AT5G46840 : -
Query Information
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AGICode AT5G46840
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G46840 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.29 -0.32
2 AT2G36930 zinc finger (C2H2 type) family protein 0.8 0.32 -0.31
3 AT5G10510 AINTEGUMENTA-like 6 AINTEGUMENTA-like 6, PLETHORA 3 0.73 0.33 -0.33
4 AT2G37410 translocase inner membrane subunit 17-2 translocase inner membrane subunit
17-2, TRANSLOCASE OF THE INNER
MEMBRANE 17, translocase inner
membrane subunit 17-2		 0.72 0.28 -0.33
5 AT5G47680 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA
(guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA
(guanine-N(1)-)-methyltransferase, metazoa
(InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase,
eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 AtTRM, tRNA modification 10 0.72 0.31 -0.28
6 AT1G09770 cell division cycle 5 ARABIDOPSIS THALIANA CELL DIVISION
CYCLE 5, ARABIDOPSIS THALIANA MYB
DOMAIN CELL DIVISION CYCLE 5, cell
division cycle 5		 0.72 0.31 -0.32
7 AT4G38130 histone deacetylase 1 ARABIDOPSIS HISTONE DEACETYLASE 1,
ARABIDOPSIS HISTONE DEACETYLASE
19, histone deacetylase 1, HDA1,
HISTONE DEACETYLASE 19, RPD3A		 0.71 0.31 -0.34
8 AT5G12410 THUMP domain-containing protein 0.71 0.32 -0.3
9 AT1G02840 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34, ATSRP34, SR1,
Serine/Arginine-Rich Protein
Splicing Factor 34, SRP34		 0.71 0.32 -0.32
10 AT5G05640 nucleoprotein-related 0.7 0.32 -0.34
11 AT2G41500 WD-40 repeat family protein / small nuclear
ribonucleoprotein Prp4p-related		 EMB2776, LACHESIS 0.7 0.3 -0.31
12 AT3G50440 methyl esterase 10 ARABIDOPSIS THALIANA METHYL
ESTERASE 10, methyl esterase 10		 -0.69 0.33 -0.3
13 AT3G04570 AT-hook motif nuclear-localized protein 19 AT-hook motif nuclear-localized
protein 19		 0.69 0.32 -0.29
14 AT4G26950 Protein of unknown function, DUF584 -0.69 0.32 -0.31
15 AT2G36290 alpha/beta-Hydrolases superfamily protein 0.69 0.31 -0.33
16 AT4G37650 GRAS family transcription factor SHOOT GRAVITROPISM 7, SHORT ROOT 0.68 0.32 -0.3
17 AT4G36260 Lateral root primordium (LRP) protein-related SHI RELATED SEQUENCE 2, STYLISH 2 0.67 0.31 -0.28
18 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.67 0.31 -0.3
19 AT5G01870 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.66 0.33 -0.31
20 AT2G46630 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; Has
110095 Blast hits to 59224 proteins in 2216 species: Archae
- 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843;
Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876
(source: NCBI BLink).		 -0.66 0.32 -0.31
21 AT1G30880 unknown protein; Has 24 Blast hits to 24 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.33 -0.31
22 AT4G32910 CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein,
Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.66 0.32 -0.33
23 AT2G16570 GLN phosphoribosyl pyrophosphate amidotransferase 1 GLN phosphoribosyl pyrophosphate
amidotransferase 1, ATASE, GLN
phosphoribosyl pyrophosphate
amidotransferase 1		 0.66 0.31 -0.34
24 AT2G02850 plantacyanin plantacyanin 0.65 0.33 -0.31
25 AT2G02090 SNF2 domain-containing protein / helicase domain-containing
protein		 CHA19, CHROMATIN REMODELING 19,
ETL1		 0.65 0.34 -0.31
26 AT1G09280 CONTAINS InterPro DOMAIN/s: Rhodanese-like
(InterPro:IPR001763), Serine hydrolase
(InterPro:IPR005645); BEST Arabidopsis thaliana protein
match is: Rhodanese/Cell cycle control phosphatase
superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits
to 5912 proteins in 1592 species: Archae - 0; Bacteria -
2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses -
0; Other Eukaryotes - 2186 (source: NCBI BLink).		 0.65 0.33 -0.31
