AT5G16630 : ATRAD4
Query Information
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AGICode AT5G16630
Description DNA repair protein Rad4 family
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G16630 DNA repair protein Rad4 family ATRAD4, RAD4 1 0.33 -0.33
2 AT3G05640 Protein phosphatase 2C family protein 0.82 0.35 -0.3
3 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 0.81 0.31 -0.31
4 AT1G17550 homology to ABI2 homology to ABI2 0.81 0.32 -0.32
5 AT4G18800 RAB GTPase homolog A1D ATHSGBP, ATRAB11B, RAB GTPase
homolog A1D, RAB GTPase homolog
A1D		 -0.79 0.28 -0.3
6 AT5G45480 Protein of unknown function (DUF594) -0.77 0.33 -0.3
7 AT4G36670 Major facilitator superfamily protein AtPLT6, AtPMT6, polyol transporter
6, polyol/monosaccharide
transporter 6		 -0.76 0.32 -0.32
8 AT2G43050 Plant invertase/pectin methylesterase inhibitor superfamily ATPMEPCRD -0.76 0.32 -0.32
9 AT4G38350 Patched family protein 0.76 0.31 -0.31
10 AT3G09770 RING/U-box superfamily protein LOSS OF GDU 2 0.76 0.29 -0.32
11 AT2G32380 Transmembrane protein 97, predicted -0.76 0.32 -0.33
12 AT4G35790 phospholipase D delta ARABIDOPSIS THALIANA PHOSPHOLIPASE
D DELTA, phospholipase D delta		 0.75 0.32 -0.31
13 AT5G50920 CLPC homologue 1 ATHSP93-V, CLPC, CLPC homologue 1,
DE-REGULATED CAO ACCUMULATION 1,
HEAT SHOCK PROTEIN 93-V		 0.75 0.32 -0.32
14 AT2G32090 Lactoylglutathione lyase / glyoxalase I family protein 0.75 0.32 -0.32
15 AT1G12010 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.75 0.31 -0.32
16 AT5G48150 GRAS family transcription factor phytochrome a signal transduction
1		 0.75 0.32 -0.29
17 AT1G04830 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.75 0.34 -0.3
18 AT2G39390 Ribosomal L29 family protein -0.74 0.32 -0.32
19 AT1G31750 proline-rich family protein 0.73 0.31 -0.29
20 AT4G32770 tocopherol cyclase, chloroplast / vitamin E deficient 1
(VTE1) / sucrose export defective 1 (SXD1)		 SUCROSE EXPORT DEFECTIVE 1,
VITAMIN E DEFICIENT 1		 0.73 0.32 -0.32
21 AT1G14980 chaperonin 10 chaperonin 10 -0.73 0.32 -0.32
22 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 0.73 0.31 -0.32
23 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 0.72 0.33 -0.31
24 AT1G73390 Endosomal targeting BRO1-like domain-containing protein 0.72 0.33 -0.35
25 AT5G42970 Proteasome component (PCI) domain protein ATS4, CONSTITUTIVE
PHOTOMORPHOGENIC 14, CONSTITUTIVE
PHOTOMORPHOGENIC 8, COP9
SIGNALOSOME SUBUNIT 4, EMBRYO
DEFECTIVE 134, FUSCA 4, FUSCA 8		 -0.72 0.31 -0.3
26 AT3G01560 Protein of unknown function (DUF1421) 0.72 0.3 -0.32
27 AT4G20780 calmodulin like 42 calmodulin like 42 -0.71 0.31 -0.3
28 AT2G37130 Peroxidase superfamily protein -0.71 0.32 -0.32
29 AT3G07270 GTP cyclohydrolase I -0.71 0.32 -0.32
30 AT5G22290 NAC domain containing protein 89 NAC domain containing protein 89,
fructose-sensing quantitative
trait locus 6, NAC domain
containing protein 89		 0.71 0.33 -0.31
31 AT5G12140 cystatin-1 cystatin-1, cystatin-1 0.71 0.31 -0.33
32 AT4G36880 cysteine proteinase1 cysteine proteinase1 -0.71 0.33 -0.32
33 AT4G26780 Co-chaperone GrpE family protein AR192, mitochondrial GrpE 2 -0.71 0.31 -0.3
34 AT5G16550 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.71 0.31 -0.32
35 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 -0.71 0.31 -0.3
36 AT2G28420 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 8 0.71 0.32 -0.29
