AT4G00740	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	QUASIMODO 3	0.78	0.32	-0.32
17	AT3G19990	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).		-0.77	0.31	-0.3
18	AT5G24160	squalene monoxygenase 6	squalene monoxygenase 6	-0.77	0.33	-0.31
19	AT2G04780	FASCICLIN-like arabinoogalactan 7	FASCICLIN-like arabinoogalactan 7	0.77	0.33	-0.32
20	AT1G21000	PLATZ transcription factor family protein		-0.76	0.3	-0.31
21	AT5G07590	Transducin/WD40 repeat-like superfamily protein		0.76	0.32	-0.3
22	AT1G20220	Alba DNA/RNA-binding protein		0.76	0.28	-0.32
23	AT2G45470	FASCICLIN-like arabinogalactan protein 8	ARABINOGALACTAN PROTEIN 8, FASCICLIN-like arabinogalactan protein 8	0.76	0.32	-0.3
24	AT3G44880	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	ACCELERATED CELL DEATH 1, LETHAL LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE A OXYGENASE	-0.76	0.31	-0.31
25	AT1G10030	homolog of yeast ergosterol28	homolog of yeast ergosterol28	0.76	0.31	-0.32
26	AT2G43510	trypsin inhibitor protein 1	trypsin inhibitor protein 1, trypsin inhibitor protein 1	-0.76	0.33	-0.31
27	AT5G10020	Leucine-rich receptor-like protein kinase family protein		0.76	0.31	-0.3
28	AT1G01800	NAD(P)-binding Rossmann-fold superfamily protein		-0.76	0.33	-0.31
29	AT1G18720	Protein of unknown function (DUF962)		-0.76	0.3	-0.33
30	AT3G46110	Domain of unknown function (DUF966)		-0.76	0.34	-0.32
31	AT3G13570	SC35-like splicing factor 30A	SC35-like splicing factor 30A, SC35-like splicing factor 30A	0.75	0.32	-0.34
32	AT3G18190	TCP-1/cpn60 chaperonin family protein		0.75	0.3	-0.31
33	AT3G02530	TCP-1/cpn60 chaperonin family protein		0.75	0.31	-0.32
34	AT5G08380	alpha-galactosidase 1	alpha-galactosidase 1, alpha-galactosidase 1	-0.75	0.33	-0.32
35	AT2G25950	Protein of unknown function (DUF1000)		-0.75	0.29	-0.31
36	AT1G17830	Protein of unknown function (DUF789)		-0.75	0.32	-0.32
37	AT1G31820	Amino acid permease family protein		-0.75	0.3	-0.31
38	AT2G31270	homolog of yeast CDT1 A	ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, ARABIDOPSIS HOMOLOG OF YEAST CDT1, homolog of yeast CDT1 A	0.75	0.3	-0.32
39	AT3G21750	UDP-glucosyl transferase 71B1	UDP-glucosyl transferase 71B1	-0.75	0.33	-0.33
40	AT1G02305	Cysteine proteinases superfamily protein		-0.74	0.29	-0.31
41	AT3G07320	O-Glycosyl hydrolases family 17 protein		0.74	0.34	-0.32
42	AT1G48320	Thioesterase superfamily protein		-0.74	0.3	-0.32
43	AT1G73040	Mannose-binding lectin superfamily protein		-0.74	0.31	-0.31
44	AT1G30260	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.74	0.32	-0.32
45	AT1G03030	P-loop containing nucleoside triphosphate hydrolases superfamily protein		-0.74	0.32	-0.34
46	AT5G41060	DHHC-type zinc finger family protein		0.74	0.29	-0.31
47	AT5G10240	asparagine synthetase 3	asparagine synthetase 3	0.73	0.31	-0.31
48	AT5G42850	Thioredoxin superfamily protein		-0.73	0.3	-0.31
49	AT2G04280	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).		0.73	0.29	-0.33
50	AT4G29010	Enoyl-CoA hydratase/isomerase family	ABNORMAL INFLORESCENCE MERISTEM	-0.73	0.34	-0.34
51	AT1G13730	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain		0.73	0.32	-0.31
52	AT3G07870	F-box and associated interaction domains-containing protein		-0.73	0.31	-0.3
