AT5G52230 : methyl-CPG-binding domain protein 13
Query Information
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AGICode AT5G52230
Description methyl-CPG-binding domain protein 13
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G52230 methyl-CPG-binding domain protein 13 methyl-CPG-binding domain protein
13		 1 0.32 -0.33
2 AT1G53210 sodium/calcium exchanger family protein / calcium-binding
EF hand family protein		 0.73 0.31 -0.32
3 AT2G18040 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 peptidylprolyl cis/trans
isomerase, NIMA-interacting 1		 -0.72 0.32 -0.32
4 AT4G14800 20S proteasome beta subunit D2 20S proteasome beta subunit D2 -0.72 0.31 -0.32
5 AT3G17290 transposable element gene 0.7 0.29 -0.32
6 AT5G23540 Mov34/MPN/PAD-1 family protein -0.7 0.32 -0.31
7 AT4G11120 translation elongation factor Ts (EF-Ts), putative -0.7 0.32 -0.34
8 AT1G63700 Protein kinase superfamily protein EMBRYO DEFECTIVE 71, MAP KINASE
KINASE KINASE 4, YODA		 0.7 0.32 -0.33
9 AT3G14290 20S proteasome alpha subunit E2 20S proteasome alpha subunit E2 -0.7 0.3 -0.32
10 AT4G31300 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBA1 -0.69 0.28 -0.31
11 AT1G74160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits
to 2217 proteins in 314 species: Archae - 0; Bacteria -
264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses -
34; Other Eukaryotes - 1149 (source: NCBI BLink).		 0.69 0.34 -0.32
12 AT1G17860 Kunitz family trypsin and protease inhibitor protein -0.68 0.33 -0.3
13 AT4G40020 Myosin heavy chain-related protein -0.68 0.32 -0.32
14 AT3G18760 Translation elongation factor EF1B/ribosomal protein S6
family protein		 -0.68 0.3 -0.31
15 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR -0.68 0.33 -0.31
16 AT5G13070 MSF1-like family protein -0.68 0.33 -0.31
17 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 -0.68 0.32 -0.33
18 AT1G30630 Coatomer epsilon subunit -0.67 0.3 -0.31
19 AT4G15730 CW-type Zinc Finger 0.67 0.32 -0.31
20 AT4G11260 phosphatase-related ATSGT1B, ENHANCED DOWNY MILDEW 1,
ENHANCER OF TIR1-1 AUXIN
RESISTANCE 3, RPR1, SGT1B		 -0.67 0.31 -0.33
21 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 -0.67 0.33 -0.32
22 AT1G63430 Leucine-rich repeat protein kinase family protein 0.67 0.34 -0.31
23 AT4G38180 FAR1-related sequence 5 FAR1-related sequence 5 0.66 0.31 -0.32
24 AT3G61800 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2043 (InterPro:IPR018610), ENTH/VHS
(InterPro:IPR008942); Has 308 Blast hits to 279 proteins in
95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi
- 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91
(source: NCBI BLink).		 0.66 0.32 -0.32
25 AT2G45070 Preprotein translocase Sec, Sec61-beta subunit protein SUPPRESSORS OF SECRETION-DEFECTIVE
61 BETA		 -0.66 0.32 -0.31
26 AT2G27020 20S proteasome alpha subunit G1 20S proteasome alpha subunit G1 -0.66 0.31 -0.3
27 AT5G55390 ENHANCED DOWNY MILDEW 2 ENHANCED DOWNY MILDEW 2 0.66 0.31 -0.3
28 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A		 -0.66 0.32 -0.3
29 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.66 0.32 -0.33
30 AT3G03240 alpha/beta-Hydrolases superfamily protein 0.66 0.33 -0.3
31 AT2G38905 Low temperature and salt responsive protein family 0.66 0.3 -0.33
32 AT3G51260 20S proteasome alpha subunit PAD1 20S proteasome alpha subunit PAD1 -0.65 0.32 -0.3
33 AT1G08220 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
