AT5G48150 : phytochrome a signal transduction 1
Query Information
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AGICode AT5G48150
Description GRAS family transcription factor
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G48150 GRAS family transcription factor phytochrome a signal transduction
1		 1 0.31 -0.31
2 AT3G14595 Ribosomal protein L18ae family 0.84 0.31 -0.31
3 AT5G22500 fatty acid reductase 1 fatty acid reductase 1 0.78 0.29 -0.32
4 AT3G09020 alpha 1,4-glycosyltransferase family protein -0.76 0.34 -0.32
5 AT5G49990 Xanthine/uracil permease family protein 0.75 0.34 -0.31
6 AT5G16630 DNA repair protein Rad4 family ATRAD4, RAD4 0.75 0.28 -0.31
7 AT5G06740 Concanavalin A-like lectin protein kinase family protein -0.75 0.32 -0.3
8 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 0.74 0.34 -0.33
9 AT3G52450 plant U-box 22 plant U-box 22 -0.74 0.31 -0.31
10 AT4G16160 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-2, ATOEP16-S 0.74 0.34 -0.32
11 AT5G48500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.74 0.3 -0.33
12 AT1G69260 ABI five binding protein ABI five binding protein 0.73 0.29 -0.31
13 AT3G48510 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits
to 98 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.72 0.33 -0.31
14 AT1G04310 ethylene response sensor 2 ethylene response sensor 2 0.72 0.32 -0.33
15 AT5G62330 BEST Arabidopsis thaliana protein match is: Plant
invertase/pectin methylesterase inhibitor superfamily
protein (TAIR:AT5G62340.1); Has 9 Blast hits to 9 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.7 0.31 -0.34
16 AT5G06080 LOB domain-containing protein 33 LOB domain-containing protein 33 0.7 0.3 -0.33
17 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 0.7 0.3 -0.32
18 AT2G26690 Major facilitator superfamily protein 0.7 0.32 -0.34
19 AT2G41280 late embryogenesis abundant protein (M10) / LEA protein M10 ATM10, M10 0.7 0.33 -0.33
20 AT4G17030 expansin-like B1 AT-EXPR, expansin-like B1,
ATEXPR1, ATHEXP BETA 3.1,
expansin-like B1, EXPR		 0.7 0.32 -0.33
21 AT4G25140 oleosin 1 OLEOSIN 1, oleosin 1 0.69 0.32 -0.32
22 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein 0.69 0.31 -0.31
23 AT1G67110 cytochrome P450, family 735, subfamily A, polypeptide 2 cytochrome P450, family 735,
subfamily A, polypeptide 2		 -0.69 0.3 -0.3
24 AT5G51210 oleosin3 oleosin3 0.69 0.3 -0.3
25 AT4G29740 cytokinin oxidase 4 ATCKX4, cytokinin oxidase 4 -0.68 0.31 -0.32
26 AT5G56260 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 -0.68 0.3 -0.3
27 AT1G76990 ACT domain repeat 3 ACT domain repeat 3 -0.68 0.29 -0.34
28 AT3G63520 carotenoid cleavage dioxygenase 1 CAROTENOID CLEAVAGE DIOXYGENASE 1,
ATNCED1, carotenoid cleavage
dioxygenase 1, NCED1		 0.68 0.33 -0.3
29 AT4G38350 Patched family protein 0.68 0.31 -0.31
30 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.68 0.32 -0.32
31 AT4G20780 calmodulin like 42 calmodulin like 42 -0.67 0.3 -0.33
32 AT1G22690 Gibberellin-regulated family protein -0.67 0.31 -0.3
33 AT3G16530 Legume lectin family protein -0.67 0.3 -0.32
34 AT1G79400 cation/H+ exchanger 2 cation/H+ exchanger 2, cation/H+
exchanger 2		 -0.67 0.33 -0.31
35 AT1G31750 proline-rich family protein 0.67 0.33 -0.32
36 AT2G46800 zinc transporter of Arabidopsis thaliana A. THALIANA CATION DIFFUSION
FACILITATOR 1, ATMTP1, MTP1, zinc
