AT5G50280 : embryo defective 1006
Query Information
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AGICode AT5G50280
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G50280 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1006 1 0.32 -0.31
2 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.89 0.31 -0.3
3 AT4G34830 Pentatricopeptide repeat (PPR) superfamily protein MATURATION OF RBCL 1, PIGMENT
DEFECTIVE 346		 0.88 0.32 -0.32
4 AT3G28040 Leucine-rich receptor-like protein kinase family protein 0.88 0.33 -0.33
5 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.88 0.32 -0.3
6 AT3G14330 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.33 -0.31
7 AT4G34290 SWIB/MDM2 domain superfamily protein 0.87 0.31 -0.32
8 AT4G24670 tryptophan aminotransferase related 2 tryptophan aminotransferase
related 2		 0.87 0.33 -0.32
9 AT3G21300 RNA methyltransferase family protein 0.87 0.33 -0.32
10 AT5G66520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.31 -0.29
11 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.87 0.31 -0.32
12 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.87 0.33 -0.31
13 AT2G35155 Trypsin family protein 0.87 0.32 -0.32
14 AT2G14880 SWIB/MDM2 domain superfamily protein 0.87 0.3 -0.31
15 AT1G10522 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.86 0.29 -0.32
16 AT3G18680 Amino acid kinase family protein 0.86 0.33 -0.31
17 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.86 0.32 -0.31
18 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.86 0.32 -0.32
19 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.86 0.3 -0.31
20 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.85 0.33 -0.31
21 AT3G45010 serine carboxypeptidase-like 48 serine carboxypeptidase-like 48 -0.85 0.31 -0.3
22 AT2G30140 UDP-Glycosyltransferase superfamily protein -0.85 0.34 -0.33
23 AT2G41990 CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant
protein, group 2 (InterPro:IPR004864); BEST Arabidopsis
thaliana protein match is: Late embryogenesis abundant
(LEA) hydroxyproline-rich glycoprotein family
(TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.85 0.33 -0.3
24 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.85 0.31 -0.32
25 AT5G57170 Tautomerase/MIF superfamily protein 0.85 0.31 -0.3
26 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.85 0.29 -0.32
27 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.85 0.31 -0.31
28 AT3G06770 Pectin lyase-like superfamily protein 0.85 0.31 -0.32
29 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.85 0.31 -0.31
30 AT2G17972 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 14 growth stages;
Has 34 Blast hits to 34 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.34 -0.31
31 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.85 0.3 -0.31
32 AT4G25990 CCT motif family protein CIL 0.85 0.33 -0.3
33 AT5G40150 Peroxidase superfamily protein 0.85 0.31 -0.32
34 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.85 0.31 -0.32
35 AT2G21385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.85 0.29 -0.31
36 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.84 0.28 -0.33
37 AT5G20630 germin 3 ARABIDOPSIS THALIANA GERMIN 3,
germin 3, GERMIN-LIKE PROTEIN 3,
GLP3A, GLP3B		 0.84 0.34 -0.3
38 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.84 0.33 -0.32
39 AT2G18940 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.29 -0.33
40 AT5G16030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.83 0.32 -0.31
41 AT1G14840 microtubule-associated proteins 70-4 microtubule-associated proteins
70-4, microtubule-associated
proteins 70-4		 0.83 0.31 -0.32
42 AT4G34220 Leucine-rich repeat protein kinase family protein 0.83 0.32 -0.31
43 AT2G37770 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C9, Chloroplastic aldo-keto
reductase		 -0.83 0.31 -0.32
44 AT3G22150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.31 -0.32
45 AT5G64380 Inositol monophosphatase family protein 0.83 0.32 -0.3
46 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.83 0.33 -0.31
47 AT3G13560 O-Glycosyl hydrolases family 17 protein 0.83 0.31 -0.32
48 AT4G22530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.82 0.28 -0.32
49 AT3G62390 TRICHOME BIREFRINGENCE-LIKE 6 TRICHOME BIREFRINGENCE-LIKE 6 0.82 0.32 -0.34
50 AT4G26060 Ribosomal protein L18ae family -0.82 0.34 -0.31
51 AT5G13140 Pollen Ole e 1 allergen and extensin family protein 0.82 0.33 -0.34
52 AT3G61780 embryo defective 1703 embryo defective 1703 0.82 0.32 -0.31
53 AT2G37390 Chloroplast-targeted copper chaperone protein SODIUM POTASSIUM ROOT DEFECTIVE 2 0.82 0.32 -0.31
54 AT5G58480 O-Glycosyl hydrolases family 17 protein 0.82 0.31 -0.3
55 AT1G63840 RING/U-box superfamily protein -0.82 0.3 -0.34
56 AT5G57180 chloroplast import apparatus 2 chloroplast import apparatus 2 0.82 0.31 -0.34
57 AT1G72680 cinnamyl-alcohol dehydrogenase CINNAMYL ALCOHOL DEHYDROGENASE 1,
cinnamyl-alcohol dehydrogenase		 -0.81 0.32 -0.3
58 AT1G53580 glyoxalase II 3 ETHE1-LIKE, GLYOXALASE 2-3,
glyoxalase II 3		 -0.81 0.3 -0.32
59 AT3G24170 glutathione-disulfide reductase glutathione-disulfide reductase,
glutathione-disulfide reductase		 -0.81 0.32 -0.31
