AT5G52140 : -
Query Information
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AGICode AT5G52140
Description RING/U-box superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G52140 RING/U-box superfamily protein 1 0.31 -0.3
2 AT5G01280 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.66 0.31 -0.29
3 AT2G47660 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.66 0.31 -0.32
4 AT4G21323 Subtilase family protein -0.66 0.32 -0.34
5 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.66 0.32 -0.31
6 AT1G51700 DOF zinc finger protein 1 DOF zinc finger protein 1, DOF
zinc finger protein 1		 0.66 0.32 -0.31
7 AT1G05380 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 -0.64 0.3 -0.32
8 AT5G22910 cation/H+ exchanger 9 ARABIDOPSIS THALIANA CATION/H+
EXCHANGER 9, cation/H+ exchanger
9		 -0.64 0.3 -0.32
9 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.64 0.31 -0.31
10 AT3G21830 SKP1-like 8 SKP1-like 8, SKP1-like 8 0.64 0.32 -0.31
11 AT5G53800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.32 -0.34
12 AT2G04830 Protein of unknown function (DUF295) -0.63 0.32 -0.3
13 AT5G48280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.63 0.31 -0.31
14 AT1G69430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits
to 215 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.33 -0.3
15 AT1G32480 isocitrate dehydrogenase IV isocitrate dehydrogenase IV -0.63 0.32 -0.3
16 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.3 -0.32
17 AT3G32100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.32 -0.31
18 AT5G53840 F-box/RNI-like/FBD-like domains-containing protein 0.63 0.32 -0.3
19 AT5G04210 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.63 0.31 -0.29
20 AT2G42100 Actin-like ATPase superfamily protein 0.63 0.31 -0.32
21 AT3G32080 transposable element gene -0.63 0.33 -0.31
22 AT1G22010 unknown protein; Has 12 Blast hits to 12 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.63 0.3 -0.33
23 AT2G16840 transposable element gene 0.62 0.31 -0.31
24 AT1G03280 Transcription factor TFIIE, alpha subunit -0.62 0.3 -0.31
25 AT5G13790 AGAMOUS-like 15 AGAMOUS-like 15 0.62 0.32 -0.3
26 AT1G12470 zinc ion binding -0.61 0.3 -0.33
27 AT3G28280 BEST Arabidopsis thaliana protein match is: F-box family
protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to
100 proteins in 3 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.33 -0.34
28 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.33 -0.33
29 AT1G34080 transposable element gene -0.6 0.32 -0.29
30 AT2G17930 Phosphatidylinositol 3- and 4-kinase family protein with
FAT domain		 -0.6 0.33 -0.35
31 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 -0.6 0.32 -0.31
32 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG -0.6 0.3 -0.33
33 AT1G59650 Protein of unknown function (DUF1336) CW14 -0.6 0.31 -0.32
34 AT3G50370 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; Has 27734
Blast hits to 16708 proteins in 1259 species: Archae - 81;
Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants -
987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI
BLink).		 -0.59 0.32 -0.3
35 AT2G10760 transposable element gene -0.59 0.31 -0.33
36 AT1G31910 GHMP kinase family protein -0.59 0.32 -0.33
37 AT3G14640 cytochrome P450, family 72, subfamily A, polypeptide 10 cytochrome P450, family 72,
subfamily A, polypeptide 10		 -0.59 0.32 -0.29
38 AT5G34895 transposable element gene 0.59 0.3 -0.32
39 AT2G05400 Ubiquitin-specific protease family C19-related protein 0.59 0.31 -0.32
40 AT3G03570 Protein of unknown function (DUF3550/UPF0682) -0.59 0.32 -0.32
41 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 0.58 0.31 -0.3
42 AT3G42350 transposable element gene -0.58 0.32 -0.29
43 AT5G48750 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 0.58 0.34 -0.32
44 AT1G78290 Protein kinase superfamily protein SNF1-RELATED PROTEIN KINASE 2-8,
SNF1-RELATED PROTEIN KINASE 2.8,
SNF1-RELATED PROTEIN KINASE 2C		 0.58 0.32 -0.29
45 AT3G62180 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.58 0.3 -0.32
46 AT5G19240 Glycoprotein membrane precursor GPI-anchored 0.58 0.32 -0.31
47 AT4G00660 RNAhelicase-like 8 ATRH8, RNAhelicase-like 8 -0.58 0.31 -0.3
48 AT2G07505 zinc ion binding 0.58 0.33 -0.33
49 AT3G42340 transposable element gene 0.57 0.32 -0.3
50 AT2G07360 SH3 domain-containing protein -0.57 0.31 -0.31
51 AT2G24600 Ankyrin repeat family protein 0.57 0.3 -0.31
52 AT4G36630 Vacuolar sorting protein 39 EMBRYO DEFECTIVE 2754 -0.57 0.31 -0.32
53 AT1G60380 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.57 0.31 -0.29
54 AT5G65580 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.57 0.3 -0.3
55 AT5G35760 Beta-galactosidase related protein 0.56 0.33 -0.31
56 AT5G03970 F-box associated ubiquitination effector family protein 0.56 0.3 -0.3
57 AT3G23870 Protein of unknown function (DUF803) -0.56 0.32 -0.3
58 AT2G44430 DNA-binding bromodomain-containing protein -0.56 0.33 -0.29
