AT5G39860 : BASIC HELIX-LOOP-HELIX PROTEIN 136
Query Information
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AGICode AT5G39860
Description basic helix-loop-helix (bHLH) DNA-binding family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G39860 basic helix-loop-helix (bHLH) DNA-binding family protein BASIC HELIX-LOOP-HELIX PROTEIN
136, BANQUO 1, PACLOBUTRAZOL
RESISTANCE1		 1 0.33 -0.32
2 AT1G69010 BES1-interacting Myc-like protein 2 BES1-interacting Myc-like protein
2		 0.75 0.33 -0.32
3 AT5G65510 AINTEGUMENTA-like 7 AINTEGUMENTA-like 7, PLETHORA 7 -0.74 0.33 -0.3
4 AT5G59050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.73 0.32 -0.32
5 AT5G25820 Exostosin family protein -0.73 0.32 -0.32
6 AT1G64980 Nucleotide-diphospho-sugar transferases superfamily protein 0.73 0.31 -0.32
7 AT2G26650 K+ transporter 1 K+ transporter 1, ATAKT1, K+
transporter 1		 -0.73 0.31 -0.3
8 AT1G70210 CYCLIN D1;1 ATCYCD1;1, CYCLIN D1;1 0.73 0.32 -0.31
9 AT5G54530 Protein of unknown function, DUF538 0.72 0.31 -0.33
10 AT2G21600 endoplasmatic reticulum retrieval protein 1B endoplasmatic reticulum retrieval
protein 1B, endoplasmatic
reticulum retrieval protein 1B		 0.72 0.32 -0.31
11 AT1G74490 Protein kinase superfamily protein -0.71 0.34 -0.31
12 AT4G32590 2Fe-2S ferredoxin-like superfamily protein 0.71 0.32 -0.3
13 AT3G13980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits
to 418 proteins in 98 species: Archae - 0; Bacteria - 6;
Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other
Eukaryotes - 1059 (source: NCBI BLink).		 0.71 0.33 -0.32
14 AT3G22070 proline-rich family protein 0.71 0.31 -0.31
15 AT2G28690 Protein of unknown function (DUF1635) -0.71 0.32 -0.31
16 AT3G09980 Family of unknown function (DUF662) 0.7 0.3 -0.32
17 AT5G25160 zinc finger protein 3 zinc finger protein 3 -0.7 0.33 -0.32
18 AT2G19700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.7 0.31 -0.33
19 AT5G62430 cycling DOF factor 1 cycling DOF factor 1 0.7 0.31 -0.33
20 AT5G65520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.3 -0.3
21 AT4G14550 indole-3-acetic acid inducible 14 indole-3-acetic acid inducible 14,
SOLITARY ROOT		 0.7 0.31 -0.3
22 AT2G44230 Plant protein of unknown function (DUF946) 0.69 0.31 -0.33
23 AT5G45970 RAC-like 2 Arabidopsis RAC-like 2,
ARABIDOPSIS THALIANA RAC 2,
RHO-RELATED PROTEIN FROM PLANTS 7,
RAC-like 2, ROP7		 0.69 0.35 -0.31
24 AT5G24280 gamma-irradiation and mitomycin c induced 1 GAMMA-IRRADIATION AND MITOMYCIN C
INDUCED 1		 -0.69 0.31 -0.31
25 AT2G23480 transposable element gene 0.69 0.32 -0.32
26 AT2G17300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast
hits to 42 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.69 0.32 -0.32
27 AT2G42060 Cysteine/Histidine-rich C1 domain family protein -0.69 0.3 -0.3
28 AT2G42800 receptor like protein 29 receptor like protein 29, receptor
like protein 29		 0.69 0.32 -0.31
29 AT1G56010 NAC domain containing protein 1 Arabidopsis NAC domain containing
protein 21, Arabidopsis NAC domain
containing protein 22, NAC domain
containing protein 1		 -0.69 0.32 -0.32
30 AT1G19290 Pentatricopeptide repeat (PPR) superfamily protein -0.69 0.32 -0.32
31 AT2G44740 cyclin p4;1 cyclin p4;1 0.69 0.31 -0.3
32 AT2G37670 Transducin/WD40 repeat-like superfamily protein -0.69 0.32 -0.32
33 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 0.69 0.32 -0.31
34 AT5G04150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH101 0.68 0.32 -0.33
35 AT2G19640 ASH1-related protein 2 ASH1-related 2, SET DOMAIN PROTEIN
39		 -0.68 0.3 -0.29
36 AT1G26290 unknown protein; Has 126 Blast hits to 112 proteins in 36
species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 3;