transporter of Arabidopsis
thaliana, ZINC TRANSPORTER OF
ARABIDOPSIS THALIANA 1		 0.67 0.33 -0.29
37 AT1G63120 RHOMBOID-like 2 RHOMBOID-like 2, RHOMBOID-like 2 0.67 0.32 -0.32
38 AT1G05570 callose synthase 1 ATGSL06, ATGSL6, callose synthase
1, GSL06, GLUCAN SYNTHASE-LIKE 6		 -0.67 0.31 -0.33
39 AT1G04830 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.67 0.32 -0.33
40 AT3G01570 Oleosin family protein 0.67 0.3 -0.3
41 AT1G08930 Major facilitator superfamily protein EARLY RESPONSE TO DEHYDRATION 6 -0.66 0.31 -0.32
42 AT2G11140 transposable element gene -0.66 0.32 -0.33
43 AT1G69295 plasmodesmata callose-binding protein 4 plasmodesmata callose-binding
protein 4		 0.66 0.31 -0.32
44 AT2G41540 6-phosphogluconate dehydrogenase family protein GPDHC1 0.66 0.3 -0.29
45 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.66 0.31 -0.31
46 AT3G13340 Transducin/WD40 repeat-like superfamily protein 0.66 0.31 -0.33
47 AT4G14270 Protein containing PAM2 motif which mediates interaction
with the PABC domain of polyadenyl binding proteins.		 0.66 0.31 -0.31
48 AT2G26020 plant defensin 1.2b plant defensin 1.2b -0.65 0.31 -0.33
49 AT3G47600 myb domain protein 94 myb domain protein 94, ATMYBCP70,
myb domain protein 94		 0.65 0.31 -0.32
50 AT1G71250 GDSL-like Lipase/Acylhydrolase superfamily protein -0.65 0.32 -0.32
51 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.65 0.32 -0.34
52 AT2G27660 Cysteine/Histidine-rich C1 domain family protein -0.65 0.3 -0.32
53 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.65 0.31 -0.31
54 AT1G62960 ACC synthase 10 ACC synthase 10 -0.64 0.32 -0.3
55 AT4G37220 Cold acclimation protein WCOR413 family 0.64 0.3 -0.29
56 AT3G50980 dehydrin xero 1 dehydrin xero 1 0.64 0.33 -0.31
57 AT2G26400 acireductone dioxygenase 3 ACIREDUCTONE DIOXYGENASE,
acireductone dioxygenase 3,
acireductone dioxygenase 3		 -0.64 0.3 -0.31
58 AT4G35190 Putative lysine decarboxylase family protein LONELY GUY 5 0.64 0.3 -0.34
59 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.64 0.32 -0.29
60 AT5G48290 Heavy metal transport/detoxification superfamily protein -0.64 0.3 -0.32
61 AT1G55510 branched-chain alpha-keto acid decarboxylase E1 beta
subunit		 branched-chain alpha-keto acid
decarboxylase E1 beta subunit		 0.63 0.33 -0.32
62 AT4G30830 Protein of unknown function, DUF593 0.63 0.32 -0.3
63 AT1G68490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.31 -0.32
64 AT3G53040 late embryogenesis abundant protein, putative / LEA
protein, putative		 0.63 0.31 -0.31
65 AT3G53540 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana
protein match is: Protein of unknown function (DUF3741)
(TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in
206 species: Archae - 2; Bacteria - 409; Metazoa - 304;
Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes -
485 (source: NCBI BLink).		 0.63 0.32 -0.32
66 AT3G01310 Phosphoglycerate mutase-like family protein 0.63 0.33 -0.31
67 AT3G57330 autoinhibited Ca2+-ATPase 11 autoinhibited Ca2+-ATPase 11 -0.63 0.31 -0.3
68 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase -0.63 0.35 -0.31
69 AT5G66780 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.3 -0.29
70 AT2G31710 Vacuolar ATPase assembly integral membrane protein
VMA21-like domain		 -0.62 0.34 -0.32
71 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 0.62 0.33 -0.31
