AT5G43780 : APS4
Query Information
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AGICode AT5G43780
Description Pseudouridine synthase/archaeosine transglycosylase-like family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G43780 Pseudouridine synthase/archaeosine transglycosylase-like
family protein		 APS4 1 0.32 -0.32
2 AT1G77490 thylakoidal ascorbate peroxidase thylakoidal ascorbate peroxidase -0.71 0.32 -0.32
3 AT1G67280 Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily protein		 -0.7 0.3 -0.3
4 AT5G63760 RING/U-box superfamily protein ARIADNE 15, ARABIDOPSIS ARIADNE 15 0.7 0.36 -0.33
5 AT2G20875 epidermal patterning factor 1 EPIDERMAL PATTERNING FACTOR 1 -0.69 0.29 -0.32
6 AT3G01960 unknown protein; Has 13 Blast hits to 13 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.69 0.3 -0.35
7 ATCG00790 ribosomal protein L16 ribosomal protein L16 -0.68 0.33 -0.31
8 AT5G53450 OBP3-responsive gene 1 OBP3-responsive gene 1 -0.68 0.32 -0.31
9 AT4G25700 beta-hydroxylase 1 B1, BETA CAROTENOID HYDROXYLASE 1,
beta-hydroxylase 1, chy1		 -0.68 0.31 -0.31
10 AT2G30170 Protein phosphatase 2C family protein -0.68 0.33 -0.3
11 AT5G65210 bZIP transcription factor family protein TGA1 0.67 0.32 -0.3
12 AT1G56500 haloacid dehalogenase-like hydrolase family protein -0.67 0.33 -0.31
13 AT5G03415 Transcription factor DP ATDPB, DPB -0.67 0.3 -0.31
14 AT2G47070 squamosa promoter binding protein-like 1 squamosa promoter binding
protein-like 1		 -0.67 0.3 -0.3
15 AT4G32650 potassium channel in Arabidopsis thaliana 3 ARABIDOPSIS THALIANA K+ RECTIFYING
CHANNEL 1, A. thaliana
low-K+-tolerant 1, potassium
channel in Arabidopsis thaliana 3,
KC1		 0.66 0.34 -0.32
16 AT1G01790 K+ efflux antiporter 1 K+ EFFLUX ANTIPORTER 1, K+ efflux
antiporter 1		 -0.66 0.31 -0.31
17 AT2G43750 O-acetylserine (thiol) lyase B ARABIDOPSIS CYSTEINE SYNTHASE 1,
ARABIDOPSIS THALIANA CYSTEIN
SYNTHASE-B, CHLOROPLAST
O-ACETYLSERINE SULFHYDRYLASE 1,
O-acetylserine (thiol) lyase B		 -0.66 0.33 -0.31
18 AT4G13660 pinoresinol reductase 2 ATPRR2, pinoresinol reductase 2 0.66 0.33 -0.32
19 AT2G34770 fatty acid hydroxylase 1 ARABIDOPSIS FATTY ACID HYDROXYLASE
1, fatty acid hydroxylase 1		 -0.66 0.31 -0.34
20 AT5G60750 CAAX amino terminal protease family protein -0.65 0.33 -0.32
21 AT3G26060 Thioredoxin superfamily protein ATPRX Q, peroxiredoxin Q -0.65 0.32 -0.31
22 AT4G28410 Tyrosine transaminase family protein 0.65 0.31 -0.33
23 AT3G15720 Pectin lyase-like superfamily protein 0.65 0.33 -0.3
24 AT1G63080 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.31 -0.32
25 AT3G18290 zinc finger protein-related BRUTUS, embryo defective 2454 -0.65 0.29 -0.32
26 AT5G03880 Thioredoxin family protein -0.65 0.31 -0.3
27 AT3G15520 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.65 0.32 -0.32
28 AT1G79790 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 Arabidopsis thaliana chloroplast
FMN hydrolase 1, flavin
mononucleotide hydrolase 1		 -0.65 0.31 -0.3
29 AT4G20760 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.31 -0.3
