AT5G23405 : -
Query Information
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AGICode AT5G23405
Description HMG-box (high mobility group) DNA-binding family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G23405 HMG-box (high mobility group) DNA-binding family protein 1 0.32 -0.33
2 AT3G23460 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.65 0.32 -0.34
3 AT1G10640 Pectin lyase-like superfamily protein -0.64 0.32 -0.32
4 AT5G16570 glutamine synthetase 1;4 glutamine synthetase 1;4 -0.64 0.32 -0.33
5 AT5G17420 Cellulose synthase family protein ATCESA7, CELLULOSE SYNTHASE
CATALYTIC SUBUNIT 7, IRREGULAR
XYLEM 3, MURUS 10		 -0.63 0.3 -0.31
6 AT4G10510 Subtilase family protein -0.63 0.35 -0.3
7 AT1G51730 Ubiquitin-conjugating enzyme family protein 0.63 0.29 -0.33
8 AT1G30440 Phototropic-responsive NPH3 family protein -0.61 0.33 -0.32
9 AT3G16770 ethylene-responsive element binding protein ethylene-responsive element
binding protein,
ethylene-responsive element
binding protein, ETHYLENE RESPONSE
FACTOR 72, RELATED TO AP2 3		 0.61 0.33 -0.31
10 AT3G61970 AP2/B3-like transcriptional factor family protein NGATHA2 -0.61 0.31 -0.32
11 AT5G10970 C2H2 and C2HC zinc fingers superfamily protein -0.6 0.3 -0.31
12 AT3G05670 RING/U-box protein -0.6 0.34 -0.3
13 AT1G41770 transposable element gene -0.59 0.35 -0.31
14 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.59 0.31 -0.29
15 AT2G31810 ACT domain-containing small subunit of acetolactate
synthase protein		 0.59 0.31 -0.3
16 AT5G14800 pyrroline-5- carboxylate (P5C) reductase AT-P5C1, PYRROLINE-5- CARBOXYLATE
(P5C) REDUCTASE, EMBRYO DEFECTIVE
2772, pyrroline-5- carboxylate
(P5C) reductase		 0.59 0.31 -0.31
17 AT5G55910 D6 protein kinase D6 protein kinase -0.59 0.31 -0.33
18 AT1G08190 vacuolar protein sorting 41 ATVAM2, VACUOLAR PROTEIN SORTING
41, VAM2, vacuolar protein sorting
41, ZIGZAG SUPPRESSOR 2		 -0.59 0.31 -0.32
19 AT3G61630 cytokinin response factor 6 cytokinin response factor 6 0.58 0.29 -0.3
20 AT5G19950 Domain of unknown function (DUF1767) 0.58 0.32 -0.34
21 AT5G38700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, LP.10 ten leaves
visible, petal differentiation and expansion stage, LP.08
eight leaves visible, LP.12 twelve leaves visible; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.31 -0.3
22 AT2G20750 expansin B1 expansin B1, ATHEXP BETA 1.5,
expansin B1		 -0.57 0.31 -0.31
23 AT4G35290 glutamate receptor 2 ATGLR3.2, ATGLUR2, GLUTAMATE
RECEPTOR 3.2, glutamate receptor 2		 -0.56 0.3 -0.31
24 AT3G13980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits
to 418 proteins in 98 species: Archae - 0; Bacteria - 6;
Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other
Eukaryotes - 1059 (source: NCBI BLink).		 -0.56 0.31 -0.31
25 AT5G11930 Thioredoxin superfamily protein -0.56 0.31 -0.33
26 AT3G50150 Plant protein of unknown function (DUF247) -0.56 0.3 -0.31
27 AT3G29760 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.56 0.31 -0.32
28 AT5G05390 laccase 12 laccase 12 -0.55 0.32 -0.32
29 AT4G27430 COP1-interacting protein 7 COP1-interacting protein 7 -0.54 0.34 -0.31
30 AT5G28440 unknown protein -0.54 0.32 -0.3
31 AT4G24210 F-box family protein SLEEPY1 0.54 0.33 -0.34
32 AT5G57655 xylose isomerase family protein 0.54 0.32 -0.32
33 AT5G07770 Actin-binding FH2 protein -0.53 0.32 -0.31
34 AT1G78710 TRICHOME BIREFRINGENCE-LIKE 42 TRICHOME BIREFRINGENCE-LIKE 42 0.53 0.32 -0.33
35 AT3G60200 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G44600.1); Has 60 Blast hits
to 60 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 8; Fungi - 0; Plants - 51; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 0.53 0.31 -0.31
36 AT2G15720 transposable element gene -0.53 0.33 -0.34
37 AT1G19610 Arabidopsis defensin-like protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
78, PDF1.4		 0.53 0.33 -0.31
38 AT3G49640 Aldolase-type TIM barrel family protein 0.53 0.32 -0.33
39 AT5G14960 DP-E2F-like 2 DP-E2F-like 2, E2FD, E2L1 -0.52 0.32 -0.3