59 AT3G13220 ABC-2 type transporter family protein ATP-binding cassette G26,
AtABCG26, MSR02, WBC27		 -0.56 0.32 -0.31
60 AT4G25470 C-repeat/DRE binding factor 2 ATCBF2, C-repeat/DRE binding
factor 2, DRE/CRT-BINDING PROTEIN
1C, FREEZING TOLERANCE QTL 4		 0.56 0.32 -0.3
61 AT1G71760 unknown protein; Has 92 Blast hits to 92 proteins in 41
species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink).		 0.56 0.3 -0.31
62 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 0.56 0.3 -0.3
63 AT3G18480 CCAAT-displacement protein alternatively spliced product CCAAT-displacement protein
alternatively spliced product,
CCAAT-displacement protein
alternatively spliced product		 -0.56 0.32 -0.31
64 AT3G63180 TIC-like TICKLE, TIC-like -0.55 0.32 -0.35
65 AT2G28440 proline-rich family protein -0.55 0.33 -0.29
66 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 -0.55 0.31 -0.32
67 AT5G27150 Na+/H+ exchanger 1 AT-NHX1, ATNHX, ATNHX1, Na+/H+
exchanger 1		 -0.55 0.33 -0.32
68 AT5G18880 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 0.55 0.32 -0.34
69 AT1G80740 chromomethylase 1 chromomethylase 1, DNA
METHYLTRANSFERASE 4		 0.55 0.34 -0.3
70 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 -0.55 0.3 -0.32
71 AT3G27410 unknown protein; Has 10 Blast hits to 10 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.34 -0.3
72 AT3G46920 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.54 0.31 -0.32
73 AT2G05010 transposable element gene 0.54 0.32 -0.32
74 AT5G18810 SC35-like splicing factor 28 SC35-like splicing factor 28,
SC35-like splicing factor 28		 0.54 0.29 -0.33
75 AT3G04605 transposable element gene -0.54 0.32 -0.31
76 AT2G27460 sec23/sec24 transport family protein -0.54 0.3 -0.3
77 AT1G35647 transposable element gene 0.54 0.32 -0.3
78 AT1G71820 SEC6 SEC6 -0.54 0.31 -0.32
79 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 -0.53 0.31 -0.29
80 AT2G45540 WD-40 repeat family protein / beige-related -0.53 0.31 -0.33
81 AT4G39756 Galactose oxidase/kelch repeat superfamily protein 0.53 0.32 -0.33
82 AT3G50590 Transducin/WD40 repeat-like superfamily protein -0.53 0.32 -0.32
83 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 -0.53 0.29 -0.33
84 AT3G19500 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.53 0.33 -0.33
85 AT1G62440 leucine-rich repeat/extensin 2 leucine-rich repeat/extensin 2 -0.53 0.32 -0.33
86 AT5G53480 ARM repeat superfamily protein -0.53 0.31 -0.29
87 AT4G09760 Protein kinase superfamily protein 0.53 0.33 -0.31
88 AT5G49240 pseudo-response regulator 4 pseudo-response regulator 4,
PSEUDO-RESPONSE REGULATOR 4		 0.53 0.33 -0.33
89 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 0.53 0.33 -0.32
90 AT1G50530 BEST Arabidopsis thaliana protein match is:
Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.53 0.34 -0.31
91 AT5G66640 DA1-related protein 3 DA1-related protein 3 0.53 0.32 -0.31
92 AT4G17580 Bax inhibitor-1 family protein 0.52 0.29 -0.29
93 AT1G50350 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT3G19950.1); Has 37 Blast hits
to 37 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.34 -0.33
94 AT1G35740 pseudogene, similar to putative beta-1,3-glucan synthase,
blastp match of 57% identity and 2.1e-14 P-value to
GP|23503034|gb|AAK49452.2|AF304372_1|AF304372 putative
beta-1,3-glucan synthase {Nicotiana alata}		 0.52 0.32 -0.32
95 AT2G03630 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits
to 126 proteins in 28 species: Archae - 0; Bacteria - 6;
Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink).		 0.52 0.32 -0.31
96 AT1G18530 EF hand calcium-binding protein family 0.52 0.31 -0.29
97 AT1G49840 Protein of unknown function (DUF620) 0.52 0.31 -0.32
98 AT1G15530 Concanavalin A-like lectin protein kinase family protein 0.51 0.31 -0.32
99 AT1G02950 glutathione S-transferase F4 glutathione S-transferase F4,
GLUTATHIONE S-TRANSFERASE 31,
glutathione S-transferase F4		 0.51 0.31 -0.31
100 AT3G21590 Senescence/dehydration-associated protein-related 0.51 0.31 -0.32
101 AT1G77780 Glycosyl hydrolase superfamily protein 0.51 0.29 -0.33
102 AT1G35230 arabinogalactan protein 5 arabinogalactan protein 5 0.51 0.32 -0.3
103 AT1G59670 glutathione S-transferase TAU 15 glutathione S-transferase TAU 15,
glutathione S-transferase TAU 15		 0.51 0.32 -0.29
104 AT5G09940 Protein of unknown function (DUF1635) 0.51 0.32 -0.29
105 AT5G63900 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.51 0.33 -0.33
106 AT3G30260 AGAMOUS-like 79 AGAMOUS-like 79 0.51 0.32 -0.3
107 AT2G11235 transposable element gene 0.51 0.31 -0.29
108 AT1G51000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51020.1); Has 19 Blast hits
to 16 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.51 0.31 -0.32
109 AT2G05610 transposable element gene 0.51 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
110 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.61 0.44 -0.44 C0073