37 AT3G50740 UDP-glucosyl transferase 72E1 UDP-glucosyl transferase 72E1 -0.71 0.32 -0.31
38 AT1G69260 ABI five binding protein ABI five binding protein 0.7 0.33 -0.33
39 AT1G27150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.7 0.31 -0.32
40 AT2G44370 Cysteine/Histidine-rich C1 domain family protein -0.7 0.32 -0.31
41 AT5G64000 Inositol monophosphatase family protein ATSAL2, SAL2 -0.7 0.3 -0.32
42 AT4G00450 RNA polymerase II transcription mediators CENTER CITY, CRYPTIC PRECOCIOUS 0.7 0.31 -0.32
43 AT5G01670 NAD(P)-linked oxidoreductase superfamily protein 0.7 0.33 -0.31
44 AT1G07960 PDI-like 5-1 PDI-like 5-1, PDI-like 5-1 -0.7 0.34 -0.31
45 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.7 0.3 -0.31
46 AT4G17070 peptidyl-prolyl cis-trans isomerases -0.7 0.31 -0.29
47 AT5G58030 Transport protein particle (TRAPP) component -0.7 0.32 -0.31
48 AT3G14840 Leucine-rich repeat transmembrane protein kinase -0.7 0.35 -0.3
49 AT1G30370 alpha/beta-Hydrolases superfamily protein DAD1-like acylhydrolase -0.7 0.32 -0.31
50 AT5G63180 Pectin lyase-like superfamily protein -0.69 0.32 -0.33
51 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 -0.69 0.31 -0.31
52 AT1G22690 Gibberellin-regulated family protein -0.69 0.31 -0.31
53 AT4G12480 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 EARLY ARABIDOPSIS ALUMINUM INDUCED
1, pEARLI 1		 -0.69 0.31 -0.3
54 AT2G22240 myo-inositol-1-phosphate synthase 2 INOSITOL 3-PHOSPHATE SYNTHASE 2,
MYO-INOSITOL-1-PHOSTPATE SYNTHASE
2, myo-inositol-1-phosphate
synthase 2		 0.69 0.32 -0.33
55 AT1G68490 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.69 0.33 -0.3
56 AT1G09815 polymerase delta 4 polymerase delta 4 -0.69 0.31 -0.32
57 AT5G20050 Protein kinase superfamily protein -0.69 0.32 -0.33
58 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 -0.69 0.31 -0.33
59 AT1G02205 Fatty acid hydroxylase superfamily ECERIFERUM 1 0.69 0.33 -0.32
60 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.69 0.33 -0.31
61 AT5G60140 AP2/B3-like transcriptional factor family protein -0.69 0.31 -0.3
62 AT1G51790 Leucine-rich repeat protein kinase family protein -0.69 0.32 -0.32
63 AT3G09020 alpha 1,4-glycosyltransferase family protein -0.68 0.31 -0.31
64 AT5G56260 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 -0.68 0.3 -0.31
65 AT1G78460 SOUL heme-binding family protein -0.68 0.31 -0.31
66 AT5G22850 Eukaryotic aspartyl protease family protein 0.68 0.3 -0.33
67 AT4G33240 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion
binding;1-phosphatidylinositol-3-phosphate 5-kinases		 FORMS APLOID AND BINUCLEATE CELLS
1A		 0.68 0.3 -0.32
68 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.31 -0.32
69 AT2G36640 embryonic cell protein 63 embryonic cell protein 63,
embryonic cell protein 63		 0.68 0.29 -0.35
70 AT2G25650 DNA-binding storekeeper protein-related transcriptional
regulator		 0.68 0.31 -0.29
71 AT5G50890 alpha/beta-Hydrolases superfamily protein -0.68 0.3 -0.31
72 AT4G25140 oleosin 1 OLEOSIN 1, oleosin 1 0.68 0.3 -0.32
73 AT3G14595 Ribosomal protein L18ae family 0.68 0.3 -0.29
74 AT5G01990 Auxin efflux carrier family protein 0.68 0.3 -0.32
75 AT1G07250 UDP-glucosyl transferase 71C4 UDP-glucosyl transferase 71C4 0.68 0.32 -0.32
76 AT4G37760 squalene epoxidase 3 squalene epoxidase 3 0.68 0.33 -0.3
77 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 -0.68 0.3 -0.33