30 AT5G27560 Domain of unknown function (DUF1995) -0.65 0.31 -0.31
31 ATCG00780 ribosomal protein L14 ribosomal protein L14 -0.65 0.34 -0.32
32 AT2G04700 ferredoxin thioredoxin reductase catalytic beta chain
family protein		 -0.64 0.31 -0.32
33 AT3G50790 esterase/lipase/thioesterase family protein -0.64 0.32 -0.32
34 AT3G14280 unknown protein; Has 51 Blast hits to 51 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.32 -0.3
35 AT1G75760 ER lumen protein retaining receptor family protein 0.63 0.32 -0.31
36 AT1G80080 Leucine-rich repeat (LRR) family protein Receptor Like Protein 17, TOO MANY
MOUTHS		 -0.63 0.3 -0.32
37 AT1G19620 unknown protein; Has 44 Blast hits to 24 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 22; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 8 (source: NCBI
BLink).		 -0.63 0.33 -0.32
38 AT5G44870 Disease resistance protein (TIR-NBS-LRR class) family LAZARUS 5, tolerance to Tobacco
ringspot virus 1		 -0.63 0.3 -0.31
39 AT2G15530 RING/U-box superfamily protein -0.63 0.31 -0.3
40 AT4G29670 atypical CYS HIS rich thioredoxin 2 atypical CYS HIS rich thioredoxin
2		 -0.63 0.31 -0.27
41 AT5G18430 GDSL-like Lipase/Acylhydrolase superfamily protein -0.63 0.31 -0.31
42 AT3G03520 non-specific phospholipase C3 non-specific phospholipase C3 0.63 0.33 -0.3
43 AT2G02450 NAC domain containing protein 35 Arabidopsis NAC domain containing
protein 34, NAC domain containing
protein 35, LONG VEGETATIVE PHASE
1, NAC domain containing protein
35		 -0.63 0.32 -0.32
44 AT5G39830 Trypsin family protein with PDZ domain DEG8, DEG PROTEASE 8 -0.63 0.31 -0.32
45 AT4G14210 phytoene desaturase 3 PIGMENT DEFECTIVE 226, PHYTOENE
DESATURASE, phytoene desaturase 3		 -0.63 0.29 -0.3
46 AT3G63490 Ribosomal protein L1p/L10e family EMBRYO DEFECTIVE 3126 -0.63 0.31 -0.32
47 AT1G09795 ATP phosphoribosyl transferase 2 ATP phosphoribosyl transferase 2,
ATP phosphoribosyl transferase 2,
HISN1B		 -0.63 0.31 -0.31
48 AT1G19190 alpha/beta-Hydrolases superfamily protein 0.63 0.31 -0.32
49 AT1G65260 plastid transcriptionally active 4 plastid transcriptionally active
4, VESICLE-INDUCING PROTEIN IN
PLASTIDS 1		 -0.62 0.3 -0.29
50 AT4G37330 cytochrome P450, family 81, subfamily D, polypeptide 4 cytochrome P450, family 81,
subfamily D, polypeptide 4		 -0.62 0.32 -0.31
51 AT5G62230 ERECTA-like 1 ERECTA-like 1 -0.62 0.32 -0.32
52 AT1G76930 extensin 4 EXTENSIN 1, extensin 4, extensin
1, extensin 4, OBP3-RESPONSIVE
GENE 5		 0.62 0.3 -0.31
53 AT2G39690 Protein of unknown function, DUF547 -0.62 0.33 -0.3
54 AT3G23310 AGC (cAMP-dependent, cGMP-dependent and protein kinase C)
kinase family protein		 -0.62 0.3 -0.31
55 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 -0.62 0.33 -0.29
56 AT2G26540 uroporphyrinogen-III synthase family protein DOMAIN OF UNKNOWN FUNCTION 724 3,
ARABIDOPSIS THALIANA
UROPORPHYRINOGEN III SYNTHASE,
DOMAIN OF UNKNOWN FUNCTION 724 3,
HEMD, UROPORPHYRINOGEN III
SYNTHASE		 -0.62 0.32 -0.33
57 AT5G47110 Chlorophyll A-B binding family protein LIL3:2 -0.62 0.34 -0.32
58 AT2G02680 Cysteine/Histidine-rich C1 domain family protein 0.62 0.3 -0.33