mitochondrial proton-transporting ATP synthase complex
assembly; LOCATED IN: mitochondrial inner membrane;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly
factor ATP10, mitochondria (InterPro:IPR007849); Has 168
Blast hits to 168 proteins in 86 species: Archae - 6;
Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30;
Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).		 -0.65 0.31 -0.32
34 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 0.65 0.32 -0.31
35 AT1G67250 Proteasome maturation factor UMP1 -0.65 0.31 -0.28
36 AT4G02980 endoplasmic reticulum auxin binding protein 1 ABP, endoplasmic reticulum auxin
binding protein 1		 -0.65 0.33 -0.3
37 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.33
38 AT5G02050 Mitochondrial glycoprotein family protein -0.65 0.29 -0.34
39 AT5G07050 nodulin MtN21 /EamA-like transporter family protein 0.65 0.32 -0.33
40 AT4G26210 Mitochondrial ATP synthase subunit G protein -0.65 0.31 -0.31
41 AT1G48090 calcium-dependent lipid-binding family protein 0.65 0.33 -0.32
42 AT4G01100 adenine nucleotide transporter 1 adenine nucleotide transporter 1 -0.64 0.31 -0.33
43 AT5G14030 translocon-associated protein beta (TRAPB) family protein -0.64 0.3 -0.31
44 ATCG00530 CemA-like proton extrusion protein-related YCF10 0.64 0.3 -0.32
45 AT4G38630 regulatory particle non-ATPase 10 ATMCB1, MULTIUBIQUITIN CHAIN
BINDING PROTEIN 1,
MULTIUBIQUITIN-CHAIN-BINDING
PROTEIN 1, regulatory particle
non-ATPase 10		 -0.64 0.32 -0.32
46 AT5G03630 Pyridine nucleotide-disulphide oxidoreductase family
protein		 ATMDAR2 -0.63 0.31 -0.31
47 AT1G56570 Tetratricopeptide repeat (TPR)-like superfamily protein PENTATRICOPEPTIDE REPEAT PROTEIN
FOR GERMINATION ON NaCl		 0.63 0.32 -0.32
48 AT1G47260 gamma carbonic anhydrase 2 APFI, gamma carbonic anhydrase 2 -0.63 0.32 -0.31
49 AT3G03620 MATE efflux family protein 0.63 0.3 -0.3
50 AT5G27050 AGAMOUS-like 101 AGAMOUS-like 101 0.63 0.32 -0.34
51 AT2G20420 ATP citrate lyase (ACL) family protein -0.63 0.33 -0.31
52 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 -0.63 0.31 -0.32
53 AT4G27270 Quinone reductase family protein -0.63 0.31 -0.32
54 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 -0.63 0.32 -0.31
55 AT5G51840 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.33 -0.32
56 AT2G18030 Peptide methionine sulfoxide reductase family protein -0.63 0.33 -0.34
57 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.63 0.32 -0.31
58 AT1G77440 20S proteasome beta subunit C2 20S proteasome beta subunit C2 -0.63 0.33 -0.29
59 AT5G65270 RAB GTPase homolog A4A RAB GTPase homolog A4A, RAB GTPase
homolog A4A		 -0.63 0.31 -0.31
60 AT2G45620 Nucleotidyltransferase family protein 0.63 0.33 -0.32
61 AT5G54280 myosin 2 myosin 2, ARABIDOPSIS THALIANA
MYOSIN 4, ARABIDOPSIS THALIANA
MYOSIN 1		 0.62 0.3 -0.32
62 AT1G53850 20S proteasome alpha subunit E1 ARABIDOPSIS 20S PROTEASOME ALPHA
SUBUNIT E1, 20S proteasome alpha
subunit E1		 -0.62 0.31 -0.31
63 AT2G03800 D-aminoacyl-tRNA deacylases GEKO1 -0.62 0.32 -0.32
64 AT3G28260 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 0.62 0.31 -0.32
65 AT1G68490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.33 -0.32
66 AT2G41110 calmodulin 2 ATCAL5, calmodulin 2 -0.62 0.32 -0.31
67 AT1G55970 histone acetyltransferase of the CBP family 4 HAC04, histone acetyltransferase