60 AT2G29990 alternative NAD(P)H dehydrogenase 2 alternative NAD(P)H dehydrogenase
2		 -0.81 0.31 -0.32
61 AT4G21580 oxidoreductase, zinc-binding dehydrogenase family protein -0.81 0.32 -0.3
62 AT1G54340 isocitrate dehydrogenase isocitrate dehydrogenase -0.81 0.32 -0.32
63 AT4G15490 UDP-Glycosyltransferase superfamily protein UGT84A3 -0.81 0.31 -0.3
64 AT3G07700 Protein kinase superfamily protein -0.81 0.34 -0.3
65 AT2G37760 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C8		 -0.81 0.34 -0.33
66 AT2G02390 glutathione S-transferase zeta 1 glutathione S-transferase zeta 1,
GLUTATHIONE S-TRANSFERASE 18,
glutathione S-transferase zeta 1		 -0.8 0.3 -0.32
67 AT4G22920 non-yellowing 1 NON-YELLOWING 1, NON-YELLOWING 1 -0.8 0.31 -0.32
68 AT4G37370 cytochrome P450, family 81, subfamily D, polypeptide 8 cytochrome P450, family 81,
subfamily D, polypeptide 8		 -0.8 0.31 -0.33
69 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.8 0.32 -0.3
70 AT2G47800 multidrug resistance-associated protein 4 ATP-binding cassette C4, multidrug
resistance-associated protein 4,
EST3, multidrug
resistance-associated protein 4		 -0.8 0.33 -0.3
71 AT1G13990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3110 (InterPro:IPR021503);
Has 25 Blast hits to 25 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.8 0.33 -0.3
72 AT1G66760 MATE efflux family protein -0.8 0.31 -0.3
73 AT1G02850 beta glucosidase 11 beta glucosidase 11 -0.79 0.32 -0.32
74 AT1G50570 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.79 0.31 -0.32
75 AT3G53780 RHOMBOID-like protein 4 RHOMBOID-like protein 4,
RHOMBOID-like protein 4		 -0.79 0.31 -0.33
76 AT5G03490 UDP-Glycosyltransferase superfamily protein -0.79 0.32 -0.31
77 AT2G41380 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.79 0.3 -0.32
78 AT5G61820 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: vacuole; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod
19 (InterPro:IPR011692); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.79 0.31 -0.29
79 AT4G31860 Protein phosphatase 2C family protein -0.79 0.33 -0.32
80 AT2G33590 NAD(P)-binding Rossmann-fold superfamily protein -0.78 0.32 -0.33
81 AT5G05110 Cystatin/monellin family protein -0.78 0.31 -0.31
82 AT5G65870 phytosulfokine 5 precursor phytosulfokine 5 precursor, PSK5,
phytosulfokine 5 precursor		 -0.78 0.3 -0.32
83 AT3G03640 beta glucosidase 25 beta glucosidase 25, GLUC -0.78 0.29 -0.31
84 AT4G33780 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40
Blast hits to 40 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.78 0.32 -0.32
85 AT2G37150 RING/U-box superfamily protein -0.78 0.33 -0.32
86 AT5G06750 Protein phosphatase 2C family protein -0.78 0.33 -0.34
87 AT5G10730 NAD(P)-binding Rossmann-fold superfamily protein -0.78 0.32 -0.32
88 AT5G42050 DCD (Development and Cell Death) domain protein -0.77 0.31 -0.34
89 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.77 0.31 -0.32
90 AT5G63450 cytochrome P450, family 94, subfamily B, polypeptide 1 cytochrome P450, family 94,
subfamily B, polypeptide 1		 -0.77 0.3 -0.31
91 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.77 0.34 -0.32
92 AT1G35190 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.77 0.34 -0.32
93 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.77 0.31 -0.32
94 AT2G37970 SOUL heme-binding family protein SOUL-1 -0.76 0.32 -0.31
95 AT2G26230 uricase / urate oxidase / nodulin 35, putative -0.76 0.3 -0.3
96 AT3G15180 ARM repeat superfamily protein -0.76 0.32 -0.3
97 AT5G56150 ubiquitin-conjugating enzyme 30 ubiquitin-conjugating enzyme 30 -0.76 0.31 -0.31
98 AT1G74020 strictosidine synthase 2 strictosidine synthase 2 -0.76 0.31 -0.32
99 AT1G60730 NAD(P)-linked oxidoreductase superfamily protein -0.76 0.31 -0.3
100 AT3G25010 receptor like protein 41 receptor like protein 41, receptor
like protein 41		 -0.75 0.33 -0.31
101 AT5G18200 UTP:galactose-1-phosphate
uridylyltransferases;ribose-5-phosphate
adenylyltransferases		 -0.75 0.3 -0.33
102 AT4G34230 cinnamyl alcohol dehydrogenase 5 cinnamyl alcohol dehydrogenase 5,
cinnamyl alcohol dehydrogenase 5,
cinnamyl alcohol dehydrogenase 5		 -0.75 0.35 -0.31
103 AT5G22860 Serine carboxypeptidase S28 family protein -0.75 0.31 -0.33
104 AT3G59140 multidrug resistance-associated protein 14 ATP-binding cassette C10,
multidrug resistance-associated
protein 14, multidrug
resistance-associated protein 14		 -0.75 0.3 -0.32
105 AT1G68300 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.75 0.32 -0.3
106 AT1G77920 bZIP transcription factor family protein -0.74 0.3 -0.31
107 AT4G19230 cytochrome P450, family 707, subfamily A, polypeptide 1 cytochrome P450, family 707,
subfamily A, polypeptide 1		 -0.74 0.33 -0.32
108 AT4G09030 arabinogalactan protein 10 arabinogalactan protein 10,
ATAGP10		 -0.74 0.33 -0.32
109 AT5G63790 NAC domain containing protein 102 NAC domain containing protein 102,
NAC domain containing protein 102		 -0.74 0.33 -0.3
110 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5		 -0.74 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
111 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.78 0.46 -0.45 C0120