AT5G46420 : -
Query Information
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AGICode AT5G46420
Description 16S rRNA processing protein RimM family
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G46420 16S rRNA processing protein RimM family 1 0.31 -0.29
2 AT1G08520 ALBINA 1 ALB-1V, ALBINA 1, CHLD, PIGMENT
DEFECTIVE EMBRYO 166, V157		 0.94 0.31 -0.31
3 AT3G29185 Domain of unknown function (DUF3598) 0.92 0.3 -0.32
4 AT4G39040 RNA-binding CRS1 / YhbY (CRM) domain protein 0.92 0.31 -0.32
5 AT1G14270 CAAX amino terminal protease family protein 0.92 0.32 -0.31
6 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.92 0.3 -0.35
7 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.91 0.33 -0.31
8 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.91 0.32 -0.3
9 AT5G36170 high chlorophyll fluorescent 109 ATPRFB, high chlorophyll
fluorescent 109		 0.91 0.29 -0.32
10 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.91 0.34 -0.29
11 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.91 0.33 -0.31
12 AT2G18710 SECY homolog 1 SECY homolog 1 0.91 0.31 -0.31
13 AT5G30510 ribosomal protein S1 ARRPS1, ribosomal protein S1 0.91 0.32 -0.34
14 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.31 -0.34
15 AT5G42765 INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast thylakoid membrane, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine
translocation pathway, signal sequence
(InterPro:IPR006311); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.9 0.33 -0.32
16 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.9 0.29 -0.32
17 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.9 0.31 -0.32
18 AT5G47190 Ribosomal protein L19 family protein 0.9 0.32 -0.33
19 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.9 0.33 -0.3
20 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.9 0.32 -0.31
21 AT3G19810 Protein of unknown function (DUF177) 0.9 0.31 -0.31
22 AT1G12800 Nucleic acid-binding, OB-fold-like protein 0.9 0.31 -0.34
23 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.9 0.31 -0.3
24 AT1G21350 Thioredoxin superfamily protein 0.89 0.32 -0.32
25 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.32 -0.32
26 AT2G33450 Ribosomal L28 family 0.89 0.32 -0.3
27 AT3G12685 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.89 0.33 -0.32
28 AT1G64355 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3593 (InterPro:IPR021995);
Has 301 Blast hits to 301 proteins in 96 species: Archae -
0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44;
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).		 0.89 0.33 -0.31
29 AT3G25805 unknown protein; Has 98 Blast hits to 98 proteins in 45
species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0;
Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.89 0.33 -0.3
30 AT2G47590 photolyase/blue-light receptor 2 photolyase/blue-light receptor 2 0.89 0.34 -0.33
31 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.89 0.31 -0.32
32 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.89 0.3 -0.31
33 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.89 0.31 -0.32
34 AT4G17560 Ribosomal protein L19 family protein 0.88 0.29 -0.31
35 AT2G45270 glycoprotease 1 glycoprotease 1 0.88 0.29 -0.33
36 AT2G47940 DEGP protease 2 DEGP protease 2, EMBRYO DEFECTIVE
3117		 0.88 0.31 -0.31
37 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.88 0.28 -0.29
38 AT1G32200 phospholipid/glycerol acyltransferase family protein ACYLTRANSFERASE 1, ATS1 0.88 0.29 -0.28
39 AT3G06950 Pseudouridine synthase family protein 0.88 0.33 -0.33
40 AT1G16080 unknown protein; LOCATED IN: apoplast, chloroplast stroma,
chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; Has 81
Blast hits to 81 proteins in 28 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 17 (source: NCBI BLink).		 0.88 0.32 -0.32
41 AT2G43030 Ribosomal protein L3 family protein 0.88 0.32 -0.31
42 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.33 -0.33
43 AT4G01050 thylakoid rhodanese-like thylakoid rhodanese-like 0.88 0.31 -0.31
44 AT5G15390 tRNA/rRNA methyltransferase (SpoU) family protein 0.88 0.31 -0.31
45 AT5G52970 thylakoid lumen 15.0 kDa protein 0.88 0.31 -0.32
46 AT5G14260 Rubisco methyltransferase family protein 0.87 0.32 -0.3
47 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.87 0.3 -0.31
48 AT4G39460 S-adenosylmethionine carrier 1 S-adenosylmethionine carrier 1,
SAM TRANSPORTER1		 0.87 0.31 -0.31
49 AT4G01310 Ribosomal L5P family protein 0.87 0.32 -0.32
50 AT2G35410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.32 -0.31
51 AT4G39970 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.87 0.3 -0.33
