AT5G45140 : nuclear RNA polymerase C2
Query Information
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AGICode AT5G45140
Description nuclear RNA polymerase C2
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 1 0.3 -0.32
2 AT4G37910 mitochondrial heat shock protein 70-1 mitochondrial heat shock protein
70-1		 0.84 0.3 -0.33
3 AT1G29940 nuclear RNA polymerase A2 nuclear RNA polymerase A2 0.83 0.31 -0.31
4 AT5G26860 lon protease 1 lon protease 1, LON_ARA_ARA 0.82 0.31 -0.3
5 AT1G67120 ATPases;nucleotide binding;ATP
binding;nucleoside-triphosphatases;transcription factor
binding		 0.81 0.31 -0.32
6 AT5G42540 exoribonuclease 2 EXORIBONUCLEASE 2, exoribonuclease
2		 0.79 0.31 -0.3
7 AT3G06530 ARM repeat superfamily protein 0.79 0.31 -0.32
8 AT1G06440 Ubiquitin carboxyl-terminal hydrolase family protein 0.78 0.36 -0.31
9 AT3G07770 HEAT SHOCK PROTEIN 89.1 HEAT SHOCK PROTEIN 90-6, HEAT
SHOCK PROTEIN 90.6, HEAT SHOCK
PROTEIN 89.1		 0.78 0.32 -0.31
10 AT4G31160 DDB1-CUL4 associated factor 1 DDB1-CUL4 associated factor 1 0.78 0.31 -0.32
11 AT5G35910 Polynucleotidyl transferase, ribonuclease H fold protein
with HRDC domain		 0.78 0.34 -0.33
12 AT1G52160 tRNAse Z3 tRNAse Z3 0.78 0.32 -0.33
13 AT4G30990 ARM repeat superfamily protein 0.77 0.3 -0.29
14 AT4G27010 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis
N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72270.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 EMBRYO DEFECTIVE 2788 0.77 0.3 -0.31
15 AT1G68990 male gametophyte defective 3 male gametophyte defective 3 0.77 0.31 -0.3
16 AT1G66890 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36
Blast hits to 36 proteins in 7 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.76 0.32 -0.29
17 AT1G51380 DEA(D/H)-box RNA helicase family protein 0.76 0.32 -0.31
18 AT5G15700 DNA/RNA polymerases superfamily protein 0.76 0.29 -0.3
19 AT3G57660 nuclear RNA polymerase A1 nuclear RNA polymerase A1 0.76 0.32 -0.32
20 AT2G04050 MATE efflux family protein 0.76 0.31 -0.31
21 AT4G13750 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 EMBRYO DEFECTIVE 2597, NO VEIN 0.76 0.3 -0.33
22 AT4G10000 Thioredoxin family protein -0.75 0.31 -0.3
23 AT3G07310 Protein of unknown function (DUF760) -0.75 0.3 -0.3
24 AT3G07660 Kinase-related protein of unknown function (DUF1296) 0.75 0.31 -0.32
25 AT5G48030 gametophytic factor 2 gametophytic factor 2 0.73 0.31 -0.31
26 AT2G02560 cullin-associated and neddylation dissociated CULLIN-ASSOCIATED AND NEDDYLATION
DISSOCIATED 1, cullin-associated
and neddylation dissociated, ETA2,
HEMIVENATA, TIP120		 0.73 0.32 -0.3
27 AT1G48970 NagB/RpiA/CoA transferase-like superfamily protein 0.73 0.31 -0.34
28 AT4G00830 RNA-binding (RRM/RBD/RNP motifs) family protein LHP1-Interacting Factor 2 0.72 0.33 -0.35
29 AT3G15590 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.32 -0.34
30 AT5G60040 nuclear RNA polymerase C1 nuclear RNA polymerase C1 0.72 0.3 -0.32
31 AT5G27540 MIRO-related GTP-ase 1 embryo defective 2473,
MIRO-related GTP-ase 1		 0.72 0.33 -0.31
32 AT3G17950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.72 0.31 -0.32
33 AT5G09420 translocon at the outer membrane of chloroplasts 64-V AtmtOM64, translocon at the outer
membrane of chloroplasts 64-V,
ARABIDOPSIS THALIANA TRANSLOCON AT
THE OUTER MEMBRANE OF CHLOROPLASTS
64-V, outer membrane 64,
translocon at the outer membrane
of chloroplasts 64-V		 0.72 0.3 -0.31
34 AT2G15000 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast
hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.72 0.31 -0.32
35 AT2G14120 dynamin related protein dynamin related protein 0.72 0.31 -0.32
36 AT1G56690 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.29 -0.32
37 AT5G17270 Protein prenylyltransferase superfamily protein 0.71 0.32 -0.32
38 AT4G16060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 42
Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink).		 -0.71 0.33 -0.33
39 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 0.7 0.32 -0.33
40 AT3G25655 inflorescence deficient in abscission (IDA)-like 1 inflorescence deficient in
