AT5G54350 : -
Query Information
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AGICode AT5G54350
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G54350 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: C2H2-like zinc
finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 1 0.32 -0.3
2 AT3G21175 ZIM-like 1 GATA TRANSCRIPTION FACTOR 24,
TIFY2B, ZIM LIKE 1, ZIM-like 1		 -0.73 0.31 -0.32
3 AT5G09920 RNA polymerase II, Rpb4, core protein ATRPB15.9, NRPB4, RPB15.9,
RPB15.9.9		 -0.69 0.31 -0.33
4 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein -0.69 0.33 -0.32
5 AT3G22350 F-box and associated interaction domains-containing protein 0.68 0.34 -0.32
6 AT2G03260 EXS (ERD1/XPR1/SYG1) family protein 0.68 0.3 -0.32
7 AT2G43770 Transducin/WD40 repeat-like superfamily protein -0.68 0.3 -0.34
8 AT3G58770 unknown protein; Has 38 Blast hits to 36 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.67 0.34 -0.34
9 AT4G10810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G24026.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.67 0.32 -0.32
10 AT3G07400 lipase class 3 family protein 0.66 0.31 -0.31
11 AT3G25850 Cysteine/Histidine-rich C1 domain family protein -0.66 0.32 -0.32
12 AT5G11360 Interleukin-1 receptor-associated kinase 4 protein 0.65 0.34 -0.33
13 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 -0.65 0.33 -0.3
14 AT1G65270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages; Has
149 Blast hits to 149 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.65 0.31 -0.31
15 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 -0.65 0.31 -0.31
16 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 -0.65 0.33 -0.31
17 AT5G25760 peroxin4 peroxin4, ubiquitin-conjugating
enzyme 21		 -0.65 0.28 -0.33
18 AT2G07040 Leucine-rich repeat protein kinase family protein ATPRK2A, PRK2A -0.65 0.32 -0.31
19 AT4G17760 damaged DNA binding;exodeoxyribonuclease IIIs -0.64 0.33 -0.31
20 AT4G38680 glycine rich protein 2 ARABIDOPSIS THALIANA COLD SHOCK
PROTEIN 2, COLD SHOCK DOMAIN
PROTEIN 2, COLD SHOCK PROTEIN 2,
glycine rich protein 2		 -0.64 0.31 -0.29
21 AT5G37780 calmodulin 1 ACAM-1, calmodulin 1, TOUCH 1 -0.64 0.32 -0.31
22 AT3G21470 Pentatricopeptide repeat (PPR-like) superfamily protein -0.64 0.3 -0.31
23 AT5G05260 cytochrome p450 79a2 cytochrome p450 79a2 0.64 0.33 -0.31
24 AT5G11150 vesicle-associated membrane protein 713 vesicle-associated membrane
protein 713, VAMP713,
vesicle-associated membrane
protein 713		 -0.64 0.32 -0.28
25 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 -0.63 0.31 -0.31
26 AT2G26940 C2H2-type zinc finger family protein -0.63 0.3 -0.32
27 AT5G42000 ORMDL family protein -0.63 0.31 -0.32
28 AT3G28490 Oxoglutarate/iron-dependent oxygenase -0.63 0.32 -0.31
29 AT3G28120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.63 0.32 -0.32
30 AT3G19780 LOCATED IN: endomembrane system; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF179
(InterPro:IPR003774), Thioredoxin fold
(InterPro:IPR012335), Thioredoxin-like fold
(InterPro:IPR012336); BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF179)
(TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32
species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi -
3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.62 0.3 -0.35
31 AT2G21000 transposable element gene -0.62 0.33 -0.33
32 AT3G46020 RNA-binding (RRM/RBD/RNP motifs) family protein -0.62 0.34 -0.32
33 AT2G03870 Small nuclear ribonucleoprotein family protein EMBRYO DEFECTIVE 2816 -0.62 0.33 -0.32
34 AT1G72570 Integrase-type DNA-binding superfamily protein -0.62 0.32 -0.31
