AT5G23890 : -
Query Information
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AGICode AT5G23890
Description LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G23890 LOCATED IN: mitochondrion, chloroplast thylakoid membrane,
chloroplast, plastid, chloroplast envelope; EXPRESSED IN:
24 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: S-layer homology domain
(InterPro:IPR001119); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G52410.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 1 0.3 -0.32
2 AT5G39570 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14
growth stages; BEST Arabidopsis thaliana protein match is:
glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.33 -0.34
3 AT2G30280 RNA-directed DNA methylation 4 DEFECTIVE IN MERISTEM SILENCING 4,
RNA-directed DNA methylation 4		 -0.71 0.32 -0.32
4 AT5G01810 CBL-interacting protein kinase 15 PROTEIN KINASE 10, CBL-interacting
protein kinase 15, PKS3,
SOS3-INTERACTING PROTEIN 2,
SNF1-RELATED PROTEIN KINASE 3.1		 0.71 0.3 -0.3
5 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 0.7 0.32 -0.31
6 AT4G03020 transducin family protein / WD-40 repeat family protein 0.69 0.32 -0.3
7 AT5G17190 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.69 0.33 -0.34
8 AT2G27285 Coiled-coil domain-containing protein 55 (DUF2040) 0.68 0.31 -0.31
9 AT4G39570 Galactose oxidase/kelch repeat superfamily protein -0.68 0.32 -0.3
10 AT1G43620 UDP-Glycosyltransferase superfamily protein TRANSPARENT TESTA 15, UGT80B1 0.67 0.33 -0.3
11 AT4G18610 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 9 -0.67 0.3 -0.3
12 AT5G15450 casein lytic proteinase B3 ALBINO AND PALE GREEN 6, AtCLPB3,
CASEIN LYTIC PROTEINASE B-P,
casein lytic proteinase B3		 0.67 0.35 -0.3
13 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.67 0.31 -0.31
14 AT5G37830 oxoprolinase 1 oxoprolinase 1 0.66 0.28 -0.32
15 AT3G12890 activator of spomin::LUC2 activator of spomin::LUC2 -0.66 0.31 -0.3
16 AT5G53250 arabinogalactan protein 22 arabinogalactan protein 22,
ARABINOGALACTAN PROTEIN 22		 -0.65 0.32 -0.32
17 AT1G62800 aspartate aminotransferase 4 aspartate aminotransferase 4 -0.65 0.31 -0.34
18 AT3G02885 GAST1 protein homolog 5 GAST1 protein homolog 5 -0.65 0.31 -0.32
19 AT4G13460 SU(VAR)3-9 homolog 9 SETDOMAIN GROUP 22, SET22,
SU(VAR)3-9 homolog 9		 0.64 0.32 -0.32
20 AT4G34100 RING/U-box superfamily protein 0.64 0.31 -0.3
21 AT5G51430 conserved oligomeric Golgi complex component-related / COG
complex component-related		 EMBRYO YELLOW 0.64 0.31 -0.31
22 AT1G69295 plasmodesmata callose-binding protein 4 plasmodesmata callose-binding
protein 4		 0.64 0.31 -0.32
23 AT1G13930 Involved in response to salt stress. Knockout mutants are
hypersensitive to salt stress.		 0.64 0.31 -0.32
24 AT1G03620 ELMO/CED-12 family protein -0.64 0.33 -0.31
25 AT5G02590 Tetratricopeptide repeat (TPR)-like superfamily protein 0.64 0.33 -0.3
26 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase -0.64 0.31 -0.32
27 AT1G53680 glutathione S-transferase TAU 28 glutathione S-transferase TAU 28,
glutathione S-transferase TAU 28		 -0.63 0.33 -0.33
28 AT4G40060 homeobox protein 16 ATHB-16, homeobox protein 16,
homeobox protein 16		 -0.63 0.31 -0.3
29 AT1G34770 CONTAINS InterPro DOMAIN/s: MAGE protein
(InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins
in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104;
Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76
(source: NCBI BLink).		 -0.63 0.32 -0.31
30 AT2G29080 FTSH protease 3 FTSH protease 3 0.62 0.31 -0.33
31 AT3G54000 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits
to 94 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.3 -0.31
32 AT5G53130 cyclic nucleotide gated channel 1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1,
cyclic nucleotide gated channel 1		 0.62 0.34 -0.32
33 AT3G20110 cytochrome P450, family 705, subfamily A, polypeptide 20 cytochrome P450, family 705,
subfamily A, polypeptide 20		 -0.62 0.3 -0.32
34 AT4G00416 methyl-CPG-binding domain 3 methyl-CPG-binding domain 3 -0.61 0.3 -0.31
35 AT4G09560 Protease-associated (PA) RING/U-box zinc finger family
protein		 0.61 0.3 -0.32
36 AT1G08670 ENTH/VHS family protein -0.61 0.34 -0.3
37 AT1G64180 intracellular protein transport protein USO1-related 0.61 0.31 -0.34
38 AT4G10730 Protein kinase superfamily protein 0.61 0.31 -0.32