abscission (IDA)-like 1		 0.7 0.33 -0.33
41 AT5G16400 thioredoxin F2 ATF2, thioredoxin F2 -0.7 0.31 -0.32
42 AT4G00355 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits
to 97 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 ATG8-interacting protein 2 -0.7 0.31 -0.3
43 AT5G48120 ARM repeat superfamily protein 0.7 0.33 -0.31
44 AT1G27600 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 Homolog,
IRREGULAR XYLEM 9-LIKE		 -0.69 0.32 -0.34
45 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain 0.69 0.3 -0.32
46 AT1G17720 Protein phosphatase 2A, regulatory subunit PR55 ATB BETA 0.69 0.28 -0.32
47 AT4G38200 SEC7-like guanine nucleotide exchange family protein 0.69 0.3 -0.31
48 AT1G26110 decapping 5 decapping 5 0.69 0.32 -0.31
49 AT3G07060 NHL domain-containing protein embryo defective 1974 0.69 0.3 -0.31
50 AT1G13810 Restriction endonuclease, type II-like superfamily protein 0.69 0.32 -0.32
51 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.68 0.32 -0.31
52 AT1G72750 translocase inner membrane subunit 23-2 translocase inner membrane subunit
23-2, translocase inner membrane
subunit 23-2		 0.68 0.3 -0.32
53 AT1G56145 Leucine-rich repeat transmembrane protein kinase 0.68 0.29 -0.3
54 AT1G17960 Threonyl-tRNA synthetase 0.68 0.33 -0.32
55 AT1G48420 D-cysteine desulfhydrase 1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, A. THALIANA
1-AMINOCYCLOPROPANE-1-CARBOXYLIC
ACID DEAMINASE 1, D-cysteine
desulfhydrase, D-cysteine
desulfhydrase		 -0.68 0.32 -0.31
56 AT3G06330 RING/U-box superfamily protein -0.67 0.32 -0.33
57 AT3G44330 INVOLVED IN: protein processing; LOCATED IN: mitochondrion,
endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nicalin
(InterPro:IPR016574), EF-Hand 1, calcium-binding site
(InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has
245 Blast hits to 243 proteins in 99 species: Archae - 6;
Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.67 0.31 -0.31
58 AT2G24790 CONSTANS-like 3 ATCOL3, CONSTANS-like 3 -0.67 0.31 -0.31
59 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 0.67 0.31 -0.32
60 AT2G43650 Sas10/U3 ribonucleoprotein (Utp) family protein EMBRYO DEFECTIVE 2777 0.67 0.33 -0.32
61 AT5G61880 Protein Transporter, Pam16 0.67 0.31 -0.33
62 AT1G76810 eukaryotic translation initiation factor 2 (eIF-2) family
protein		 0.67 0.32 -0.33
63 AT3G07100 Sec23/Sec24 protein transport family protein AtSEC24A, ENDOPLASMIC RETICULUM
MORPHOLOGY 2, SEC24A		 0.67 0.33 -0.34
64 AT3G58010 plastoglobulin 34kD plastoglobulin 34kD -0.67 0.32 -0.31
65 AT2G44300 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.67 0.32 -0.29
66 AT5G04490 vitamin E pathway gene 5 vitamin E pathway gene 5 -0.67 0.31 -0.34
67 AT5G25240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.67 0.33 -0.32
68 AT2G28520 vacuolar proton ATPase A1 vacuolar proton ATPase A1 0.67 0.33 -0.31
69 AT2G32730 26S proteasome regulatory complex, non-ATPase subcomplex,
Rpn2/Psmd1 subunit		 0.67 0.34 -0.3
70 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO 0.66 0.32 -0.33
71 AT1G26660 Prefoldin chaperone subunit family protein 0.66 0.32 -0.33
72 AT2G38540 lipid transfer protein 1 ARABIDOPSIS THALIANA LIPID
TRANSFER PROTEIN 1, lipid transfer
protein 1, LIPID TRANSFER PROTEIN
1		 -0.66 0.33 -0.28
73 AT3G59820 LETM1-like protein 0.66 0.33 -0.31
74 AT1G69630 F-box/RNI-like superfamily protein -0.66 0.3 -0.31
75 AT2G32980 unknown protein; Has 158 Blast hits to 154 proteins in 73
species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source:
NCBI BLink).		 -0.66 0.31 -0.32
76 AT1G51830 Leucine-rich repeat protein kinase family protein 0.66 0.29 -0.32
77 AT2G40410 Staphylococcal nuclease homologue -0.66 0.32 -0.33
78 AT1G14310 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.66 0.34 -0.31
79 AT4G36580 AAA-type ATPase family protein 0.66 0.32 -0.33
80 AT1G68650 Uncharacterized protein family (UPF0016) 0.66 0.3 -0.32
81 AT2G16950 transportin 1 TRANSPORTIN 1, transportin 1 0.65 0.3 -0.32
82 AT4G34500 Protein kinase superfamily protein -0.65 0.31 -0.31