35 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.62 0.29 -0.29
36 AT3G08630 Protein of unknown function (DUF3411) -0.62 0.31 -0.31
37 AT4G37340 cytochrome P450, family 81, subfamily D, polypeptide 3 cytochrome P450, family 81,
subfamily D, polypeptide 3		 0.62 0.31 -0.31
38 AT3G46030 Histone superfamily protein HTB11 -0.62 0.31 -0.32
39 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 -0.62 0.31 -0.31
40 AT4G29390 Ribosomal protein S30 family protein -0.61 0.29 -0.31
41 AT3G42070 transposable element gene 0.61 0.3 -0.31
42 AT3G19760 eukaryotic initiation factor 4A-III eukaryotic initiation factor
4A-III		 -0.61 0.32 -0.3
43 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.61 0.3 -0.31
44 AT5G46860 Syntaxin/t-SNARE family protein ARABIDOPSIS THALIANA SYNTAXIN OF
PLANTS 22, ARABIDOPSIS THALIANA
VACUOLAR MORPHOLOGY 3, SHOOT
GRAVITROPISM 3, SYNTAXIN OF PLANTS
22, VACUOLAR MORPHOLOGY 3		 -0.61 0.32 -0.33
45 AT3G59810 Small nuclear ribonucleoprotein family protein -0.61 0.31 -0.33
46 AT5G48270 Plant protein of unknown function (DUF868) 0.61 0.31 -0.32
47 AT2G04410 RPM1-interacting protein 4 (RIN4) family protein -0.61 0.33 -0.33
48 AT3G04690 Malectin/receptor-like protein kinase family protein ANXUR1 -0.61 0.31 -0.3
49 AT2G43260 F-box and associated interaction domains-containing protein -0.6 0.32 -0.33
50 AT5G39310 expansin A24 ATEXP24, expansin A24, ATHEXP
ALPHA 1.19, EXPANSIN 24, expansin
A24		 -0.6 0.32 -0.32
51 AT2G29700 pleckstrin homologue 1 pleckstrin homologue 1, pleckstrin
homologue 1		 -0.6 0.29 -0.31
52 AT5G12260 BEST Arabidopsis thaliana protein match is:
glycosyltransferase family protein 2 (TAIR:AT5G60700.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.6 0.31 -0.3
53 AT4G39610 Protein of unknown function, DUF617 -0.6 0.31 -0.31
54 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.6 0.31 -0.29
55 AT2G23860 pseudogene, similar to VAP27, blastp match of 56% identity
and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365
VAP27 {Nicotiana plumbaginifolia}		 0.6 0.3 -0.32
56 AT5G10880 tRNA synthetase-related / tRNA ligase-related 0.6 0.32 -0.32
57 AT1G54650 Methyltransferase family protein -0.6 0.33 -0.33
58 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 -0.6 0.31 -0.29
59 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.6 0.31 -0.3
60 AT4G24950 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.59 0.32 -0.32
61 AT1G69670 cullin 3B ARABIDOPSIS THALIANA CULLIN 3B,
cullin 3B		 -0.59 0.31 -0.31
62 AT5G26190 Cysteine/Histidine-rich C1 domain family protein 0.59 0.33 -0.31
63 AT1G30480 D111/G-patch domain-containing protein DNA-DAMAGE-REPAIR/TOLERATION
PROTEIN 111		 -0.59 0.35 -0.33
64 AT5G57670 Protein kinase superfamily protein 0.59 0.32 -0.31
65 AT3G53000 phloem protein 2-A15 phloem protein 2-A15, phloem
protein 2-A15		 -0.58 0.31 -0.31
66 AT3G22700 F-box and associated interaction domains-containing protein -0.58 0.31 -0.32
67 AT2G38550 Transmembrane proteins 14C -0.58 0.31 -0.3
68 AT1G56180 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in
83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi
- 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123
(source: NCBI BLink).		 -0.58 0.31 -0.31
69 AT1G12310 Calcium-binding EF-hand family protein -0.58 0.32 -0.31
70 AT1G30560 Major facilitator superfamily protein glycerol-3-phosphate permease 3,
glycerol-3-phosphate permease 3		 0.58 0.31 -0.32
71 AT3G51590 lipid transfer protein 12 lipid transfer protein 12 0.58 0.31 -0.32
72 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.58 0.32 -0.3
