AT5G47870 : radiation sensitive 51-2
Query Information
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AGICode AT5G47870
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G47870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 radiation sensitive 51-2, RAD52-2B 1 0.3 -0.32
2 AT2G38270 CAX-interacting protein 2 GLUTAREDOXIN, CAX-interacting
protein 2		 0.8 0.3 -0.32
3 AT5G03040 IQ-domain 2 IQ-domain 2 0.79 0.3 -0.33
4 AT1G11750 CLP protease proteolytic subunit 6 CLP protease proteolytic subunit
6, NUCLEAR-ENCODED CLPP 1, NCLPP6		 0.78 0.29 -0.3
5 AT3G10670 non-intrinsic ABC protein 7 ATP-binding cassette I6,
non-intrinsic ABC protein 7,
non-intrinsic ABC protein 7		 0.77 0.32 -0.29
6 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.76 0.3 -0.34
7 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.76 0.31 -0.31
8 AT5G64480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.76 0.31 -0.3
9 AT4G32590 2Fe-2S ferredoxin-like superfamily protein 0.75 0.32 -0.32
10 AT4G22310 Uncharacterised protein family (UPF0041) 0.75 0.3 -0.29
11 AT5G20060 alpha/beta-Hydrolases superfamily protein 0.74 0.33 -0.31
12 AT1G61780 postsynaptic protein-related 0.74 0.35 -0.31
13 AT2G44870 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 15 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
- 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.74 0.31 -0.28
14 AT4G33520 P-type ATP-ase 1 Arabidopsis thaliana heavy metal
ATPase 6, HEAVY METAL ATPASE 6,
P-type ATP-ase 1		 0.73 0.34 -0.34
15 AT3G20970 NFU domain protein 4 ARABIDOPSIS THALIANA NFU DOMAIN
PROTEIN 2, NFU domain protein 4		 0.73 0.3 -0.32
16 AT4G17300 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 ATNS1, NS1, ovule abortion 8 0.73 0.3 -0.32
17 AT1G22750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1475 (InterPro:IPR009943);
Has 185 Blast hits to 155 proteins in 21 species: Archae -
0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).		 0.72 0.32 -0.29
18 AT4G17040 CLP protease R subunit 4 CLP protease R subunit 4, happy on
norflurazon 5		 0.72 0.32 -0.31
19 AT1G36320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits
to 90 proteins in 22 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 0.72 0.32 -0.32
20 AT5G45390 CLP protease P4 CLP protease P4, NUCLEAR-ENCODED
CLP PROTEASE P4		 0.72 0.33 -0.3
21 AT2G20270 Thioredoxin superfamily protein 0.72 0.32 -0.33
22 AT3G18420 Protein prenylyltransferase superfamily protein 0.72 0.34 -0.32
23 AT3G24350 syntaxin of plants 32 ATSYP32, syntaxin of plants 32 0.72 0.31 -0.29
24 AT1G19320 Pathogenesis-related thaumatin superfamily protein 0.72 0.34 -0.3
25 AT2G37500 arginine biosynthesis protein ArgJ family 0.71 0.32 -0.33
26 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.29 -0.33
27 AT2G30105 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical
subtype (InterPro:IPR003591), Leucine-rich repeat
(InterPro:IPR001611), Ubiquitin (InterPro:IPR000626),
Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis
thaliana protein match is: Leucine-rich repeat (LRR) family
protein (TAIR:AT5G07910.1).		 0.7 0.33 -0.35
28 AT1G27385 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF493 (InterPro:IPR007454);
Has 76 Blast hits to 76 proteins in 23 species: Archae - 0;
Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.7 0.32 -0.3
29 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.7 0.34 -0.32
30 AT4G31990 aspartate aminotransferase 5 ASPARTATE AMINOTRANSFERASE
DEFICIENT 3, aspartate
aminotransferase 5, ATAAT1		 0.69 0.35 -0.32
31 AT5G48470 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.69 0.32 -0.32
32 AT4G35335 Nucleotide-sugar transporter family protein 0.69 0.31 -0.34
33 AT5G06580 FAD-linked oxidases family protein 0.69 0.33 -0.3
34 AT2G27600 AAA-type ATPase family protein ATSKD1, SUPPRESSOR OF K+ TRANSPORT
GROWTH DEFECT1, VACUOLAR PROTEIN
SORTING 4		 0.68 0.33 -0.29
35 AT5G63870 serine/threonine phosphatase 7 ATPP7, serine/threonine
phosphatase 7		 0.67 0.32 -0.31
36 AT3G61990 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 O-MTase family 3 protein -0.67 0.3 -0.31
37 AT5G10460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.67 0.32 -0.32
38 AT1G34780 APR-like 4 APR-like 4, APR-like 4 0.67 0.31 -0.32
39 AT2G21600 endoplasmatic reticulum retrieval protein 1B endoplasmatic reticulum retrieval
protein 1B, endoplasmatic
reticulum retrieval protein 1B		 0.67 0.32 -0.33
40 AT5G58240 FRAGILE HISTIDINE TRIAD FRAGILE HISTIDINE TRIAD 0.66 0.31 -0.31
41 AT4G12060 Double Clp-N motif protein 0.66 0.31 -0.34
42 AT1G11570 NTF2-like NTF2-like 0.66 0.33 -0.33
43 AT5G09290 Inositol monophosphatase family protein -0.66 0.3 -0.35