27 AT2G23030 SNF1-related protein kinase 2.9 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-9, SNF1-related
protein kinase 2.9		 0.65 0.31 -0.31
28 AT2G34900 Transcription factor GTE6 GTE01, GLOBAL TRANSCRIPTION FACTOR
GROUP E1, IMBIBITION-INDUCIBLE 1		 0.64 0.29 -0.3
29 AT3G49380 IQ-domain 15 IQ-domain 15 0.64 0.31 -0.33
30 AT5G63530 farnesylated protein 3 ARABIDOPSIS THALIANA FARNESYLATED
PROTEIN 3, farnesylated protein 3		 -0.64 0.31 -0.32
31 AT3G13460 evolutionarily conserved C-terminal region 2 evolutionarily conserved
C-terminal region 2		 0.64 0.28 -0.3
32 AT1G66980 suppressor of npr1-1 constitutive 4 Glycerophosphodiester
phosphodiesterase (GDPD) like 2,
suppressor of npr1-1 constitutive
4		 -0.64 0.3 -0.34
33 AT1G80100 histidine phosphotransfer protein 6 histidine phosphotransfer protein
6, histidine phosphotransfer
protein 6		 0.64 0.31 -0.32
34 AT1G75520 SHI-related sequence 5 SHI-related sequence 5 0.64 0.33 -0.29
35 AT5G62190 DEAD box RNA helicase (PRH75) PRH75 0.63 0.31 -0.32
36 AT3G13380 BRI1-like 3 BRI1-like 3 0.63 0.32 -0.31
37 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 0.63 0.33 -0.34
38 AT1G77990 STAS domain / Sulfate transporter family AST56, SULPHATE TRANSPORTER 2;2 -0.63 0.29 -0.29
39 AT1G34110 Leucine-rich receptor-like protein kinase family protein 0.63 0.28 -0.31
40 AT4G25760 glutamine dumper 2 glutamine dumper 2, glutamine
dumper 2		 -0.63 0.34 -0.31
41 AT5G12330 Lateral root primordium (LRP) protein-related LATERAL ROOT PRIMORDIUM 1 0.63 0.32 -0.31
42 AT2G39435 Phosphatidylinositol N-acetyglucosaminlytransferase subunit
P-related		 -0.62 0.32 -0.31
43 AT2G35920 RNA helicase family protein 0.62 0.33 -0.32
44 AT3G57010 Calcium-dependent phosphotriesterase superfamily protein 0.62 0.32 -0.3
45 AT3G18400 NAC domain containing protein 58 NAC domain containing protein 58,
NAC domain containing protein 58		 0.62 0.29 -0.3
46 AT2G33340 MOS4-associated complex 3B MOS4-associated complex 3B 0.62 0.33 -0.33
47 AT1G75660 5'-3' exoribonuclease 3 5'-3' EXORIBONUCLEASE 3, 5'-3'
exoribonuclease 3		 0.62 0.31 -0.31
48 AT5G61290 Flavin-binding monooxygenase family protein -0.62 0.32 -0.31
49 AT5G28640 SSXT family protein ANGUSTIFOLIA 3, ARABIDOPSIS
GRF1-INTERACTING FACTOR 1,
GRF1-INTERACTING FACTOR,
GRF1-INTERACTING FACTOR 1		 0.62 0.31 -0.3
50 AT1G47990 gibberellin 2-oxidase 4 Arabidopsis thaliana gibberellin
2-oxidase 4, gibberellin 2-oxidase
4		 0.62 0.3 -0.31
51 AT5G49760 Leucine-rich repeat protein kinase family protein -0.62 0.3 -0.31
52 AT1G30080 Glycosyl hydrolase superfamily protein 0.62 0.31 -0.3
53 AT5G53320 Leucine-rich repeat protein kinase family protein 0.62 0.31 -0.32
54 AT2G23830 PapD-like superfamily protein -0.62 0.31 -0.32
55 AT4G35910 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.61 0.34 -0.31
56 AT1G63710 cytochrome P450, family 86, subfamily A, polypeptide 7 cytochrome P450, family 86,
subfamily A, polypeptide 7		 -0.61 0.32 -0.32
57 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.33 -0.33
58 AT2G32280 Protein of unknown function (DUF1218) 0.61 0.31 -0.33
59 AT1G13590 phytosulfokine 1 precursor phytosulfokine 1 precursor,
phytosulfokine 1 precursor		 0.6 0.32 -0.3
60 AT1G11700 Protein of unknown function, DUF584 -0.6 0.31 -0.31
61 AT4G21710 DNA-directed RNA polymerase family protein EMBRYO DEFECTIVE 1989, NRPB2, RPB2 0.6 0.34 -0.31
62 AT5G24660 response to low sulfur 2 RESPONSE TO LOW SULFUR 2 -0.59 0.3 -0.3
63 AT1G07640 Dof-type zinc finger DNA-binding family protein OBP2 -0.59 0.31 -0.31
64 AT5G27000 kinesin 4 kinesin 4, KINESIN-LIKE PROTEIN IN
ARABIDOPSIS THALIANA D		 0.59 0.3 -0.31
65 AT3G62380 CONTAINS InterPro DOMAIN/s: F-box associated interaction
domain (InterPro:IPR017451); BEST Arabidopsis thaliana