73 AT2G30240 Cation/hydrogen exchanger family protein ATCHX13, CATION/H+ EXCHANGER 13 -0.58 0.32 -0.32
74 AT5G28930 transposable element gene 0.58 0.31 -0.3
75 AT2G36485 ENTH/VHS family protein -0.58 0.3 -0.32
76 AT5G52340 exocyst subunit exo70 family protein A2 exocyst subunit exo70 family
protein A2, exocyst subunit exo70
family protein A2		 -0.58 0.33 -0.3
77 AT1G19120 Small nuclear ribonucleoprotein family protein -0.58 0.32 -0.32
78 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.32 -0.31
79 AT2G27395 pseudogene of cysteine protease-related 0.58 0.34 -0.3
80 AT2G15720 transposable element gene 0.58 0.32 -0.31
81 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 0.58 0.32 -0.3
82 AT3G20400 F-box associated ubiquitination effector family protein EMBRYO DEFECTIVE 2743 0.58 0.32 -0.31
83 AT5G53470 acyl-CoA binding protein 1 ACYL-COA BINDING PROTEIN, acyl-CoA
binding protein 1		 -0.58 0.34 -0.31
84 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.3 -0.32
85 AT5G04670 Enhancer of polycomb-like transcription factor protein -0.57 0.31 -0.32
86 AT3G51190 Ribosomal protein L2 family 0.57 0.31 -0.32
87 AT2G14835 RING/U-box superfamily protein -0.57 0.32 -0.32
88 AT1G36000 LOB domain-containing protein 5 LOB domain-containing protein 5 -0.57 0.32 -0.32
89 AT4G05000 Vacuolar protein sorting-associated protein VPS28 family
protein		 vacuolar protein
sorting-associated protein 28
homolog 1, VPS28-2		 -0.57 0.31 -0.31
90 AT5G62160 zinc transporter 12 precursor zinc transporter 12 precursor,
zinc transporter 12 precursor		 0.57 0.32 -0.3
91 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 0.57 0.33 -0.31
92 AT1G13690 ATPase E1 ATPase E1 -0.57 0.29 -0.34
93 ATMG00060 NADH dehydrogenase subunit 5C NADH DEHYDROGENASE SUBUNIT 5, NADH
DEHYDROGENASE SUBUNIT 5.3, NADH
dehydrogenase subunit 5C		 0.57 0.3 -0.35
94 AT4G15460 glycine-rich protein 0.57 0.3 -0.3
95 AT5G25360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.57 0.29 -0.31
96 AT3G18910 EIN2 targeting protein2 EIN2 targeting protein2 -0.57 0.32 -0.3
97 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 -0.57 0.31 -0.3
98 AT4G17430 O-fucosyltransferase family protein -0.56 0.3 -0.33
99 AT5G04270 DHHC-type zinc finger family protein -0.56 0.29 -0.32
100 AT4G29140 MATE efflux family protein ACTIVATED DISEASE SUSCEPTIBILITY 1 -0.56 0.31 -0.32
101 AT1G34545 transposable element gene 0.56 0.3 -0.32
102 AT5G40600 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.56 0.3 -0.33
103 AT5G20880 transposable element gene -0.56 0.33 -0.33
104 AT3G60790 F-box family protein 0.56 0.31 -0.29
105 AT1G06970 cation/hydrogen exchanger 14 ATCHX14, cation/hydrogen exchanger
14		 -0.56 0.31 -0.3
106 AT1G50160 BEST Arabidopsis thaliana protein match is: Polynucleotidyl
transferase, ribonuclease H-like superfamily protein
(TAIR:AT2G04420.1); Has 34 Blast hits to 34 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.32 -0.33
107 AT1G17240 receptor like protein 2 receptor like protein 2, receptor
like protein 2		 0.55 0.31 -0.31
108 AT1G11690 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G20350.1); Has 5959 Blast hits
to 4807 proteins in 476 species: Archae - 156; Bacteria -
436; Metazoa - 2789; Fungi - 309; Plants - 336; Viruses -
9; Other Eukaryotes - 1924 (source: NCBI BLink).		 0.55 0.33 -0.33
109 AT4G34440 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 5, proline-rich
extensin-like receptor kinase 5		 0.55 0.31 -0.34
110 AT4G04500 cysteine-rich RLK (RECEPTOR-like protein kinase) 37 cysteine-rich RLK (RECEPTOR-like
protein kinase) 37		 0.55 0.32 -0.31
111 AT3G25840 Protein kinase superfamily protein 0.55 0.32 -0.33