53	AT3G45770	Polyketide synthase, enoylreductase family protein		-0.72	0.32	-0.34
54	AT4G35220	Cyclase family protein		-0.72	0.32	-0.33
55	AT2G32520	alpha/beta-Hydrolases superfamily protein		-0.72	0.32	-0.35
56	AT4G38460	geranylgeranyl reductase	geranylgeranyl reductase	-0.72	0.34	-0.31
57	AT3G23600	alpha/beta-Hydrolases superfamily protein		-0.72	0.31	-0.33
58	AT4G31360	selenium binding		0.72	0.3	-0.32
59	AT5G45350	proline-rich family protein		-0.72	0.32	-0.3
60	AT5G24870	RING/U-box superfamily protein		-0.72	0.32	-0.3
61	AT1G77710	CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).		-0.72	0.32	-0.29
62	AT5G04080	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.72	0.3	-0.32
63	AT1G08460	histone deacetylase 8	ATHDA8, histone deacetylase 8, HISTONE DEACETYLASE 8	-0.72	0.32	-0.31
64	AT3G63120	cyclin p1;1	cyclin p1;1	0.72	0.31	-0.31
65	AT2G46780	RNA-binding (RRM/RBD/RNP motifs) family protein		0.71	0.32	-0.29
66	AT2G43540	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.71	0.31	-0.27
67	AT2G13820	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein	AtXYP2, xylogen protein 2	0.71	0.29	-0.29
68	AT4G14020	Rapid alkalinization factor (RALF) family protein		-0.71	0.34	-0.33
69	AT1G12200	Flavin-binding monooxygenase family protein	flavin monooxygenase	-0.71	0.32	-0.3
70	AT3G48170	aldehyde dehydrogenase 10A9	aldehyde dehydrogenase 10A9	-0.71	0.31	-0.3
71	AT5G53550	YELLOW STRIPE like 3	YELLOW STRIPE LIKE 3, YELLOW STRIPE like 3	-0.71	0.32	-0.31
72	AT4G16330	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		-0.7	0.3	-0.32
73	AT5G12040	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein		-0.7	0.33	-0.32
74	AT5G06930	LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in 313 species: Archae - 2; Bacteria - 910; Metazoa - 754; Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes - 1219 (source: NCBI BLink).		0.7	0.32	-0.32
75	AT2G42740	ribosomal protein large subunit 16A	ribosomal protein large subunit 16A	0.7	0.32	-0.31
76	AT2G17560	high mobility group B4	high mobility group B4, NFD04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4	0.7	0.28	-0.34
77	AT2G11910	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to 31060 proteins in 1576 species: Archae - 765; Bacteria - 32670; Metazoa - 21164; Fungi - 12252; Plants - 4238; Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI BLink).		0.7	0.29	-0.32
78	AT2G46610	RNA-binding (RRM/RBD/RNP motifs) family protein	arginine/serine-rich splicing factor 31a, arginine/serine-rich splicing factor 31a	-0.7	0.32	-0.31
79	AT3G54360	zinc ion binding		-0.7	0.31	-0.32
80	AT3G16230	Predicted eukaryotic LigT		-0.69	0.29	-0.31
81	AT5G63080	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein		-0.69	0.32	-0.31
82	AT4G15840	BTB/POZ domain-containing protein		-0.69	0.33	-0.33
83	AT3G27820	monodehydroascorbate reductase 4	MONODEHYDROASCORBATE REDUCTASE 4, monodehydroascorbate reductase 4	-0.69	0.3	-0.31
84	AT3G52880	monodehydroascorbate reductase 1	monodehydroascorbate reductase 1, monodehydroascorbate reductase 1	-0.69	0.33	-0.3
85	AT3G09390	metallothionein 2A	ARABIDOPSIS THALIANA METALLOTHIONEIN-1, ARABIDOPSIS THALIANA METALLOTHIONEIN-K, metallothionein 2A	-0.69	0.33	-0.33
