AT5G50250 : chloroplast RNA-binding protein 31B
Query Information
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AGICode AT5G50250
Description chloroplast RNA-binding protein 31B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G50250 chloroplast RNA-binding protein 31B chloroplast RNA-binding protein
31B		 1 0.29 -0.3
2 AT1G03475 Coproporphyrinogen III oxidase ATCPO-I, HEMF1, LESION INITIATION
2		 0.91 0.32 -0.31
3 AT5G55710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Uncharacterised
conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 translocon at the inner envelope
membrane of chloroplasts 20-V,
translocon at the inner envelope
membrane of chloroplasts 20-V		 0.89 0.35 -0.33
4 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.89 0.33 -0.31
5 AT2G33450 Ribosomal L28 family 0.89 0.3 -0.31
6 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.89 0.32 -0.32
7 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.88 0.32 -0.32
8 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.88 0.29 -0.34
9 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.88 0.32 -0.3
10 AT4G35450 ankyrin repeat-containing protein 2 AFT, ankyrin repeat-containing
protein 2, AKR2A		 0.87 0.3 -0.32
11 AT2G22230 Thioesterase superfamily protein 0.87 0.32 -0.31
12 AT3G15110 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3082
(InterPro:IPR021434); Has 77 Blast hits to 77 proteins in
38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi -
0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.87 0.32 -0.32
13 AT4G37510 Ribonuclease III family protein 0.87 0.32 -0.34
14 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.87 0.33 -0.31
15 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.87 0.33 -0.32
16 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.86 0.29 -0.32
17 AT5G07020 proline-rich family protein 0.86 0.31 -0.3
18 AT4G28210 embryo defective 1923 embryo defective 1923 0.86 0.32 -0.31
19 AT3G24590 plastidic type i signal peptidase 1 plastidic type i signal peptidase
1		 0.86 0.32 -0.34
20 AT2G45770 signal recognition particle receptor protein, chloroplast
(FTSY)		 CPFTSY, FERRIC CHELATE REDUCTASE
DEFECTIVE 4		 0.86 0.33 -0.3
21 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.86 0.31 -0.32
22 AT4G00180 Plant-specific transcription factor YABBY family protein YABBY3 0.85 0.3 -0.31
23 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.85 0.31 -0.32
24 AT3G46100 Histidyl-tRNA synthetase 1 Histidyl-tRNA synthetase 1,
Histidyl-tRNA synthetase 1		 0.85 0.31 -0.3
25 AT3G02660 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial EMBRYO DEFECTIVE 2768 0.85 0.32 -0.3
26 AT3G52960 Thioredoxin superfamily protein 0.85 0.31 -0.32
27 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.85 0.3 -0.31
28 AT3G15690 Single hybrid motif superfamily protein 0.84 0.31 -0.32
29 AT2G26550 heme oxygenase 2 heme oxygenase 2 0.84 0.31 -0.32
30 AT4G01690 Flavin containing amine oxidoreductase family HEMG1, PPO1, PPOX 0.84 0.32 -0.35
31 AT5G52520 Class II aaRS and biotin synthetases superfamily protein OVULE ABORTION 6, PROLYL-TRNA
SYNTHETASE 1		 0.84 0.3 -0.29
32 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.84 0.32 -0.32
33 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.84 0.33 -0.3
34 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.84 0.32 -0.29
35 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.83 0.32 -0.31
36 AT4G01310 Ribosomal L5P family protein 0.83 0.31 -0.33
37 AT3G07670 Rubisco methyltransferase family protein 0.83 0.29 -0.31
38 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 0.83 0.32 -0.32
39 AT5G17840 DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.83 0.32 -0.32
40 AT1G31160 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING
2		 0.83 0.31 -0.3
41 AT3G57990 unknown protein; Has 1497 Blast hits to 1323 proteins in 52
species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi -
34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375
(source: NCBI BLink).		 0.82 0.3 -0.32
42 AT2G24020 Uncharacterised BCR, YbaB family COG0718 0.81 0.3 -0.31
43 AT2G38270 CAX-interacting protein 2 GLUTAREDOXIN, CAX-interacting
protein 2		 0.81 0.32 -0.3
44 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.81 0.34 -0.32
45 AT4G38225 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.81 0.32 -0.31
46 AT1G69740 Aldolase superfamily protein HEMB1 0.81 0.31 -0.33
47 AT2G21280 NAD(P)-binding Rossmann-fold superfamily protein ATSULA, GIANT CHLOROPLAST 1, SULA 0.81 0.3 -0.3
48 AT2G03780 Translin family protein 0.8 0.32 -0.31
49 AT2G26900 Sodium Bile acid symporter family bile acid:sodium symporter family
protein 2		 0.8 0.31 -0.31
50 AT2G46870 AP2/B3-like transcriptional factor family protein NGATHA1 0.8 0.33 -0.32
51 AT3G25530 glyoxylate reductase 1 ATGHBDH, GHBDH, glyoxylate
reductase 1, GLYOXYLATE REDUCTASE
1		 0.8 0.32 -0.33
52 AT4G33680 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 ABERRANT GROWTH AND DEATH 2 0.8 0.31 -0.31
53 AT4G32900 Peptidyl-tRNA hydrolase II (PTH2) family protein 0.8 0.31 -0.3
54 AT5G63930 Leucine-rich repeat protein kinase family protein -0.79 0.33 -0.31
55 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.77 0.32 -0.32