59 ATCG00520 unfolded protein binding YCF4 -0.62 0.32 -0.32
60 ATCG00380 chloroplast ribosomal protein S4 chloroplast ribosomal protein S4 -0.62 0.33 -0.3
61 AT3G11945 homogentisate prenyltransferase homogentisate prenyltransferase,
homogentisate prenyltransferase,
PHYTOENE DESATURATION 2		 -0.61 0.32 -0.32
62 AT4G31780 monogalactosyl diacylglycerol synthase 1 EMBRYO DEFECTIVE 2797,
monogalactosyl diacylglycerol
synthase 1,
MONOGALACTOSYLDIACYLGLYCEROL
SYNTHASE A, UDP-glycosyl
transferase 81A1		 -0.61 0.31 -0.31
63 AT1G32070 nuclear shuttle interacting nuclear shuttle interacting,
nuclear shuttle interacting		 -0.61 0.32 -0.31
64 AT3G02290 RING/U-box superfamily protein -0.61 0.32 -0.3
65 AT5G19370 rhodanese-like domain-containing protein / PPIC-type PPIASE
domain-containing protein		 -0.61 0.29 -0.31
66 AT1G32220 NAD(P)-binding Rossmann-fold superfamily protein -0.61 0.31 -0.32
67 AT1G28710 Nucleotide-diphospho-sugar transferase family protein -0.61 0.31 -0.33
68 AT3G62820 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.61 0.3 -0.29
69 AT2G32760 unknown protein; Has 229 Blast hits to 229 proteins in 104
species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi -
90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source:
NCBI BLink).		 -0.61 0.33 -0.31
70 AT3G63300 FORKED 1 FORKED 1 -0.61 0.32 -0.32
71 AT3G20100 cytochrome P450, family 705, subfamily A, polypeptide 19 cytochrome P450, family 705,
subfamily A, polypeptide 19		 0.6 0.3 -0.31
72 AT1G50320 thioredoxin X thioredoxin X, THIOREDOXIN X,
thioredoxin X		 -0.6 0.34 -0.31
73 AT1G64980 Nucleotide-diphospho-sugar transferases superfamily protein -0.6 0.33 -0.29
74 AT4G16140 proline-rich family protein -0.6 0.3 -0.31
75 AT2G20240 Protein of unknown function (DUF3741) -0.59 0.3 -0.3
76 AT2G40900 nodulin MtN21 /EamA-like transporter family protein 0.59 0.3 -0.3
77 AT3G26440 Protein of unknown function (DUF707) 0.59 0.32 -0.31
78 AT4G24020 NIN like protein 7 NIN like protein 7 -0.59 0.31 -0.32
79 AT3G06120 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 MUTE -0.59 0.34 -0.31
80 AT1G06240 Protein of unknown function DUF455 -0.59 0.32 -0.32
81 AT5G24690 Protein of unknown function (DUF3411) -0.59 0.31 -0.31
82 AT3G20070 titan9 TITAN9 -0.59 0.34 -0.3
83 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 -0.59 0.32 -0.3
84 AT2G46250 myosin heavy chain-related -0.59 0.35 -0.32
85 AT4G33520 P-type ATP-ase 1 Arabidopsis thaliana heavy metal
ATPase 6, HEAVY METAL ATPASE 6,
P-type ATP-ase 1		 -0.58 0.32 -0.3
86 AT1G03055 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits
to 143 proteins in 26 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 -0.58 0.32 -0.35
87 AT2G34860 DnaJ/Hsp40 cysteine-rich domain superfamily protein embryo sac development arrest 3 -0.58 0.29 -0.34
88 AT1G12030 Protein of unknown function (DUF506) -0.58 0.33 -0.32
89 AT3G10350 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.58 0.34 -0.31
90 AT1G35510 O-fucosyltransferase family protein -0.58 0.32 -0.33
91 AT3G15900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.58 0.31 -0.31
