AT5G55040 : -
Query Information
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AGICode AT5G55040
Description DNA-binding bromodomain-containing protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G55040 DNA-binding bromodomain-containing protein 1 0.3 -0.33
2 AT5G08560 transducin family protein / WD-40 repeat family protein 0.85 0.3 -0.32
3 AT1G50030 target of rapamycin target of rapamycin 0.79 0.31 -0.31
4 AT5G35980 yeast YAK1-related gene 1 yeast YAK1-related gene 1 0.77 0.33 -0.33
5 AT5G20030 Plant Tudor-like RNA-binding protein -0.77 0.34 -0.31
6 AT1G10390 Nucleoporin autopeptidase 0.76 0.31 -0.31
7 AT2G22890 Kua-ubiquitin conjugating enzyme hybrid localisation domain -0.75 0.33 -0.3
8 AT5G66490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G50900.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.75 0.33 -0.33
9 AT5G35980 yeast YAK1-related gene 1 yeast YAK1-related gene 1 0.74 0.31 -0.31
10 AT3G13330 proteasome activating protein 200 proteasome activating protein 200 0.74 0.31 -0.32
11 AT1G66230 myb domain protein 20 myb domain protein 20, myb domain
protein 20		 -0.73 0.34 -0.31
12 AT2G26780 ARM repeat superfamily protein 0.73 0.31 -0.32
13 AT3G51620 PAP/OAS1 substrate-binding domain superfamily 0.72 0.31 -0.3
14 AT1G23230 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23
(InterPro:IPR021629); Has 187 Blast hits to 184 proteins in
67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi
- 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 0.71 0.3 -0.31
15 AT5G65720 nitrogen fixation S (NIFS)-like 1 ARABIDOPSIS THALIANA NITROGEN
FIXATION S (NIFS)-LIKE 1, NITROGEN
FIXATION S HOMOLOG 1, nitrogen
fixation S (NIFS)-like 1, NITROGEN
FIXATION S HOMOLOG 1		 0.71 0.29 -0.32
16 AT4G26750 hydroxyproline-rich glycoprotein family protein extensin-like 0.71 0.31 -0.32
17 AT1G02080 transcription regulators 0.71 0.33 -0.29
18 AT2G36850 glucan synthase-like 8 GLUCAN SYNTHASE-LIKE 8, ATGSL8,
CHORUS, GSL08, glucan
synthase-like 8		 0.71 0.31 -0.31
19 AT5G40460 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits
to 87 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.31 -0.32
20 AT3G63500 Protein of unknown function (DUF1423) 0.7 0.31 -0.31
21 AT3G14010 CTC-interacting domain 4 CTC-interacting domain 4 0.7 0.31 -0.31
22 AT3G50060 myb domain protein 77 myb domain protein 77 -0.7 0.31 -0.31
23 AT4G16680 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.34 -0.32
24 AT5G04240 Zinc finger (C2H2 type) family protein / transcription
factor jumonji (jmj) family protein		 EARLY FLOWERING 6 0.7 0.32 -0.3
25 AT2G41000 Chaperone DnaJ-domain superfamily protein 0.69 0.32 -0.31
26 AT4G14580 CBL-interacting protein kinase 4 CBL-interacting protein kinase 4,
SNF1-RELATED PROTEIN KINASE 3.3		 0.69 0.32 -0.31
27 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.69 0.31 -0.32
28 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.68 0.3 -0.3
29 AT1G80560 isopropylmalate dehydrogenase 2 ARABIDOPSIS ISOPROPYLMALATE
DEHYDROGENASE 2, isopropylmalate
dehydrogenase 2		 -0.68 0.35 -0.31
30 AT5G49930 zinc knuckle (CCHC-type) family protein embryo defective 1441 0.68 0.32 -0.32
31 AT2G39260 binding;RNA binding 0.68 0.31 -0.34
32 AT2G28320 Pleckstrin homology (PH) and lipid-binding START
domains-containing protein		 0.68 0.32 -0.31
33 AT4G17240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 8 growth stages; Has 1142 Blast hits to 1055
proteins in 252 species: Archae - 22; Bacteria - 318;
Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other
Eukaryotes - 396 (source: NCBI BLink).		 -0.68 0.31 -0.31
34 AT4G23730 Galactose mutarotase-like superfamily protein -0.67 0.28 -0.31
35 AT2G31190 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 2, weak auxin
response1		 -0.67 0.33 -0.31
36 AT3G09870 SAUR-like auxin-responsive protein family -0.67 0.31 -0.31
37 AT3G46540 ENTH/VHS family protein -0.67 0.32 -0.33
38 AT3G54670 Structural maintenance of chromosomes (SMC) family protein ATSMC1, STRUCTURAL MAINTENANCE OF
CHROMOSOMES 1, TITAN8		 0.67 0.31 -0.31
39 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.67 0.3 -0.3
40 AT5G59410 Rab5-interacting family protein -0.67 0.33 -0.31
41 AT3G22880 DNA repair (Rad51) family protein ARABIDOPSIS HOMOLOG OF LILY
MESSAGES INDUCED AT MEIOSIS 15,
