AT5G42190 : Arabidopsis SKP-like 2
Query Information
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AGICode AT5G42190
Description E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G42190 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family
protein		 Arabidopsis SKP-like 2, SKP1B 1 0.31 -0.32
2 AT2G47700 RING/U-box superfamily protein RED AND FAR-RED INSENSITIVE 2 0.71 0.32 -0.33
3 AT1G72160 Sec14p-like phosphatidylinositol transfer family protein 0.7 0.34 -0.29
4 AT5G03180 RING/U-box superfamily protein 0.7 0.31 -0.32
5 AT5G37590 Tetratricopeptide repeat (TPR)-like superfamily protein -0.69 0.32 -0.32
6 AT4G25780 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.68 0.3 -0.33
7 AT3G44340 clone eighty-four clone eighty-four -0.64 0.31 -0.31
8 AT4G04760 Major facilitator superfamily protein -0.63 0.31 -0.33
9 AT2G26110 Protein of unknown function (DUF761) 0.63 0.32 -0.33
10 AT5G42200 RING/U-box superfamily protein 0.63 0.33 -0.3
11 AT4G28240 Wound-responsive family protein 0.62 0.32 -0.32
12 AT1G54740 Protein of unknown function (DUF3049) 0.62 0.35 -0.31
13 AT5G60680 Protein of unknown function, DUF584 0.62 0.3 -0.31
14 AT1G11380 PLAC8 family protein 0.62 0.31 -0.31
15 AT1G13700 6-phosphogluconolactonase 1 6-phosphogluconolactonase 1 0.62 0.3 -0.29
16 AT5G18690 arabinogalactan protein 25 arabinogalactan protein 25,
ARABIDOPSIS THALIANA
ARABINOGALACTAN PROTEINS 25		 0.62 0.32 -0.32
17 AT5G10860 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 3 0.62 0.3 -0.3
18 AT1G04010 phospholipid sterol acyl transferase 1 ATPSAT1, phospholipid sterol acyl
transferase 1		 -0.61 0.3 -0.31
19 AT3G13450 Transketolase family protein DARK INDUCIBLE 4 0.61 0.3 -0.33
20 AT5G01740 Nuclear transport factor 2 (NTF2) family protein 0.61 0.31 -0.32
21 AT5G63620 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.61 0.3 -0.33
22 AT4G24060 Dof-type zinc finger DNA-binding family protein 0.61 0.34 -0.28
23 AT4G39480 cytochrome P450, family 96, subfamily A, polypeptide 9 cytochrome P450, family 96,
subfamily A, polypeptide 9		 0.6 0.3 -0.32
24 AT5G13390 no exine formation 1 NO EXINE FORMATION 1 -0.6 0.3 -0.34
25 AT5G10710 INVOLVED IN: chromosome segregation, cell division; LOCATED
IN: chromosome, centromeric region, nucleus; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O
(InterPro:IPR018464); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.6 0.32 -0.33
26 AT5G57655 xylose isomerase family protein 0.6 0.32 -0.32
27 AT3G55940 Phosphoinositide-specific phospholipase C family protein -0.59 0.29 -0.31
28 AT3G23040 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.31 -0.3
29 AT1G28330 dormancy-associated protein-like 1 DORMANCY-ASSOCIATED PROTEIN 1,
dormancy-associated protein-like 1		 0.59 0.32 -0.29
30 AT1G36940 unknown protein; Has 21 Blast hits to 21 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.32 -0.32
31 AT5G46140 Protein of unknown function (DUF295) -0.57 0.32 -0.32
32 AT2G28085 SAUR-like auxin-responsive protein family -0.57 0.31 -0.33
33 AT1G62290 Saposin-like aspartyl protease family protein 0.57 0.34 -0.32
34 AT3G50500 SNF1-related protein kinase 2.2 SNF1-RELATED PROTEIN KINASE 2-2,
SNF1-related protein kinase 2.2,
SNF1-RELATED PROTEIN KINASE 2-2,
SRK2D		 0.57 0.34 -0.33
35 AT5G57785 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.57 0.32 -0.29
36 AT4G35770 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARABIDOPSIS THALIANA SENESCENCE 1,
DARK INDUCIBLE 1, SENESCENCE 1,
SENESCENCE ASSOCIATED GENE 1		 0.56 0.32 -0.33
37 AT5G63850 amino acid permease 4 amino acid permease 4 -0.56 0.31 -0.31
38 AT1G24450 Ribonuclease III family protein NUCLEAR FUSION DEFECTIVE 2 0.56 0.3 -0.31
39 AT5G30490 CONTAINS InterPro DOMAIN/s: Craniofacial development
protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast
hits to 324 proteins in 149 species: Archae - 0; Bacteria -
18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0;
Other Eukaryotes - 53 (source: NCBI BLink).		 -0.56 0.32 -0.33
40 AT2G01330 nucleotide binding -0.55 0.32 -0.31
41 AT4G00560 NAD(P)-binding Rossmann-fold superfamily protein 0.55 0.32 -0.3
42 AT2G35720 DNAJ heat shock N-terminal domain-containing protein ORIENTATION UNDER VERY LOW
FLUENCES OF LIGHT 1		 -0.55 0.31 -0.32
43 AT5G62900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.55 0.32 -0.34