44 AT5G51700 protein binding;zinc ion binding ATRAR1, PPHB SUSCEPTIBLE 2,
Required for Mla12 resistance 1,
RPR2		 0.66 0.3 -0.31
45 AT3G57810 Cysteine proteinases superfamily protein 0.66 0.3 -0.31
46 AT2G30320 Pseudouridine synthase family protein 0.66 0.32 -0.31
47 AT5G42960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, plastid, chloroplast envelope;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.32 -0.31
48 AT1G79510 Uncharacterized conserved protein (DUF2358) 0.65 0.33 -0.31
49 AT3G55000 tonneau family protein TONNEAU 1, TONNEAU 1A 0.65 0.29 -0.32
50 AT1G10310 NAD(P)-binding Rossmann-fold superfamily protein 0.65 0.32 -0.3
51 AT2G05755 Nodulin MtN21 /EamA-like transporter family protein 0.65 0.31 -0.3
52 AT3G06110 MAPK phosphatase 2 ARABIDOPSIS MAPK PHOSPHATASE 2,
DUAL-SPECIFICITY PROTEIN
PHOSPHATASE 1B, MAPK phosphatase 2		 0.64 0.31 -0.33
53 AT5G11740 arabinogalactan protein 15 arabinogalactan protein 15,
ATAGP15		 0.64 0.34 -0.29
54 AT3G62090 phytochrome interacting factor 3-like 2 PHYTOCHROME-INTERACTING FACTOR 6,
phytochrome interacting factor
3-like 2		 -0.64 0.33 -0.31
55 AT2G38570 CONTAINS InterPro DOMAIN/s: PRC-barrel-like
(InterPro:IPR011033); Has 300 Blast hits to 300 proteins in
81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi
- 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128
(source: NCBI BLink).		 0.64 0.31 -0.33
56 AT2G31990 Exostosin family protein -0.64 0.3 -0.31
57 AT3G20570 early nodulin-like protein 9 AtENODL9, early nodulin-like
protein 9		 0.63 0.31 -0.31
58 AT1G51690 protein phosphatase 2A 55 kDa regulatory subunit B alpha
isoform		 protein phosphatase 2A 55 kDa
regulatory subunit B alpha
isoform, protein phosphatase 2A 55
kDa regulatory subunit B alpha
isoform		 0.63 0.32 -0.3
59 AT3G24250 glycine-rich protein 0.63 0.34 -0.32
60 AT5G51160 Ankyrin repeat family protein -0.62 0.35 -0.3
61 AT4G33130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: 6 growth stages; BEST Arabidopsis thaliana protein
match is: Protein of unknown function, DUF547
(TAIR:AT1G16750.1); Has 192 Blast hits to 192 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi -
0; Plants - 189; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.61 0.33 -0.3
62 AT4G22770 AT hook motif DNA-binding family protein -0.6 0.28 -0.33
63 AT5G55950 Nucleotide/sugar transporter family protein -0.6 0.31 -0.31
64 AT2G39370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits
to 178 proteins in 53 species: Archae - 0; Bacteria - 58;
Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 4		 -0.6 0.31 -0.31
65 AT4G32870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.59 0.32 -0.34
66 AT2G46940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits
to 141 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.34 -0.3
67 AT2G40900 nodulin MtN21 /EamA-like transporter family protein -0.58 0.32 -0.31
68 AT3G27473 Cysteine/Histidine-rich C1 domain family protein -0.58 0.3 -0.29
69 AT1G72850 Disease resistance protein (TIR-NBS class) -0.58 0.3 -0.33
70 AT1G34110 Leucine-rich receptor-like protein kinase family protein -0.58 0.31 -0.3
71 AT5G45200 Disease resistance protein (TIR-NBS-LRR class) family -0.58 0.34 -0.32
72 AT5G51680 hydroxyproline-rich glycoprotein family protein -0.57 0.31 -0.33
73 AT1G11420 DOMAIN OF UNKNOWN FUNCTION 724 2 DOMAIN OF UNKNOWN FUNCTION 724 2,
DOMAIN OF UNKNOWN FUNCTION 724 2		 -0.57 0.34 -0.32
74 AT3G20830 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 -0.57 0.31 -0.29
75 AT5G51670 Protein of unknown function (DUF668) -0.56 0.31 -0.31
76 AT3G50190 Plant protein of unknown function (DUF247) -0.56 0.31 -0.29
77 AT3G30800 transposable element gene -0.55 0.32 -0.32
78 AT4G13030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.55 0.31 -0.34
79 AT1G79330 metacaspase 5 AMC6, metacaspase 5, metacaspase
2b, metacaspase 5, metacaspase 2b		 -0.55 0.29 -0.32
80 AT4G38210 expansin A20 ATEXP20, expansin A20, ATHEXP
ALPHA 1.23, EXPANSIN 20, expansin
A20		 -0.54 0.33 -0.35
81 AT4G03340 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.54 0.33 -0.3
82 AT4G00720 shaggy-like protein kinase 32 SHAGGY-LIKE PROTEIN KINASE THETA,
shaggy-like protein kinase 32,
shaggy-like protein kinase 32		 -0.53 0.3 -0.32
83 AT5G07450 cyclin p4;3 cyclin p4;3 -0.53 0.28 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
84 C0035 4-Methoxyindol-3-ylmethylglucosinolate - 4-Methoxy-3-indolylmethyl glucosinolate glucosinolate biosynthesis from tryptophan,
indole glucosinolate breakdown (active in intact plant cell) 		-0.7 0.47 -0.45 C0035
85 C0230 Rutin - - polyphenol biosynthesis -0.69 0.46 -0.43
86 C0198 Phosphatidylethanolamine-34:0 - - - -0.68 0.48 -0.45