of the CBP family 4, HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 6, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 04, HISTONE
ACETYLTRANSFERASE OF THE GNAT/MYST
SUPERFAMILY 4		 0.62 0.3 -0.32
68 AT3G05230 Signal peptidase subunit -0.62 0.32 -0.32
69 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 -0.62 0.31 -0.3
70 AT2G43800 Actin-binding FH2 (formin homology 2) family protein 0.62 0.3 -0.31
71 AT1G29990 prefoldin 6 prefoldin 6 -0.61 0.32 -0.3
72 AT1G23100 GroES-like family protein -0.61 0.31 -0.33
73 AT1G63000 nucleotide-rhamnose synthase/epimerase-reductase nucleotide-rhamnose
synthase/epimerase-reductase,
UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-E
PIMERASE-4-REDUCTASE 1		 -0.61 0.32 -0.31
74 AT3G52390 TatD related DNase -0.61 0.32 -0.31
75 AT2G43600 Chitinase family protein -0.61 0.31 -0.3
76 AT5G13950 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits
to 145 proteins in 44 species: Archae - 0; Bacteria - 2;
Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.61 0.29 -0.3
77 AT5G15880 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.61 0.32 -0.32
78 AT5G20080 FAD/NAD(P)-binding oxidoreductase -0.61 0.31 -0.33
79 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 -0.61 0.32 -0.33
80 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase		 -0.61 0.33 -0.32
81 AT1G69680 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 -0.61 0.31 -0.31
82 AT1G14940 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.61 0.29 -0.31
83 AT3G48140 B12D protein -0.61 0.32 -0.3
84 AT5G45010 DSS1 homolog on chromosome V DSS1 homolog on chromosome V, DSS1
homolog on chromosome V		 -0.61 0.31 -0.31
85 AT1G24095 Putative thiol-disulphide oxidoreductase DCC -0.61 0.33 -0.32
86 AT3G04860 Plant protein of unknown function (DUF868) 0.61 0.31 -0.34
87 AT1G22600 Late embryogenesis abundant protein (LEA) family protein 0.61 0.32 -0.3
88 AT1G18630 glycine-rich RNA-binding protein 6 glycine-rich RNA-binding protein 6 -0.6 0.31 -0.32
89 AT4G00585 unknown protein; Has 47 Blast hits to 47 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7;
Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.6 0.29 -0.33
90 AT1G27450 adenine phosphoribosyl transferase 1 adenine phosphoribosyl transferase
1, ARABIDOPSIS THALIANA ADENINE
PHOSPHORIBOSYLTRANSFERASE 1		 -0.6 0.3 -0.3
91 AT3G46430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, mitochondrial respiratory chain complex III;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.3 -0.34
92 AT5G51700 protein binding;zinc ion binding ATRAR1, PPHB SUSCEPTIBLE 2,
Required for Mla12 resistance 1,
RPR2		 -0.6 0.31 -0.33
93 AT5G04380 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.6 0.31 -0.3
94 AT4G25980 Peroxidase superfamily protein 0.6 0.32 -0.32
95 AT3G03600 ribosomal protein S2 ribosomal protein S2 -0.6 0.35 -0.31
96 AT5G05320 FAD/NAD(P)-binding oxidoreductase family protein 0.6 0.31 -0.32
97 AT1G15120 Ubiquinol-cytochrome C reductase hinge protein -0.6 0.32 -0.31
98 AT4G10690 transposable element gene 0.6 0.29 -0.31
99 AT1G07210 Ribosomal protein S18 -0.6 0.33 -0.31
100 AT4G22000 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.59 0.3 -0.31
101 AT1G31030 transposable element gene 0.59 0.32 -0.31
102 AT2G30870 glutathione S-transferase PHI 10 ARABIDOPSIS THALIANA GLUTATHIONE
S-TRANSFERASE PHI 10, ATGSTF4,
EARLY DEHYDRATION-INDUCED 13,
glutathione S-transferase PHI 10		 -0.59 0.31 -0.31