56 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.76 0.32 -0.31
57 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.75 0.31 -0.32
58 AT4G34600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane
system; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: M germinated pollen stage, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.75 0.31 -0.32
59 AT1G10050 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein		 -0.75 0.31 -0.33
60 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.74 0.31 -0.33
61 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.74 0.31 -0.3
62 AT2G39110 Protein kinase superfamily protein -0.72 0.31 -0.33
63 AT3G52830 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is: Ankyrin
repeat family protein (TAIR:AT5G54700.1); Has 6 Blast hits
to 6 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.72 0.32 -0.3
64 AT1G33750 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.72 0.32 -0.29
65 AT5G13010 RNA helicase family protein embryo defective 3011 -0.71 0.31 -0.31
66 AT5G48940 Leucine-rich repeat transmembrane protein kinase family
protein		 -0.71 0.33 -0.31
67 AT4G12080 AT-hook motif nuclear-localized protein 1 AT-hook motif nuclear-localized
protein 1, ATAHL1		 -0.71 0.31 -0.29
68 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.71 0.31 -0.33
69 AT3G19200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits
to 51 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.32 -0.34
70 AT1G69526 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.32 -0.29
71 AT4G37295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stem, root, leaf;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.71 0.28 -0.3
72 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.7 0.29 -0.33
73 AT1G22440 Zinc-binding alcohol dehydrogenase family protein -0.7 0.34 -0.33
74 AT5G49880 mitotic checkpoint family protein -0.7 0.35 -0.3
75 AT1G23850 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23840.1); Has 47 Blast hits
to 40 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.69 0.3 -0.31
76 AT4G22610 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.69 0.29 -0.32
77 AT5G19520 mechanosensitive channel of small conductance-like 9 ATMSL9, mechanosensitive channel
of small conductance-like 9		 -0.69 0.31 -0.31
78 AT3G49810 ARM repeat superfamily protein -0.69 0.31 -0.32
79 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.69 0.31 -0.32
80 AT5G24600 Protein of unknown function, DUF599 -0.69 0.31 -0.3
81 AT1G30760 FAD-binding Berberine family protein -0.68 0.32 -0.34
82 AT3G27473 Cysteine/Histidine-rich C1 domain family protein -0.67 0.3 -0.32
83 AT4G15270 glucosyltransferase-related -0.67 0.31 -0.3
84 AT4G13235 embryo sac development arrest 21 embryo sac development arrest 21 -0.67 0.29 -0.31
85 AT5G53990 UDP-Glycosyltransferase superfamily protein -0.67 0.34 -0.3
86 AT1G23560 Domain of unknown function (DUF220) -0.66 0.31 -0.33
87 AT2G30840 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.66 0.31 -0.32
88 AT5G53800 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.66 0.33 -0.32
89 AT1G09380 nodulin MtN21 /EamA-like transporter family protein -0.66 0.32 -0.3
90 AT1G53180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4;
Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink).		 -0.66 0.31 -0.34
91 AT4G09940 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.66 0.31 -0.31
92 AT2G41070 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP12, DPBF4, ENHANCED EM LEVEL -0.66 0.31 -0.31
93 AT2G45290 Transketolase -0.66 0.31 -0.31
94 AT2G35980 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 ARABIDOPSIS NDR1/HIN1-LIKE 10,
NDR1/HIN1-LIKE,
YELLOW-LEAF-SPECIFIC GENE 9		 -0.65 0.31 -0.33
95 AT5G14180 Myzus persicae-induced lipase 1 Myzus persicae-induced lipase 1 -0.65 0.33 -0.31
96 AT4G14980 Cysteine/Histidine-rich C1 domain family protein -0.65 0.3 -0.33
97 AT5G59530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.33 -0.31
98 AT3G09750 Galactose oxidase/kelch repeat superfamily protein -0.65 0.33 -0.31
99 AT1G59740 Major facilitator superfamily protein -0.64 0.32 -0.31
100 AT5G65170 VQ motif-containing protein -0.64 0.3 -0.31
101 AT5G61060 histone deacetylase 5 ATHDA5, histone deacetylase 5,
HDA5		 -0.64 0.32 -0.32
102 AT1G05577 Domain of unknown function (DUF966) -0.64 0.34 -0.35
103 AT5G47750 D6 protein kinase like 2 D6 protein kinase like 2, PK5 -0.64 0.31 -0.31
104 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 -0.64 0.32 -0.32
105 AT1G32120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane; EXPRESSED
IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like,
plant mobile domain (InterPro:IPR019557), Protein of
unknown function DUF716 (InterPro:IPR006904); BEST
Arabidopsis thaliana protein match is:
Aminotransferase-like, plant mobile domain family protein
(TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins
in 576 species: Archae - 4; Bacteria - 1182; Metazoa -
7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other
Eukaryotes - 4469 (source: NCBI BLink).		 -0.64 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
106 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.76 0.43 -0.46 C0051