72 AT1G65920 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.62 0.31 -0.34
73 AT3G51750 unknown protein; Has 15 Blast hits to 14 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.31 -0.32
74 AT5G42970 Proteasome component (PCI) domain protein ATS4, CONSTITUTIVE
PHOTOMORPHOGENIC 14, CONSTITUTIVE
PHOTOMORPHOGENIC 8, COP9
SIGNALOSOME SUBUNIT 4, EMBRYO
DEFECTIVE 134, FUSCA 4, FUSCA 8		 -0.62 0.31 -0.32
75 AT4G16442 Uncharacterised protein family (UPF0497) 0.62 0.29 -0.32
76 AT5G61160 anthocyanin 5-aromatic acyltransferase 1 anthocyanin 5-aromatic
acyltransferase 1		 -0.62 0.31 -0.31
77 AT1G56580 Protein of unknown function, DUF538 SMALLER WITH VARIABLE BRANCHES 0.62 0.32 -0.34
78 AT5G30490 CONTAINS InterPro DOMAIN/s: Craniofacial development
protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast
hits to 324 proteins in 149 species: Archae - 0; Bacteria -
18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0;
Other Eukaryotes - 53 (source: NCBI BLink).		 -0.62 0.31 -0.34
79 AT3G50740 UDP-glucosyl transferase 72E1 UDP-glucosyl transferase 72E1 -0.62 0.31 -0.29
80 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.62 0.33 -0.3
81 AT1G25530 Transmembrane amino acid transporter family protein 0.61 0.31 -0.32
82 AT1G14960 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.61 0.32 -0.31
83 AT5G60680 Protein of unknown function, DUF584 0.61 0.3 -0.3
84 AT2G28980 transposable element gene -0.61 0.34 -0.29
85 AT1G68150 WRKY DNA-binding protein 9 ATWRKY9, WRKY DNA-binding protein
9		 -0.61 0.31 -0.31
86 AT3G20430 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA
export protein, RNA-binding domain (InterPro:IPR019385);
Has 110 Blast hits to 110 proteins in 51 species: Archae -
0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36;
Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).		 -0.61 0.3 -0.32
87 AT4G16750 Integrase-type DNA-binding superfamily protein 0.61 0.3 -0.31
88 AT4G24830 arginosuccinate synthase family -0.61 0.33 -0.31
89 AT5G50260 Cysteine proteinases superfamily protein cysteine endopeptidase 1 0.61 0.32 -0.31
90 AT3G22440 FRIGIDA-like protein 0.61 0.31 -0.32
91 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 0.61 0.32 -0.31
92 AT1G51790 Leucine-rich repeat protein kinase family protein -0.61 0.32 -0.33
93 AT3G26310 cytochrome P450, family 71, subfamily B, polypeptide 35 cytochrome P450, family 71,
subfamily B, polypeptide 35		 0.61 0.33 -0.31
94 AT1G04600 myosin XI A ATXIA, myosin XI A -0.61 0.31 -0.31
95 AT1G22640 myb domain protein 3 ARABIDOPSIS THALIANA MYB DOMAIN
PROTEIN 3, myb domain protein 3		 0.61 0.36 -0.32
96 AT1G54330 NAC domain containing protein 20 NAC domain containing protein 20,
NAC domain containing protein 20		 -0.6 0.31 -0.3
97 AT1G57570 Mannose-binding lectin superfamily protein -0.6 0.32 -0.31
98 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.6 0.32 -0.33
99 AT2G13810 AGD2-like defense response protein 1 AGD2-like defense response protein
1, eds two suppressor 5		 -0.6 0.33 -0.31
100 AT1G78460 SOUL heme-binding family protein -0.6 0.33 -0.31
101 AT5G41180 leucine-rich repeat transmembrane protein kinase family
protein		 -0.6 0.29 -0.31
102 AT1G15340 methyl-CPG-binding domain 10 methyl-CPG-binding domain 10 0.6 0.32 -0.32
103 AT1G66830 Leucine-rich repeat protein kinase family protein 0.6 0.33 -0.32