39 AT2G35480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 9 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast
hits to 47 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.61 0.3 -0.32
40 AT5G20070 nudix hydrolase homolog 19 ARABIDOPSIS THALIANA NUDIX
HYDROLASE HOMOLOG 19, nudix
hydrolase homolog 19, nudix
hydrolase homolog 19		 0.6 0.33 -0.32
41 AT2G42810 protein phosphatase 5.2 Arabidopsis thaliana protein
phosphatase 5, PAPP5, PROTEIN
PHOSPHATASE 5, protein phosphatase
5.2		 -0.6 0.3 -0.31
42 AT1G35150 General transcription factor 2-related zinc finger protein 0.6 0.31 -0.32
43 AT5G54650 formin homology5 FORMIN HOMOLOGY 5, formin
homology5		 0.6 0.29 -0.33
44 AT5G56870 beta-galactosidase 4 beta-galactosidase 4 -0.6 0.33 -0.31
45 AT5G27200 acyl carrier protein 5 acyl carrier protein 5 -0.6 0.29 -0.33
46 AT2G33480 NAC domain containing protein 41 NAC domain containing protein 41,
NAC domain containing protein 41		 -0.59 0.3 -0.33
47 AT2G29330 tropinone reductase tropinone reductase -0.59 0.32 -0.31
48 AT4G37160 SKU5 similar 15 SKU5 similar 15 -0.59 0.32 -0.32
49 AT5G46190 RNA-binding KH domain-containing protein 0.59 0.3 -0.31
50 AT2G12230 pseudogene, C-1-tetrahydrofolate synthase, blastp match of
91% identity and 2.9e-07 P-value to
GP|9843502|emb|CAC03667.1||AL133260 dJ292B18.2 (novel
protein similar to methylenetetrahydrofolate dehydrogenase
(NADP+ dependent), methenyltetrahydrofolate cyclohydrolase,
formyltetrahydrofolate synthetase (MTHFD1) (EC 1.5.1.5, EC
3.5.4.9, EC-TRUNCATED-		 -0.59 0.31 -0.32
51 AT3G20910 nuclear factor Y, subunit A9 nuclear factor Y, subunit A9 0.59 0.31 -0.3
52 AT1G51440 alpha/beta-Hydrolases superfamily protein 0.59 0.28 -0.34
53 AT2G11220 transposable element gene 0.59 0.33 -0.33
54 AT2G10630 transposable element gene 0.58 0.3 -0.35
55 AT1G58270 TRAF-like family protein ZW9 0.58 0.32 -0.28
56 AT1G52470 alpha/beta-Hydrolases superfamily protein 0.58 0.3 -0.31
57 AT4G37610 BTB and TAZ domain protein 5 BTB and TAZ domain protein 5 -0.58 0.29 -0.31
58 AT4G26320 arabinogalactan protein 13 arabinogalactan protein 13 -0.58 0.31 -0.33
59 AT5G46460 Pentatricopeptide repeat (PPR) superfamily protein 0.58 0.29 -0.31
60 AT4G10240 B-box zinc finger family protein 0.57 0.31 -0.29
61 AT1G63900 E3 Ubiquitin ligase family protein DIAP1-like protein 1 0.57 0.31 -0.33
62 AT1G65280 DNAJ heat shock N-terminal domain-containing protein 0.57 0.3 -0.31
63 AT1G64480 calcineurin B-like protein 8 calcineurin B-like protein 8 -0.57 0.32 -0.3
64 AT5G63320 nuclear protein X1 nuclear protein X1 0.57 0.3 -0.33
65 AT5G08090 unknown protein; Has 13 Blast hits to 13 proteins in 8
species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 2;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.31 -0.32
66 AT3G14750 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits
to 3091 proteins in 519 species: Archae - 61; Bacteria -
669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses -
4; Other Eukaryotes - 1123 (source: NCBI BLink).		 -0.56 0.29 -0.31
67 AT3G28910 myb domain protein 30 ATMYB30, myb domain protein 30 -0.56 0.33 -0.3
68 AT3G03190 glutathione S-transferase F11 glutathione S-transferase F11,
ARABIDOPSIS
GLUTATHIONE-S-TRANSFERASE 6,
glutathione S-transferase F11		 -0.56 0.31 -0.3
69 AT3G52360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G35850.1); Has 34 Blast
hits to 34 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.3 -0.34
70 AT4G19660 NPR1-like protein 4 ATNPR4, NPR1-like protein 4 -0.55 0.3 -0.3
71 AT5G54130 Calcium-binding endonuclease/exonuclease/phosphatase family -0.55 0.32 -0.31
72 AT2G16230 O-Glycosyl hydrolases family 17 protein -0.55 0.34 -0.32
73 AT5G04770 cationic amino acid transporter 6 ARABIDOPSIS THALIANA CATIONIC
AMINO ACID TRANSPORTER 6, cationic
amino acid transporter 6		 -0.55 0.31 -0.33
74 AT3G06080 Plant protein of unknown function (DUF828) TRICHOME BIREFRINGENCE-LIKE 10 -0.55 0.3 -0.31
75 AT4G04955 allantoinase allantoinase, allantoinase -0.55 0.31 -0.31
76 AT5G51470 Auxin-responsive GH3 family protein -0.55 0.3 -0.3
77 AT5G54200 Transducin/WD40 repeat-like superfamily protein -0.55 0.31 -0.31
78 AT5G17350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.54 0.32 -0.31
79 AT5G59990 CCT motif family protein -0.54 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
80 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - 0.75 0.46 -0.46