78 AT4G25110 metacaspase 2 metacaspase 2, metacaspase 1c,
metacaspase 2, metacaspase 1c		 -0.68 0.32 -0.32
79 AT1G77750 Ribosomal protein S13/S18 family -0.68 0.31 -0.3
80 AT5G51210 oleosin3 oleosin3 0.68 0.31 -0.3
81 AT3G49100 Signal recognition particle, SRP9/SRP14 subunit -0.67 0.33 -0.3
82 AT1G14810 semialdehyde dehydrogenase family protein -0.67 0.34 -0.33
83 AT2G11140 transposable element gene -0.67 0.31 -0.32
84 AT2G44120 Ribosomal protein L30/L7 family protein -0.67 0.31 -0.31
85 AT2G44380 Cysteine/Histidine-rich C1 domain family protein -0.67 0.31 -0.32
86 AT3G21080 ABC transporter-related -0.67 0.28 -0.31
87 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 0.67 0.32 -0.33
88 AT3G20430 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA
export protein, RNA-binding domain (InterPro:IPR019385);
Has 110 Blast hits to 110 proteins in 51 species: Archae -
0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36;
Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).		 -0.67 0.3 -0.32
89 AT4G11290 Peroxidase superfamily protein -0.67 0.3 -0.32
90 AT5G43810 Stabilizer of iron transporter SufD / Polynucleotidyl
transferase		 ARGONAUTE 10, PINHEAD, ZWILLE 0.67 0.32 -0.29
91 AT1G01240 unknown protein; INVOLVED IN: N-terminal protein
myristoylation; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G46550.1); Has 95 Blast hits to 78 proteins in 16
species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 0;
Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.67 0.31 -0.3
92 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A		 -0.67 0.29 -0.33
93 AT4G18430 RAB GTPase homolog A1E RAB GTPase homolog A1E, RAB GTPase
homolog A1E		 -0.67 0.34 -0.33
94 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.29 -0.32
95 AT1G02080 transcription regulators 0.67 0.33 -0.31
96 AT2G27775 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
Tetratricopeptide repeat (TPR)-like superfamily protein
(TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.31 -0.33
97 AT3G01570 Oleosin family protein 0.67 0.28 -0.31
98 AT3G14310 pectin methylesterase 3 pectin methylesterase 3, pectin
methylesterase 3		 -0.67 0.31 -0.34
99 AT1G03210 Phenazine biosynthesis PhzC/PhzF protein -0.67 0.32 -0.31
100 AT1G28260 Telomerase activating protein Est1 0.67 0.32 -0.3
101 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.67 0.3 -0.32
102 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 -0.67 0.31 -0.33
103 AT3G22480 prefoldin 2 prefoldin 2 -0.67 0.31 -0.34
104 AT2G17630 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.67 0.3 -0.3
105 AT1G55510 branched-chain alpha-keto acid decarboxylase E1 beta
subunit		 branched-chain alpha-keto acid
decarboxylase E1 beta subunit		 0.66 0.32 -0.31
106 AT2G33600 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.34 -0.32
107 AT5G28630 glycine-rich protein -0.66 0.3 -0.32
108 AT2G25680 molybdate transporter 1 molybdate transporter 1 -0.66 0.31 -0.31
109 AT5G49990 Xanthine/uracil permease family protein 0.66 0.34 -0.3
110 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 0.66 0.31 -0.32
111 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 -0.66 0.3 -0.32
112 AT2G26690 Major facilitator superfamily protein 0.66 0.31 -0.33
113 AT1G17250 receptor like protein 3 receptor like protein 3, receptor
like protein 3		 -0.66 0.3 -0.31