40 AT5G54410 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.52 0.33 -0.32
41 AT4G30940 BTB/POZ domain with WD40/YVTN repeat-like protein -0.52 0.33 -0.32
42 AT4G33330 plant glycogenin-like starch initiation protein 3 glucuronic acid substitution of
xylan 2, plant glycogenin-like
starch initiation protein 3		 -0.52 0.32 -0.32
43 AT1G73370 sucrose synthase 6 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 6, sucrose synthase 6		 -0.52 0.28 -0.31
44 AT3G24715 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.51 0.31 -0.31
45 AT5G45890 senescence-associated gene 12 senescence-associated gene 12 -0.51 0.31 -0.33
46 AT5G11180 glutamate receptor 2.6 ARABIDOPSIS THALIANA GLUTAMATE
RECEPTOR 2.6, glutamate receptor
2.6		 -0.51 0.33 -0.31
47 AT1G07180 alternative NAD(P)H dehydrogenase 1 ARABIDOPSIS THALIANA INTERNAL
NON-PHOSPHORYLATING NAD ( P ) H
DEHYDROGENASE, alternative
NAD(P)H dehydrogenase 1		 -0.51 0.32 -0.32
48 AT5G40270 HD domain-containing metal-dependent phosphohydrolase
family protein		 -0.51 0.34 -0.32
49 AT3G27350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast
hits to 202 proteins in 35 species: Archae - 0; Bacteria -
3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.51 0.32 -0.29
50 AT1G72740 Homeodomain-like/winged-helix DNA-binding family protein 0.5 0.32 -0.33
51 AT1G08135 cation/H+ exchanger 6B ATCHX6B, cation/H+ exchanger 6B -0.5 0.32 -0.31
52 AT2G34340 Protein of unknown function, DUF584 0.5 0.3 -0.33
53 AT2G39640 glycosyl hydrolase family 17 protein -0.5 0.31 -0.29
54 AT2G28330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits
to 18 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.49 0.3 -0.32
55 AT5G46670 Cysteine/Histidine-rich C1 domain family protein -0.49 0.31 -0.33
56 AT5G48060 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.49 0.3 -0.32
57 AT4G14610 pseudogene, disease resistance protein (CC-NBS-LRR class),
putative, domain signature CC-NBS-LRR exists, suggestive of
a disease resistance protein.; blastp match of 45% identity
and 2.2e-162 P-value to
GP|24461866|gb|AAN62353.1|AF506028_20|AF506028 NBS-LRR type
disease resistance protein {Poncirus trifoliata}		 0.49 0.31 -0.31
58 AT2G35320 EYES ABSENT homolog EYES ABSENT homolog, EYES ABSENT
homolog		 0.49 0.33 -0.32
59 AT5G15680 ARM repeat superfamily protein -0.49 0.3 -0.32
60 AT4G09880 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.49 0.32 -0.3
61 AT5G08450 CONTAINS InterPro DOMAIN/s: Histone deacetylation protein
Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801
proteins in 1175 species: Archae - 64; Bacteria - 2390;
Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses -
208; Other Eukaryotes - 10599 (source: NCBI BLink).		 -0.49 0.29 -0.35
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
62 C0174 MST_2370.2 - - - -0.74 0.44 -0.45
63 C0092 Fumaric acid - Fumarate citrulline-nitric oxide cycle,
succinate + a ubiquinone -> a ubiquinol + fumarate,
superpathway of glyoxylate cycle and fatty acid degradation,
tyrosine degradation I,
aerobic respiration (alternative oxidase pathway),
inosine-5'-phosphate biosynthesis II,
arginine biosynthesis I,
TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
purine nucleotides de novo biosynthesis II,
arginine biosynthesis II (acetyl cycle),
urea cycle,
aerobic respiration (cytochrome c) 		-0.68 0.31 -0.31 C0092
64 C0240 Stigmasterol - Stigmasterol plant sterol biosynthesis -0.67 0.45 -0.43 C0240
65 C0098 Glucose D-Glucose alpha-D-glucose; beta-D-glucose trehalose degradation II (trehalase),
indole glucosinolate breakdown (active in intact plant cell),
coumarin biosynthesis (via 2-coumarate),
glucosinolate biosynthesis from tryptophan,
sinapate ester biosynthesis,
GDP-glucose biosynthesis,
coniferin metabolism,
melibiose degradation,
indole glucosinolate breakdown (insect chewing induced) 		-0.67 0.3 -0.31 C0098
66 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		-0.65 0.44 -0.45 C0233
67 C0185 MST_3139.9 - - - 0.63 0.44 -0.46
68 C0212 PR_MST_2336.8 - - - -0.63 0.4 -0.42