103 AT2G31980 PHYTOCYSTATIN 2 PHYTOCYSTATIN 2, PHYTOCYSTATIN 2 0.59 0.32 -0.31
104 AT4G38920 vacuolar-type H(+)-ATPase C3 vacuolar-type H(+)-ATPase C3,
AVA-P3, vacuolar-type H(+)-ATPase
C3		 -0.59 0.32 -0.33
105 AT5G55240 ARABIDOPSIS THALIANA PEROXYGENASE 2 ARABIDOPSIS THALIANA PEROXYGENASE
2		 0.59 0.32 -0.31
106 AT4G14110 COP9 signalosome, subunit CSN8 CONSTITUTIVE PHOTOMORPHOGENIC 9,
COP9 SIGNALOSOME SUBUNIT 8, EMBRYO
DEFECTIVE 143, FUSCA 7		 -0.59 0.34 -0.33
107 AT4G14420 HR-like lesion-inducing protein-related -0.59 0.3 -0.29
108 AT2G44065 Ribosomal protein L2 family -0.59 0.31 -0.31
109 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5		 -0.59 0.31 -0.3
110 AT5G40750 FBD / Leucine Rich Repeat domains containing protein 0.59 0.31 -0.32
111 AT5G48340 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.32 -0.31
112 AT1G75510 Transcription initiation factor IIF, beta subunit -0.59 0.31 -0.32
113 AT3G50210 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.59 0.33 -0.32
114 AT1G49400 Nucleic acid-binding, OB-fold-like protein embryo defective 1129 -0.59 0.3 -0.33
115 AT4G34240 aldehyde dehydrogenase 3I1 aldehyde dehydrogenase 3, aldehyde
dehydrogenase 3I1		 0.59 0.32 -0.31
116 AT3G31910 Domain of unknown function (DUF1985) 0.59 0.3 -0.29
117 AT1G27435 unknown protein; Has 16 Blast hits to 16 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.33 -0.3
118 AT1G02020 nitroreductase family protein 0.58 0.32 -0.32
119 AT1G63490 transcription factor jumonji (jmjC) domain-containing
protein		 0.58 0.3 -0.31
120 AT4G11330 MAP kinase 5 MAP kinase 5, MAP kinase 5 0.58 0.32 -0.33
121 AT1G09010 glycoside hydrolase family 2 protein 0.58 0.29 -0.3
122 AT3G24890 vesicle-associated membrane protein 728 ATVAMP728, vesicle-associated
membrane protein 728		 0.58 0.3 -0.32
123 AT3G29220 transposable element gene 0.57 0.32 -0.32
124 AT5G22750 DNA/RNA helicase protein RAD5, RAD5A 0.57 0.31 -0.3
125 AT1G27990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits
to 86 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.57 0.33 -0.3
126 AT3G17310 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 AtDRM3, domains rearranged
methyltransferase 3		 0.56 0.32 -0.33
127 AT5G58530 Glutaredoxin family protein 0.56 0.31 -0.3
128 AT3G10810 zinc finger (C3HC4-type RING finger) family protein 0.56 0.32 -0.33
129 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 0.56 0.31 -0.33
130 AT4G14760 kinase interacting (KIP1-like) family protein 0.56 0.3 -0.31
131 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 0.55 0.29 -0.32
132 AT3G52510 F-box associated ubiquitination effector family protein 0.55 0.3 -0.31
133 AT4G30200 vernalization5/VIN3-like vernalization5/VIN3-like 1,
VIN3-Like 2		 0.55 0.33 -0.32
134 AT3G58330 Arabidopsis phospholipase-like protein (PEARLI 4) family 0.55 0.3 -0.33
135 AT1G05460 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SILENCING DEFECTIVE 0.55 0.3 -0.32
136 AT2G32000 DNA topoisomerase, type IA, core 0.55 0.32 -0.31
137 AT5G52975 Protein of unknown function (DUF1278) 0.55 0.32 -0.31
138 AT1G71350 eukaryotic translation initiation factor SUI1 family
protein		 0.55 0.32 -0.32
139 AT1G14550 Peroxidase superfamily protein 0.55 0.31 -0.31
140 AT1G63470 AT hook motif DNA-binding family protein 0.55 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
141 C0003 α-Tocopherol - alpha-Tocopherol vitamin E biosynthesis 0.71 0.46 -0.43 C0003