86	AT2G31800	Integrin-linked protein kinase family		-0.69	0.34	-0.31
87	AT1G07790	Histone superfamily protein	HTB1	0.69	0.32	-0.32
88	AT1G27530	CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).		-0.69	0.31	-0.3
89	AT1G64530	Plant regulator RWP-RK family protein		0.69	0.3	-0.33
90	AT3G23740	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).		0.68	0.32	-0.33
91	AT2G43530	Scorpion toxin-like knottin superfamily protein		-0.68	0.32	-0.34
92	AT4G24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	Arabidopsis thaliana next to BRCA1 gene 1, next to BRCA1 gene 1	-0.68	0.31	-0.31
93	AT1G15310	signal recognition particle 54 kDa subunit	signal recognition particle 54 kDa subunit, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT	-0.68	0.32	-0.32
94	AT3G50360	centrin2	centrin2, CENTRIN 1, centrin2	-0.68	0.31	-0.34
95	AT4G16970	Protein kinase superfamily protein		0.68	0.31	-0.32
96	AT5G48820	inhibitor/interactor with cyclin-dependent kinase	inhibitor/interactor with cyclin-dependent kinase, KIP-RELATED PROTEIN 3	0.68	0.31	-0.32
97	AT1G05060	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.67	0.32	-0.31
98	AT3G55005	tonneau 1b (TON1b)	tonneau 1b	0.67	0.33	-0.3
99	AT1G49230	RING/U-box superfamily protein		0.67	0.34	-0.29
100	AT5G25460	Protein of unknown function, DUF642		0.67	0.32	-0.32
101	AT1G04240	AUX/IAA transcriptional regulator family protein	indole-3-acetic acid inducible 3, SHORT HYPOCOTYL 2	0.67	0.36	-0.32
102	AT4G13360	ATP-dependent caseinolytic (Clp) protease/crotonase family protein		-0.67	0.34	-0.32
103	AT4G26300	Arginyl-tRNA synthetase, class Ic	embryo defective 1027	0.67	0.32	-0.35
104	AT5G03455	Rhodanese/Cell cycle control phosphatase superfamily protein	ARSENATE REDUCTASE 2, ARATH;CDC25, CDC25	-0.67	0.31	-0.32
105	AT3G62960	Thioredoxin superfamily protein		0.67	0.31	-0.33
106	AT5G58490	NAD(P)-binding Rossmann-fold superfamily protein		-0.67	0.33	-0.34
107	AT1G29440	SAUR-like auxin-responsive protein family		0.67	0.32	-0.31
108	AT2G16940	Splicing factor, CC1-like		0.67	0.3	-0.3
109	AT5G64200	ortholog of human splicing factor SC35	ortholog of human splicing factor SC35, ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35	0.66	0.31	-0.32
110	AT2G41770	Protein of unknown function (DUF288)		0.66	0.33	-0.3
111	AT5G36910	thionin 2.2	thionin 2.2	0.66	0.32	-0.31
112	AT1G80280	alpha/beta-Hydrolases superfamily protein		0.66	0.32	-0.31
113	AT2G05760	Xanthine/uracil permease family protein		0.66	0.31	-0.32

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
114	C0050	8-Methylthio-n-octylglucosinolate	-	8-Methylthiooctyl glucosinolate	glucosinolate biosynthesis from hexahomomethionine	0.89	0.47	-0.45
115	C0125	isorhamnetin-3-O-glucoside	-	-	-	0.79	0.44	-0.45
116	C0118	Hyperoside	-	Quercetin-3-glucoside	quercetin glucoside biosynthesis (Arabidopsis), rutin biosynthesis	0.78	0.44	-0.45
117	C0031	3-Methylthio-n-propylglucosinolate	-	3-Methylthiopropylglucosinolate	glucosinolate biosynthesis from homomethionine	0.76	0.41	-0.46
118	C0045	7-Methylthio-n-heptylglucosinolate	-	7-Methylthioheptyl glucosinolate	glucosinolate biosynthesis from pentahomomethionine	0.68	0.32	-0.32
119	C0164	MST_1596.8	-	-	-	-0.68	0.47	-0.46

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