ARABIDOPSIS THALIANA DISRUPTION OF
MEIOTIC CONTROL 1, DISRUPTION OF
MEIOTIC CONTROL 1		 -0.67 0.33 -0.32
42 AT3G05670 RING/U-box protein 0.67 0.3 -0.32
43 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.3 -0.31
44 AT1G68690 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 9, proline-rich
extensin-like receptor kinase 9		 0.66 0.32 -0.32
45 AT1G78370 glutathione S-transferase TAU 20 glutathione S-transferase TAU 20,
glutathione S-transferase TAU 20		 -0.66 0.32 -0.32
46 AT5G13090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.29 -0.28
47 AT1G71890 Major facilitator superfamily protein SUCROSE-PROTON SYMPORTER 5, SUC5 -0.66 0.34 -0.33
48 AT1G77890 DNA-directed RNA polymerase II protein 0.66 0.29 -0.33
49 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.66 0.33 -0.31
50 AT5G23720 dual specificity protein phosphatase family protein PROPYZAMIDE-HYPERSENSITIVE 1 0.66 0.33 -0.33
51 AT1G31730 Adaptin family protein 0.66 0.31 -0.31
52 AT5G51770 Protein kinase superfamily protein 0.65 0.32 -0.3
53 AT5G57130 Clp amino terminal domain-containing protein 0.65 0.32 -0.31
54 AT1G06780 galacturonosyltransferase 6 galacturonosyltransferase 6 0.65 0.33 -0.3
55 AT1G29260 peroxin 7 ARABIDOPSIS PEROXIN 7, peroxin 7 -0.65 0.31 -0.3
56 AT3G24840 Sec14p-like phosphatidylinositol transfer family protein 0.65 0.32 -0.31
57 AT5G42220 Ubiquitin-like superfamily protein 0.65 0.31 -0.31
58 AT1G30490 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 ATHB9, PHAVOLUTA 0.65 0.3 -0.32
59 AT1G32490 RNA helicase family protein EMBRYO DEFECTIVE 2733, ENHANCED
SILENCING PHENOTYPE 3		 0.65 0.31 -0.3
60 AT1G47210 cyclin-dependent protein kinase 3;2 cyclin-dependent protein kinase
3;2		 -0.65 0.31 -0.34
61 AT5G55780 Cysteine/Histidine-rich C1 domain family protein -0.64 0.33 -0.3
62 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.64 0.31 -0.33
63 AT2G25530 AFG1-like ATPase family protein 0.64 0.32 -0.3
64 AT2G07360 SH3 domain-containing protein 0.64 0.29 -0.34
65 AT1G18950 DDT domain superfamily 0.64 0.32 -0.31
66 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.64 0.29 -0.32
67 AT3G12680 floral homeotic protein (HUA1) ENHANCER OF AG-4 1 0.64 0.33 -0.31
68 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding 0.64 0.31 -0.31
69 AT3G43300 HOPM interactor 7 HOPM interactor 7, BFA-VISUALIZED
ENDOCYTIC TRAFFICKING DEFECTIVE1		 0.64 0.32 -0.32
70 AT2G07505 zinc ion binding -0.64 0.32 -0.31
71 AT2G28355 low-molecular-weight cysteine-rich 5 low-molecular-weight cysteine-rich
5		 -0.63 0.32 -0.32
72 AT2G41180 VQ motif-containing protein sigma factor binding protein 2 -0.63 0.32 -0.32
73 AT2G46920 Protein phosphatase 2C family protein poltergeist 0.63 0.31 -0.32
74 AT4G11560 bromo-adjacent homology (BAH) domain-containing protein 0.63 0.33 -0.32
75 AT4G17890 ARF-GAP domain 8 ARF-GAP domain 8 -0.63 0.34 -0.32
76 AT2G17450 RING-H2 finger A3A RING-H2 finger A3A -0.63 0.31 -0.32
77 AT5G61600 ethylene response factor 104 ethylene response factor 104 -0.63 0.3 -0.3
78 AT4G29940 pathogenesis related homeodomain protein A pathogenesis related homeodomain
protein A		 0.63 0.33 -0.3
79 AT5G47830 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 -0.63 0.32 -0.35
80 AT3G63070 Tudor/PWWP/MBT domain-containing protein 0.62 0.31 -0.32
81 AT5G35570 O-fucosyltransferase family protein 0.62 0.31 -0.33
82 AT2G27285 Coiled-coil domain-containing protein 55 (DUF2040) 0.62 0.31 -0.31
83 AT2G27170 Structural maintenance of chromosomes (SMC) family protein STRUCTURAL MAINTENANCE OF
CHROMOSOMES 3, TITAN7		 0.62 0.31 -0.33
84 AT5G24710 Transducin/WD40 repeat-like superfamily protein 0.62 0.32 -0.35
85 AT5G03970 F-box associated ubiquitination effector family protein -0.61 0.33 -0.34
86 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.61 0.33 -0.31
87 AT1G79400 cation/H+ exchanger 2 cation/H+ exchanger 2, cation/H+
exchanger 2		 -0.61 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
88 C0074 Cystine L-Cystine L-Cystine protein precursor 0.82 0.43 -0.44 C0074
89 C0172 MST_2214.3 - - - -0.74 0.44 -0.45
90 C0169 MST_2105.7 - - - -0.73 0.45 -0.44
91 C0144 Maltose D-Maltose α-Maltose starch degradation II 0.68 0.44 -0.43 C0144
92 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.65 0.46 -0.46 C0079