protein match is: F-box family protein (TAIR:AT1G71320.1);
Has 422 Blast hits to 419 proteins in 26 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.59 0.33 -0.31
66 AT2G37340 arginine/serine-rich zinc knuckle-containing protein 33 arginine/serine-rich zinc
knuckle-containing protein 33,
ARGININE/SERINE-RICH ZINC
KNUCKLE-CONTAINING PROTEIN 33,
arginine/serine-rich zinc
knuckle-containing protein 33,
arginine/serine-rich zinc
knuckle-containing protein 33		 0.59 0.33 -0.32
67 AT2G34490 cytochrome P450, family 710, subfamily A, polypeptide 2 cytochrome P450, family 710,
subfamily A, polypeptide 2		 -0.58 0.32 -0.3
68 AT5G52320 cytochrome P450, family 96, subfamily A, polypeptide 4 cytochrome P450, family 96,
subfamily A, polypeptide 4		 -0.58 0.3 -0.3
69 AT1G09440 Protein kinase superfamily protein -0.58 0.33 -0.32
70 AT2G06040 CONTAINS InterPro DOMAIN/s: Leucine-rich repeat,
cysteine-containing subtype (InterPro:IPR006553); BEST
Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547
proteins in 240 species: Archae - 0; Bacteria - 125;
Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0;
Other Eukaryotes - 439 (source: NCBI BLink).		 0.57 0.32 -0.31
71 AT5G01160 RING/U-box superfamily protein 0.57 0.33 -0.31
72 AT4G31330 Protein of unknown function, DUF599 -0.57 0.33 -0.34
73 AT3G50850 Putative methyltransferase family protein 0.57 0.33 -0.31
74 AT1G50660 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins
in 1325 species: Archae - 461; Bacteria - 2309; Metazoa -
11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other
Eukaryotes - 4809 (source: NCBI BLink).		 0.57 0.33 -0.32
75 AT1G23010 Cupredoxin superfamily protein Low Phosphate Root1 0.57 0.32 -0.29
76 AT1G27620 HXXXD-type acyl-transferase family protein 0.57 0.32 -0.32
77 AT1G78620 Protein of unknown function DUF92, transmembrane -0.57 0.32 -0.29
78 AT4G20900 Tetratricopeptide repeat (TPR)-like superfamily protein MALE-STERILE 5, TDM1 -0.56 0.32 -0.32
79 AT3G59580 Plant regulator RWP-RK family protein -0.56 0.33 -0.32
80 AT1G01630 Sec14p-like phosphatidylinositol transfer family protein -0.56 0.32 -0.3
81 AT3G57600 Integrase-type DNA-binding superfamily protein -0.55 0.3 -0.3
82 AT5G54070 heat shock transcription factor A9 ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A9, heat
shock transcription factor A9		 -0.54 0.32 -0.31
83 AT1G77740 phosphatidylinositol-4-phosphate 5-kinase 2 phosphatidylinositol-4-phosphate
5-kinase 2		 -0.54 0.31 -0.35
84 AT4G16590 cellulose synthase-like A01 cellulose synthase-like A01,
CELLULOSE SYNTHASE-LIKE A1,
CSLA01, cellulose synthase-like
A01		 -0.54 0.33 -0.33
85 AT1G62500 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.54 0.31 -0.31
86 AT1G33430 Galactosyltransferase family protein -0.54 0.3 -0.3
87 AT3G56060 Glucose-methanol-choline (GMC) oxidoreductase family
protein		 -0.53 0.32 -0.3
88 AT2G47440 Tetratricopeptide repeat (TPR)-like superfamily protein -0.53 0.31 -0.32
89 AT3G17380 TRAF-like family protein -0.53 0.31 -0.32
90 AT5G19580 glyoxal oxidase-related protein -0.53 0.35 -0.29
91 AT5G11930 Thioredoxin superfamily protein -0.53 0.31 -0.31
92 AT2G14560 Protein of unknown function (DUF567) LATE UPREGULATED IN RESPONSE TO
HYALOPERONOSPORA PARASITICA		 -0.53 0.31 -0.3
93 AT3G60080 RING/U-box superfamily protein -0.52 0.31 -0.31
94 AT3G28680 Serine carboxypeptidase S28 family protein -0.52 0.32 -0.32
95 AT2G24220 purine permease 5 purine permease 5, purine permease
5		 -0.52 0.3 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
96 C0103 Glutaric acid - - - 0.64 0.44 -0.49
97 C0040 6-Methylsulfinyl-n-hexylglucosinolate - 6-Methylsulfinylhexyl glucosinolate glucosinolate biosynthesis from tetrahomomethionine -0.54 0.32 -0.3 C0040