44 AT1G23390 Kelch repeat-containing F-box family protein 0.55 0.31 -0.31
45 AT5G54650 formin homology5 FORMIN HOMOLOGY 5, formin
homology5		 -0.55 0.32 -0.29
46 AT1G06050 Protein of unknown function (DUF1336) -0.55 0.3 -0.31
47 AT1G73310 serine carboxypeptidase-like 4 serine carboxypeptidase-like 4 -0.55 0.31 -0.32
48 AT4G03510 RING membrane-anchor 1 ATRMA1, RING membrane-anchor 1 0.55 0.32 -0.33
49 AT4G25020 D111/G-patch domain-containing protein -0.55 0.33 -0.31
50 AT5G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.54 0.31 -0.31
51 AT2G04305 Magnesium transporter CorA-like family protein -0.54 0.31 -0.3
52 AT1G75550 glycine-rich protein -0.54 0.33 -0.32
53 AT2G05540 Glycine-rich protein family 0.54 0.33 -0.29
54 AT4G10120 Sucrose-phosphate synthase family protein ATSPS4F -0.53 0.32 -0.33
55 AT3G04220 Disease resistance protein (TIR-NBS-LRR class) family -0.53 0.31 -0.32
56 AT5G23520 smr (Small MutS Related) domain-containing protein -0.52 0.28 -0.29
57 AT2G33830 Dormancy/auxin associated family protein 0.52 0.33 -0.32
58 AT3G30180 brassinosteroid-6-oxidase 2 brassinosteroid-6-oxidase 2,
CYP85A2		 0.52 0.32 -0.32
59 AT5G28820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G27260.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.52 0.32 -0.33
60 AT3G57960 Emsy N Terminus (ENT) domain-containing protein -0.52 0.31 -0.32
61 AT5G20930 Protein kinase superfamily protein TOUSLED -0.52 0.33 -0.33
62 AT4G09820 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH42, TRANSPARENT TESTA 8 -0.52 0.32 -0.31
63 AT4G07940 Protein of unknown function (DUF3245) -0.52 0.32 -0.3
64 AT3G54080 Concanavalin A-like lectin family protein 0.52 0.32 -0.3
65 AT3G50660 Cytochrome P450 superfamily protein CLOMAZONE-RESISTANT, CYTOCHROME
P450 90B1, DWARF 4, PARTIALLY
SUPPRESSING COI1 INSENSITIVITY TO
JA 1, SHADE AVOIDANCE 1,
SUPPRESSOR OF NPH4 2		 0.51 0.3 -0.3
66 AT4G36105 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G17990.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.51 0.31 -0.31
67 AT1G76190 SAUR-like auxin-responsive protein family -0.51 0.31 -0.31
68 AT5G20450 CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);
BEST Arabidopsis thaliana protein match is: Myosin family
protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast
hits to 1458 proteins in 355 species: Archae - 28; Bacteria
- 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses -
3; Other Eukaryotes - 412 (source: NCBI BLink).		 -0.51 0.34 -0.33
69 AT1G05860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast
hits to 100 proteins in 32 species: Archae - 0; Bacteria -
0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink).		 0.51 0.32 -0.31
70 AT2G14300 transposable element gene 0.5 0.31 -0.31
71 AT1G64470 Ubiquitin-like superfamily protein 0.5 0.3 -0.31
72 AT4G00335 RING-H2 finger B1A RING-H2 finger B1A 0.5 0.3 -0.33
73 AT1G67470 Protein kinase superfamily protein -0.5 0.3 -0.33
74 AT1G47570 RING/U-box superfamily protein 0.5 0.32 -0.31
75 AT4G02200 Drought-responsive family protein -0.5 0.33 -0.32
76 AT1G43780 serine carboxypeptidase-like 44 serine carboxypeptidase-like 44 -0.49 0.32 -0.34
77 AT5G15920 structural maintenance of chromosomes 5 EMBRYO DEFECTIVE 2782, structural
maintenance of chromosomes 5		 -0.49 0.31 -0.31
78 AT5G01560 lectin receptor kinase a4.3 lectin receptor kinase a4.3 -0.49 0.31 -0.31
79 AT1G79000 histone acetyltransferase of the CBP family 1 ARABIDOPSIS HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 1, ARABIDOPSIS THALIANA
P300/CBP ACETYLTRANSFERASE-RELATED
PROTEIN 2, histone
acetyltransferase of the CBP
family 1, P300/CBP
ACETYLTRANSFERASE-RELATED PROTEIN
2		 -0.49 0.32 -0.29
80 AT4G32970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32960.1); Has 552 Blast hits
to 489 proteins in 85 species: Archae - 4; Bacteria - 14;
Metazoa - 187; Fungi - 12; Plants - 225; Viruses - 0; Other
Eukaryotes - 110 (source: NCBI BLink).		 -0.48 0.32 -0.31
81 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 -0.48 0.33 -0.33
82 AT1G13070 putative cytochrome P450 cytochrome P450, family 71,
subfamily B, polypeptide 27		 -0.48 0.29 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
83 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.7 0.44 -0.44 C0131
84 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.62 0.44 -0.47 C0033