Plants - 14; Viruses - 0; Other Eukaryotes - 89 (source:
NCBI BLink).		 0.68 0.33 -0.3
37 AT3G48920 myb domain protein 45 myb domain protein 45, myb domain
protein 45		 -0.68 0.32 -0.32
38 AT1G58070 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).		 0.68 0.33 -0.31
39 AT5G42560 Abscisic acid-responsive (TB2/DP1, HVA22) family protein 0.68 0.34 -0.3
40 AT2G47880 Glutaredoxin family protein 0.67 0.31 -0.33
41 AT3G61970 AP2/B3-like transcriptional factor family protein NGATHA2 0.67 0.32 -0.31
42 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.67 0.33 -0.32
43 AT3G11050 ferritin 2 ferritin 2, ferritin 2 -0.66 0.33 -0.31
44 AT4G12350 myb domain protein 42 myb domain protein 42, myb domain
protein 42		 -0.66 0.33 -0.33
45 AT3G51520 diacylglycerol acyltransferase family 0.66 0.31 -0.31
46 AT5G01930 Glycosyl hydrolase superfamily protein AtMAN6, endo-beta-mannase 6 0.66 0.33 -0.3
47 AT1G67890 PAS domain-containing protein tyrosine kinase family
protein		 0.66 0.32 -0.29
48 AT5G15110 Pectate lyase family protein -0.66 0.31 -0.31
49 AT5G07710 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.66 0.3 -0.31
50 AT3G24340 chromatin remodeling 40 chromatin remodeling 40 -0.66 0.31 -0.32
51 AT3G04420 NAC domain containing protein 48 NAC domain containing protein 48,
NAC domain containing protein 48		 -0.66 0.31 -0.29
52 AT3G56980 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH039, OBP3-RESPONSIVE GENE 3 0.66 0.31 -0.35
53 AT2G27380 extensin proline-rich 1 extensin proline-rich 1, extensin
proline-rich 1		 -0.66 0.33 -0.31
54 AT4G35500 Protein kinase superfamily protein -0.66 0.33 -0.32
55 AT4G33450 myb domain protein 69 MYB DOMAIN PROTEIN 69, myb domain
protein 69		 -0.66 0.31 -0.31
56 AT2G45290 Transketolase -0.66 0.3 -0.31
57 AT4G29285 low-molecular-weight cysteine-rich 24 low-molecular-weight cysteine-rich
24		 -0.66 0.31 -0.32
58 AT4G21590 endonuclease 3 endonuclease 3 -0.65 0.34 -0.31
59 AT1G59760 RNA helicase, ATP-dependent, SK12/DOB1 protein AtMTR4, homolog of yeast MTR4 -0.65 0.33 -0.33
60 AT2G13940 transposable element gene -0.65 0.32 -0.31
61 AT4G35930 F-box family protein 0.65 0.3 -0.32
62 AT2G18245 alpha/beta-Hydrolases superfamily protein 0.65 0.3 -0.29
63 AT1G10720 BSD domain-containing protein 0.65 0.3 -0.31
64 AT3G13720 PRA1 (Prenylated rab acceptor) family protein PRENYLATED RAB ACCEPTOR 1.F3, PRA8 0.65 0.33 -0.31
65 AT1G50420 scarecrow-like 3 SCARECROW-LIKE 3, scarecrow-like 3 -0.65 0.3 -0.31
66 AT1G21310 extensin 3 extensin 3, extensin 3,
ROOT-SHOOT-HYPOCOTYL DEFECTIVE		 -0.65 0.31 -0.34
67 AT4G16260 Glycosyl hydrolase superfamily protein -0.65 0.31 -0.29
68 AT5G67370 Protein of unknown function (DUF1230) 0.65 0.33 -0.3
69 AT4G27430 COP1-interacting protein 7 COP1-interacting protein 7 0.64 0.31 -0.31
70 AT3G61260 Remorin family protein 0.64 0.32 -0.3
71 AT2G36710 Pectin lyase-like superfamily protein 0.64 0.32 -0.31
72 AT1G16830 Pentatricopeptide repeat (PPR) superfamily protein -0.64 0.3 -0.31
73 AT5G19140 Aluminium induced protein with YGL and LRDR motifs AILP1, ATAILP1 0.64 0.33 -0.3
74 AT2G24010 serine carboxypeptidase-like 23 serine carboxypeptidase-like 23 0.64 0.33 -0.31
75 AT1G69690 TCP family transcription factor AtTCP15, TEOSINTE
BRANCHED1/CYCLOIDEA/PCF 15		 0.64 0.33 -0.31
76 AT1G79780 Uncharacterised protein family (UPF0497) -0.64 0.34 -0.32
77 AT5G02560 histone H2A 12 histone H2A 12 0.64 0.31 -0.34
78 AT5G51160 Ankyrin repeat family protein -0.64 0.31 -0.31
79 AT1G47400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.32 -0.31
80 AT1G06060 LisH and RanBPM domains containing protein 0.64 0.32 -0.33