52 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.87 0.33 -0.32
53 AT3G58140 phenylalanyl-tRNA synthetase class IIc family protein 0.87 0.33 -0.33
54 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.87 0.33 -0.32
55 AT3G25660 Amidase family protein 0.87 0.32 -0.32
56 AT4G38160 Mitochondrial transcription termination factor family
protein		 pigment defective 191 0.87 0.33 -0.31
57 AT1G36390 Co-chaperone GrpE family protein 0.87 0.31 -0.3
58 AT3G18390 CRS1 / YhbY (CRM) domain-containing protein embryo defective 1865 0.87 0.32 -0.3
59 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.87 0.3 -0.33
60 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.87 0.29 -0.31
61 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.87 0.31 -0.32
62 AT2G44650 chloroplast chaperonin 10 chloroplast chaperonin 10,
CHLOROPLAST CHAPERONIN 10		 0.86 0.31 -0.33
63 AT3G60750 Transketolase 0.86 0.31 -0.32
64 AT3G18680 Amino acid kinase family protein 0.86 0.3 -0.31
65 AT3G13180 NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein		 0.86 0.31 -0.31
66 AT1G02910 tetratricopeptide repeat (TPR)-containing protein LOW PSII ACCUMULATION1 0.86 0.29 -0.31
67 AT3G09210 plastid transcriptionally active 13 plastid transcriptionally active
13		 0.86 0.32 -0.32
68 AT4G30950 fatty acid desaturase 6 fatty acid desaturase 6, FATTY
ACID DESATURASE C, STEAROYL
DESATURASE DEFICIENCY 4		 0.86 0.31 -0.32
69 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.86 0.3 -0.34
70 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.86 0.33 -0.33
71 AT1G31410 putrescine-binding periplasmic protein-related 0.86 0.32 -0.3
72 AT5G47840 adenosine monophosphate kinase adenosine monophosphate kinase 0.86 0.33 -0.31
73 AT5G54600 Translation protein SH3-like family protein 0.86 0.29 -0.3
74 AT4G10300 RmlC-like cupins superfamily protein 0.86 0.32 -0.31
75 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 0.86 0.32 -0.31
76 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.86 0.3 -0.33
77 AT5G20960 aldehyde oxidase 1 aldehyde oxidase 1, aldehyde
oxidase 1, aldehyde oxidase alpha,
ARABIDOPSIS THALIANA ALDEHYDE
OXIDASE 1, ATAO, Arabidopsis
thaliana aldehyde oxidase 1		 -0.81 0.33 -0.3
78 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.77 0.36 -0.31
79 AT3G53480 pleiotropic drug resistance 9 ATP-binding cassette G37,
PLEIOTROPIC DRUG RESISTANCE 9,
pleiotropic drug resistance 9,
polar auxin transport inhibitor
sensitive 1		 -0.77 0.31 -0.29
80 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.76 0.31 -0.33
81 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.75 0.31 -0.3
82 AT1G17180 glutathione S-transferase TAU 25 glutathione S-transferase TAU 25,
glutathione S-transferase TAU 25		 -0.73 0.3 -0.32
83 AT2G47130 NAD(P)-binding Rossmann-fold superfamily protein AtSDR3, short-chain
dehydrogenase/reductase 2		 -0.73 0.32 -0.31
84 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.73 0.31 -0.33
85 AT4G29690 Alkaline-phosphatase-like family protein -0.73 0.31 -0.3
86 AT3G26440 Protein of unknown function (DUF707) -0.72 0.31 -0.34
87 AT5G38030 MATE efflux family protein -0.71 0.29 -0.32
88 AT4G23690 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.69 0.32 -0.31
89 AT2G41660 Protein of unknown function, DUF617 mizu-kussei 1 -0.69 0.3 -0.31
90 AT3G15300 VQ motif-containing protein -0.68 0.3 -0.33
91 AT4G11350 Protein of unknown function (DUF604) -0.68 0.3 -0.31
92 AT5G37740 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.68 0.32 -0.33
93 AT1G44970 Peroxidase superfamily protein -0.67 0.33 -0.31
94 AT4G37410 cytochrome P450, family 81, subfamily F, polypeptide 4 cytochrome P450, family 81,
subfamily F, polypeptide 4		 -0.67 0.32 -0.3
95 AT5G22890 C2H2 and C2HC zinc fingers superfamily protein -0.67 0.33 -0.31
96 AT2G25520 Drug/metabolite transporter superfamily protein -0.67 0.31 -0.32
97 AT1G17060 cytochrome p450 72c1 CHIBI 2, cytochrome p450 72c1,
SHRINK 1, SUPPRESSOR OF PHYB-4 7		 -0.66 0.31 -0.32
98 AT5G17330 glutamate decarboxylase glutamate decarboxylase, GLUTAMATE
DECARBOXYLASE 1		 -0.66 0.32 -0.32
99 AT3G21710 unknown protein; Has 42 Blast hits to 42 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.33 -0.32
100 AT5G23830 MD-2-related lipid recognition domain-containing protein -0.65 0.33 -0.31
101 AT4G29270 HAD superfamily, subfamily IIIB acid phosphatase -0.65 0.32 -0.32
102 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 -0.65 0.3 -0.31
103 AT5G53290 cytokinin response factor 3 cytokinin response factor 3 -0.65 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
104 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.75 0.43 -0.45 C0051