114 AT4G24560 ubiquitin-specific protease 16 ubiquitin-specific protease 16 0.66 0.29 -0.31
115 AT3G43740 Leucine-rich repeat (LRR) family protein -0.66 0.31 -0.31
116 AT1G57620 emp24/gp25L/p24 family/GOLD family protein -0.66 0.31 -0.31
117 AT1G20770 unknown protein; Has 59 Blast hits to 59 proteins in 24
species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4;
Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.32 -0.32
118 AT1G55460 DNA/RNA-binding protein Kin17, conserved region 0.65 0.3 -0.33
119 AT5G62090 SEUSS-like 2 SEUSS-like 2 0.65 0.28 -0.31
120 AT1G05300 zinc transporter 5 precursor zinc transporter 5 precursor -0.65 0.31 -0.31
121 AT3G26320 cytochrome P450, family 71, subfamily B, polypeptide 36 cytochrome P450, family 71,
subfamily B, polypeptide 36		 -0.65 0.31 -0.32
122 AT5G19420 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 0.65 0.31 -0.31
123 AT5G65970 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 10,
MILDEW RESISTANCE LOCUS O 10		 -0.65 0.28 -0.31
124 AT1G79400 cation/H+ exchanger 2 cation/H+ exchanger 2, cation/H+
exchanger 2		 -0.65 0.32 -0.29
125 AT3G05510 Phospholipid/glycerol acyltransferase family protein 0.65 0.31 -0.3
126 AT4G16160 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-2, ATOEP16-S 0.65 0.32 -0.3
127 AT5G14510 ARM repeat superfamily protein 0.65 0.33 -0.31
128 AT5G20380 phosphate transporter 4;5 phosphate transporter 4;5 0.65 0.34 -0.33
129 AT3G26230 cytochrome P450, family 71, subfamily B, polypeptide 24 cytochrome P450, family 71,
subfamily B, polypeptide 24		 -0.65 0.32 -0.35
130 AT3G01310 Phosphoglycerate mutase-like family protein 0.65 0.33 -0.32
131 AT5G07920 diacylglycerol kinase1 DIACYLGLYCEROL KINASE 1,
diacylglycerol kinase1		 0.65 0.31 -0.31
132 AT2G42850 cytochrome P450, family 718 cytochrome P450, family 718 -0.64 0.33 -0.31
133 AT4G16265 RNA polymerases M/15 Kd subunit NRPB9B, NRPD9B, NRPE9B -0.64 0.31 -0.31
134 AT1G57560 myb domain protein 50 myb domain protein 50, myb domain
protein 50		 -0.64 0.31 -0.32
135 AT5G42860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G45688.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.64 0.31 -0.31
136 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.64 0.32 -0.32
137 AT5G08160 serine/threonine protein kinase 3 serine/threonine protein kinase 3,
serine/threonine protein kinase 3		 -0.64 0.31 -0.31
138 AT4G16750 Integrase-type DNA-binding superfamily protein 0.64 0.3 -0.31
139 AT2G41280 late embryogenesis abundant protein (M10) / LEA protein M10 ATM10, M10 0.64 0.33 -0.32
140 AT5G44670 Domain of unknown function (DUF23) 0.64 0.33 -0.33
141 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.64 0.32 -0.32
142 AT2G19385 zinc ion binding -0.64 0.33 -0.35
143 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.64 0.33 -0.29
144 AT4G34040 RING/U-box superfamily protein 0.64 0.3 -0.34
145 AT1G22310 methyl-CPG-binding domain 8 ATMBD8, methyl-CPG-binding domain
8		 0.64 0.3 -0.32
146 AT3G27230 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.31 -0.32
147 AT2G27660 Cysteine/Histidine-rich C1 domain family protein -0.64 0.3 -0.32
148 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 0.64 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
149 C0189 Nicotinic acid - Nicotinate pyridine nucleotide cycling (plants),
aldoxime degradation 		0.66 0.31 -0.33 C0189