81 AT5G13380 Auxin-responsive GH3 family protein -0.64 0.3 -0.31
82 AT1G20280 homeobox-leucine zipper protein-related -0.64 0.3 -0.34
83 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 0.64 0.31 -0.32
84 AT5G01840 ovate family protein 1 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 1, ovate family protein 1		 -0.64 0.33 -0.31
85 AT5G38170 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.63 0.32 -0.32
86 AT5G38340 Disease resistance protein (TIR-NBS-LRR class) family -0.63 0.33 -0.31
87 AT3G10760 Homeodomain-like superfamily protein 0.63 0.3 -0.32
88 AT4G04410 transposable element gene -0.63 0.3 -0.32
89 AT2G16760 Calcium-dependent phosphotriesterase superfamily protein -0.63 0.3 -0.32
90 AT5G44970 Protein with RNI-like/FBD-like domains -0.63 0.29 -0.32
91 AT5G66160 receptor homology region transmembrane domain ring H2 motif
protein 1		 ARABIDOPSIS THALIANA RECEPTOR
HOMOLOGY REGION TRANSMEMBRANE
DOMAIN RING H2 MOTIF PROTEIN 1,
receptor homology region
transmembrane domain ring H2 motif
protein 1		 0.63 0.32 -0.3
92 AT4G35335 Nucleotide-sugar transporter family protein 0.63 0.33 -0.31
93 AT3G55160 unknown protein; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2428, death-receptor-like
(InterPro:IPR019442); Has 357 Blast hits to 330 proteins in
163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi
- 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45
(source: NCBI BLink).		 -0.63 0.32 -0.31
94 AT1G05750 Tetratricopeptide repeat (TPR)-like superfamily protein CLB19, pigment defective 247 -0.63 0.32 -0.32
95 AT1G32450 nitrate transporter 1.5 nitrate transporter 1.5 -0.63 0.33 -0.32
96 AT1G43570 transposable element gene -0.63 0.33 -0.32
97 AT1G33900 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.63 0.31 -0.32
98 AT4G05280 transposable element gene -0.63 0.33 -0.34
99 AT4G38440 LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II-associated protein 1,
C-terminal (InterPro:IPR013929), RNA polymerase
II-associated protein 1, N-terminal (InterPro:IPR013930);
Has 276 Blast hits to 220 proteins in 102 species: Archae -
0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).		 MINIYO -0.62 0.32 -0.32
100 AT5G06480 Immunoglobulin E-set superfamily protein 0.62 0.31 -0.33
101 AT4G09100 RING/U-box superfamily protein -0.62 0.3 -0.32
102 AT1G49150 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.31 -0.3
103 AT1G17410 Nucleoside diphosphate kinase family protein 0.62 0.32 -0.31
104 AT4G22770 AT hook motif DNA-binding family protein -0.62 0.34 -0.29
105 AT2G45960 plasma membrane intrinsic protein 1B ATHH2, NAMED PLASMA MEMBRANE
INTRINSIC PROTEIN 1;2, plasma
membrane intrinsic protein 1B,
TRANSMEMBRANE PROTEIN A		 0.62 0.31 -0.34
106 AT5G05130 DNA/RNA helicase protein -0.62 0.32 -0.32
107 AT1G12030 Protein of unknown function (DUF506) 0.62 0.32 -0.31
108 AT4G20770 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.33 -0.3
109 AT5G45180 Flavin-binding monooxygenase family protein -0.62 0.31 -0.32
110 AT3G48880 RNI-like superfamily protein 0.62 0.3 -0.32
111 AT1G66150 transmembrane kinase 1 transmembrane kinase 1 0.62 0.3 -0.33
112 AT5G51690 1-amino-cyclopropane-1-carboxylate synthase 12 1-amino-cyclopropane-1-carboxylate
synthase 12		 -0.62 0.33 -0.33
113 AT1G22960 Pentatricopeptide repeat (PPR) superfamily protein -0.62 0.32 -0.31
114 AT5G52950 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.31 -0.3
115 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 -0.62 0.33 -0.3
116 AT3G50890 homeobox protein 28 homeobox protein 28, homeobox
protein 28, ZINC FINGER
HOMEODOMAIN 7		 0.62 0.32 -0.31
117 AT1G69160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits
to 172 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other
Eukaryotes - 29 (source: NCBI BLink).		 0.62 0.3 -0.31
118 AT1G55610 BRI1 like BRI1 like -0.62 0.31 -0.32
119 AT3G46500 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.33 -0.31
120 AT3G43760 transposable element gene -0.62 0.35 -0.32
121 AT2G41620 Nucleoporin interacting component (Nup93/Nic96-like) family
protein		 -0.61 0.32 -0.31
122 AT2G21090 Pentatricopeptide repeat (PPR-like) superfamily protein -0.61 0.28 -0.33
123 AT5G25840 Protein of unknown function (DUF1677) 0.61 0.31 -0.31
124 AT2G46070 mitogen-activated protein kinase 12 ATMPK12, MAPK12, mitogen-activated
protein kinase 12		 0.61 0.31 -0.32
125 AT4G04560 transposable element gene 0.61 0.31 -0.3
126 AT4G08330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
hits to 98 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.32 -0.32
127 AT5G18180 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein -0.61 0.32 -0.31
128 AT1G62810 Copper amine oxidase family protein -0.61 0.3 -0.31
129 AT3G51330 Eukaryotic aspartyl protease family protein -0.61 0.31 -0.33
130 AT1G33612 Leucine-rich repeat (LRR) family protein -0.61 0.32 -0.32
131 AT5G64780 Uncharacterised conserved protein UCP009193 0.61 0.31 -0.31
132 AT1G69780 Homeobox-leucine zipper protein family ATHB13 0.61 0.31 -0.32
133 AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 POPEYE 0.61 0.31 -0.32
134 AT3G50120 Plant protein of unknown function (DUF247) 0.6 0.29 -0.32
135 AT5G66960 Prolyl oligopeptidase family protein -0.6 0.32 -0.32
136 AT1G37150 holocarboxylase synthetase 2 holocarboxylase synthetase 2 -0.6 0.31 -0.3
137 AT2G22180 hydroxyproline-rich glycoprotein family protein 0.6 0.3 -0.31
138 AT3G59010 pectin methylesterase 61 pectin methylesterase 61 0.6 0.32 -0.31
139 AT1G24010 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.6 0.33 -0.3
140 AT1G25360 Pentatricopeptide repeat (PPR) superfamily protein -0.6 0.3 -0.31
141 AT1G74600 pentatricopeptide (PPR) repeat-containing protein organelle transcript processing 87 -0.6 0.27 -0.33
142 AT2G43690 Concanavalin A-like lectin protein kinase family protein -0.6 0.31 -0.32
143 AT2G26120 glycine-rich protein -0.6 0.3 -0.33
144 AT1G20850 xylem cysteine peptidase 2 xylem cysteine peptidase 2 0.6 0.31 -0.29
145 AT5G10280 myb domain protein 92 ATMYB64, myb domain protein 92,
myb domain protein 92		 -0.6 0.34 -0.31
146 AT3G21550 DUF679 domain membrane protein 2 Arabidopsis thaliana DUF679 domain
membrane protein 2, DUF679 domain
membrane protein 2		 0.6 0.32 -0.31
147 AT3G43630 Vacuolar iron transporter (VIT) family protein -0.6 0.31 -0.31
148 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein -0.59 0.33 -0.32
149 AT5G05480 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.59 0.31 -0.31
150 AT5G53460 NADH-dependent glutamate synthase 1 NADH-dependent glutamate synthase
1		 -0.59 0.33 -0.32
151 AT3G05960 sugar transporter 6 SUGAR TRANSPORTER 6, sugar
transporter 6		 -0.59 0.33 -0.27
152 AT5G62480 glutathione S-transferase tau 9 glutathione S-transferase tau 9,
GLUTATHIONE S-TRANSFERASE 14,
GLUTATHIONE S-TRANSFERASE 14B,
glutathione S-transferase tau 9		 -0.59 0.32 -0.31
153 AT2G46850 Protein kinase superfamily protein -0.59 0.3 -0.32
154 AT1G49190 response regulator 19 response regulator 19, response
regulator 19		 -0.59 0.34 -0.31
155 AT1G68510 LOB domain-containing protein 42 LOB domain-containing protein 42 -0.59 0.32 -0.32
156 AT5G13680 IKI3 family protein ABA-OVERLY SENSITIVE 1, AtELP1,
ELONGATA 2		 -0.59 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
157 C0028 3-Aminopiperidin-2-one (R,S)-3-Aminopiperidin-2-one - - -0.63 0.31 -0.31