92 ATCG01090 NADPH dehydrogenases NDHI -0.58 0.3 -0.33
93 AT1G52510 alpha/beta-Hydrolases superfamily protein -0.58 0.3 -0.31
94 AT5G66940 Dof-type zinc finger DNA-binding family protein -0.58 0.34 -0.32
95 AT1G55610 BRI1 like BRI1 like 0.58 0.3 -0.32
96 AT1G03000 peroxin 6 peroxin 6 -0.58 0.32 -0.33
97 AT5G14860 UDP-Glycosyltransferase superfamily protein -0.58 0.32 -0.31
98 AT5G67370 Protein of unknown function (DUF1230) -0.58 0.34 -0.29
99 AT5G53200 Homeodomain-like superfamily protein TRIPTYCHON -0.58 0.3 -0.31
100 AT2G25000 WRKY DNA-binding protein 60 ATWRKY60, WRKY DNA-binding protein
60		 0.57 0.3 -0.32
101 AT5G59780 myb domain protein 59 MYB DOMAIN PROTEIN 59, ATMYB59-1,
ATMYB59-2, ATMYB59-3, myb domain
protein 59		 0.56 0.33 -0.31
102 AT2G44450 beta glucosidase 15 beta glucosidase 15 0.56 0.33 -0.31
103 AT2G25520 Drug/metabolite transporter superfamily protein 0.55 0.31 -0.29
104 AT1G14780 MAC/Perforin domain-containing protein 0.55 0.34 -0.31
105 AT4G29680 Alkaline-phosphatase-like family protein 0.55 0.3 -0.33
106 AT3G43670 Copper amine oxidase family protein 0.54 0.33 -0.32
107 AT2G45280 RAS associated with diabetes protein 51C RAS associated with diabetes
protein 51C, RAS associated with
diabetes protein 51C		 0.54 0.32 -0.32
108 AT5G63580 flavonol synthase 2 ATFLS2, flavonol synthase 2 0.54 0.33 -0.32
109 AT2G26290 root-specific kinase 1 root-specific kinase 1 0.53 0.32 -0.33
110 AT5G55050 GDSL-like Lipase/Acylhydrolase superfamily protein 0.53 0.31 -0.32
111 AT3G24400 pseudogene, protein kinase family, contains Pfam PF00069:
Protein kinase domain; blastp match of 72% identity and
1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus}		 proline-rich extensin-like
receptor kinase 2, proline-rich
extensin-like receptor kinase 2		 0.52 0.32 -0.32
112 AT5G10180 slufate transporter 2;1 ARABIDOPSIS SULFATE TRANSPORTER
68, sulfate transporter 2;1		 0.51 0.29 -0.31
113 AT5G44500 Small nuclear ribonucleoprotein family protein 0.51 0.32 -0.33
114 AT5G60250 zinc finger (C3HC4-type RING finger) family protein 0.51 0.32 -0.3
115 AT3G14360 alpha/beta-Hydrolases superfamily protein 0.5 0.32 -0.3
116 AT5G55680 glycine-rich protein 0.5 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
117 C0248 Sulfoquinovosyldiacylglycerol-36:3 - Sulfoquinovosyldiacylglycerol sulfolipid biosynthesis -0.78 0.53 -0.5 C0248
118 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		-0.74 0.46 -0.43 C0233
119 C0019 1-O-β-Glucopyranosylsinapic acid 1-O-β-D-Glucopyranosylsinapic acid - phenylpropanoid pathwayl,
lignin biosynthesis 		-0.71 0.45 -0.46
120 C0239 Spermidine - Spermidine spermine biosynthesis,
spermine and spermidine degradation III,
beta-alanine biosynthesis I,
hypusine biosynthesis,
spermidine hydroxycinnamic acid conjugates biosynthesis,
spermidine biosynthesis I 		0.66 0.45 -0.46 C0239
121 C0024 2-(Anilinomethyl)pyrrolidine (S)-(+)-2-(anilinomethyl)pyrrolidine - - -0.66 0.43 -0.45
122 C0059 Arginine amide - - - -0.64 0.43 -0.47
123 C0089 Fortunellin - - - -0.63 0.47 -0.44