83 AT5G08580 Calcium-binding EF hand family protein -0.65 0.33 -0.33
84 AT4G21140 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.65 0.32 -0.32
85 AT1G14390 Leucine-rich repeat protein kinase family protein 0.65 0.34 -0.34
86 AT1G68260 Thioesterase superfamily protein -0.65 0.32 -0.29
87 AT5G62610 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.65 0.3 -0.33
88 AT4G05070 Wound-responsive family protein -0.64 0.33 -0.32
89 AT1G19000 Homeodomain-like superfamily protein -0.63 0.33 -0.3
90 AT3G23840 HXXXD-type acyl-transferase family protein -0.63 0.33 -0.32
91 AT5G47520 RAB GTPase homolog A5A RAB GTPase homolog A5A, RAB GTPase
homolog A5A		 -0.63 0.33 -0.3
92 AT1G61410 DNA double-strand break repair and VJ recombination XRCC4 -0.63 0.32 -0.33
93 AT5G43870 Plant protein of unknown function (DUF828) with plant
pleckstrin homology-like region		 -0.63 0.32 -0.3
94 AT5G25610 BURP domain-containing protein ATRD22, RESPONSIVE TO DESSICATION
22		 -0.63 0.32 -0.32
95 AT5G02240 NAD(P)-binding Rossmann-fold superfamily protein -0.63 0.31 -0.28
96 AT4G27710 cytochrome P450, family 709, subfamily B, polypeptide 3 cytochrome P450, family 709,
subfamily B, polypeptide 3		 -0.63 0.33 -0.34
97 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.32 -0.31
98 AT4G01900 GLNB1 homolog GLNB1 homolog, PII -0.63 0.31 -0.31
99 AT1G12680 phosphoenolpyruvate carboxylase-related kinase 2 phosphoenolpyruvate
carboxylase-related kinase 2		 -0.63 0.31 -0.34
100 AT2G21185 unknown protein; Has 9 Blast hits to 9 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.3 -0.3
101 AT5G43830 Aluminium induced protein with YGL and LRDR motifs -0.62 0.3 -0.34
102 AT5G62080 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.62 0.31 -0.32
103 AT1G12550 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 hydroxypyruvate reductase 3 -0.62 0.29 -0.32
104 AT3G51690 PIF1 helicase -0.62 0.33 -0.33
105 AT5G14400 cytochrome P450, family 724, subfamily A, polypeptide 1 cytochrome P450, family 724,
subfamily A, polypeptide 1		 -0.62 0.31 -0.32
106 AT5G49230 Drought-responsive family protein HYPERSENSITIVE TO RED AND BLUE -0.62 0.31 -0.3
107 AT5G51320 transposable element gene -0.61 0.33 -0.32
108 AT3G52155 Phosphoglycerate mutase family protein -0.61 0.32 -0.32
109 AT5G41280 Receptor-like protein kinase-related family protein -0.61 0.31 -0.32
110 AT5G04180 alpha carbonic anhydrase 3 alpha carbonic anhydrase 3, ALPHA
CARBONIC ANHYDRASE 3		 -0.61 0.33 -0.32
111 AT2G17540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G35510.1); Has 39 Blast
hits to 39 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.61 0.32 -0.32
112 AT1G60010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in
18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.6 0.32 -0.33
113 AT2G39060 Nodulin MtN3 family protein AtSWEET9, SWEET9 -0.6 0.32 -0.33
114 AT3G19790 unknown protein; Has 32 Blast hits to 26 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 2;
Plants - 14; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.6 0.29 -0.32
115 AT2G47700 RING/U-box superfamily protein RED AND FAR-RED INSENSITIVE 2 -0.6 0.31 -0.33
116 AT5G07080 HXXXD-type acyl-transferase family protein -0.59 0.33 -0.32
117 AT1G69935 short hypocotyl in white light1 SHORT HYPOCOTYL IN WHITE LIGHT1 -0.59 0.3 -0.33
118 AT3G56270 Plant protein of unknown function (DUF827) -0.59 0.3 -0.33
119 AT4G38670 Pathogenesis-related thaumatin superfamily protein -0.59 0.3 -0.31
120 AT1G31190 myo-inositol monophosphatase like 1 myo-inositol monophosphatase like
1		 -0.59 0.32 -0.31
121 AT1G76900 tubby like protein 1 tubby like protein 1, tubby like
protein 1		 -0.59 0.33 -0.32
122 AT3G30370 CONTAINS InterPro DOMAIN/s: Transposase, MuDR, plant
(InterPro:IPR004332); BEST Arabidopsis thaliana protein
match is: SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein (TAIR:AT1G18050.1);
Has 35 Blast hits to 35 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.3 -0.31
123 AT1G07720 3-ketoacyl-CoA synthase 3 3-ketoacyl-CoA synthase 3 -0.59 0.33 -0.3
124 AT5G52540 Protein of unknown function (DUF819) -0.59 0.32 -0.29