104 AT5G57450 homolog of X-ray repair cross complementing 3 (XRCC3) ARABIDOPSIS THALIANA HOMOLOG OF
X-RAY REPAIR CROSS COMPLEMENTING 3
(XRCC3), homolog of X-ray repair
cross complementing 3 (XRCC3)		 -0.6 0.31 -0.32
105 AT1G06160 octadecanoid-responsive Arabidopsis AP2/ERF 59 octadecanoid-responsive
Arabidopsis AP2/ERF 59		 -0.6 0.34 -0.31
106 AT4G21650 Subtilase family protein 0.6 0.33 -0.33
107 AT2G45120 C2H2-like zinc finger protein -0.6 0.28 -0.32
108 AT4G02690 Bax inhibitor-1 family protein 0.6 0.31 -0.32
109 AT1G37537 transposable element gene -0.6 0.31 -0.32
110 AT5G19240 Glycoprotein membrane precursor GPI-anchored -0.6 0.33 -0.32
111 AT1G71980 Protease-associated (PA) RING/U-box zinc finger family
protein		 0.59 0.33 -0.3
112 AT4G37970 cinnamyl alcohol dehydrogenase 6 ATCAD6, cinnamyl alcohol
dehydrogenase 6		 0.59 0.31 -0.32
113 AT2G28330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.59 0.31 -0.33
114 AT4G12700 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits
to 136 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 0.59 0.33 -0.31
115 AT2G25080 glutathione peroxidase 1 GLUTATHIONE PEROXIDASE 1,
glutathione peroxidase 1		 0.59 0.34 -0.32
116 AT3G12890 activator of spomin::LUC2 activator of spomin::LUC2 -0.59 0.31 -0.33
117 AT1G51660 mitogen-activated protein kinase kinase 4 ARABIDOPSIS THALIANA
MITOGEN-ACTIVATED PROTEIN KINASE
KINASE 4, ARABIDOPSIS THALIANA
MITOGEN-ACTIVATED PROTEIN KINASE
KINASE 4, mitogen-activated
protein kinase kinase 4		 -0.59 0.31 -0.31
118 AT1G01520 Homeodomain-like superfamily protein ALTERED SEED GERMINATION 4 0.59 0.31 -0.33
119 AT3G05320 O-fucosyltransferase family protein -0.59 0.3 -0.32
120 AT1G70080 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.59 0.31 -0.31
121 AT1G19380 Protein of unknown function (DUF1195) -0.59 0.3 -0.32
122 AT1G15330 Cystathionine beta-synthase (CBS) protein 0.59 0.32 -0.33
123 AT1G33670 Leucine-rich repeat (LRR) family protein -0.59 0.31 -0.31
124 AT1G72100 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 0.59 0.32 -0.32
125 AT4G37050 PATATIN-like protein 4 phospholipase A IVC, PLA V,
patatin-related phospholipase III
beta, PATATIN-like protein 4		 0.59 0.32 -0.31
126 AT3G14310 pectin methylesterase 3 pectin methylesterase 3, pectin
methylesterase 3		 -0.59 0.3 -0.32
127 AT1G03850 Glutaredoxin family protein glutaredoxin 13, glutaredoxin 13 -0.59 0.3 -0.31
128 AT1G35320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G30160.1); Has 9 Blast hits to
9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.33 -0.31
129 AT1G64170 cation/H+ exchanger 16 cation/H+ exchanger 16, cation/H+
exchanger 16		 -0.58 0.32 -0.31
130 AT1G18140 laccase 1 ATLAC1, laccase 1 -0.57 0.32 -0.29
131 AT5G09380 RNA polymerase III RPC4 -0.57 0.31 -0.34
132 AT1G07000 exocyst subunit exo70 family protein B2 exocyst subunit exo70 family
protein B2, exocyst subunit exo70
family protein B2		 -0.57 0.29 -0.29
133 AT2G30990 Protein of unknown function (DUF688) -0.57 0.31 -0.31
134 AT1G51800 Leucine-rich repeat protein kinase family protein IMPAIRED OOMYCETE SUSCEPTIBILITY 1 -0.57 0.32 -0.31
135 AT5G67000 Integrase-type DNA-binding superfamily protein -0.57 0.3 -0.3
136 AT5G59410 Rab5-interacting family protein -0.57 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
137 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - -0.61 0.44 -0.46