AT5G16440 : isopentenyl diphosphate isomerase 1
Query Information
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AGICode AT5G16440
Description isopentenyl diphosphate isomerase 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G16440 isopentenyl diphosphate isomerase 1 isopentenyl diphosphate isomerase
1		 1 0.32 -0.32
2 AT1G05950 unknown protein; Has 50 Blast hits to 45 proteins in 14
species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.87 0.32 -0.31
3 AT3G27430 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 PBB1 0.84 0.33 -0.33
4 AT5G47200 RAB GTPase homolog 1A RAB GTPase homolog 1A, ARABIDOPSIS
RAB GTPASE HOMOLOG D2B, RAB GTPase
homolog 1A		 0.84 0.33 -0.31
5 AT5G40580 20S proteasome beta subunit PBB2 20S proteasome beta subunit PBB2 0.83 0.33 -0.34
6 AT4G13790 SAUR-like auxin-responsive protein family 0.82 0.34 -0.31
7 AT2G35010 thioredoxin O1 thioredoxin O1, thioredoxin O1 0.82 0.32 -0.31
8 AT2G47470 thioredoxin family protein ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 11, PDI-LIKE
2-1, MATERNAL EFFECT EMBRYO ARREST
30, PROTEIN DISULFIDE ISOMERASE
11, UNFERTILIZED EMBRYO SAC 5		 0.82 0.32 -0.29
9 AT1G49520 SWIB complex BAF60b domain-containing protein 0.82 0.34 -0.31
10 AT3G22290 Endoplasmic reticulum vesicle transporter protein 0.81 0.32 -0.3
11 AT3G11780 MD-2-related lipid recognition domain-containing protein /
ML domain-containing protein		 0.81 0.31 -0.32
12 AT4G20330 Transcription initiation factor TFIIE, beta subunit 0.81 0.31 -0.32
13 AT4G27320 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS34, PHOS34 0.81 0.32 -0.31
14 AT1G79210 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
superfamily protein		 0.81 0.31 -0.33
15 AT5G40660 ATP12 protein-related 0.8 0.34 -0.32
16 AT3G17710 F-box and associated interaction domains-containing protein 0.8 0.31 -0.33
17 AT3G22630 20S proteasome beta subunit D1 20S proteasome beta subunit D1,
PRCGB		 0.8 0.32 -0.32
18 AT5G42790 proteasome alpha subunit F1 ARSENIC TOLERANCE 5, ATPSM30,
proteasome alpha subunit F1		 0.8 0.31 -0.33
19 AT3G09810 isocitrate dehydrogenase VI isocitrate dehydrogenase VI 0.8 0.33 -0.31
20 AT3G19300 Protein kinase superfamily protein -0.8 0.29 -0.32
21 AT5G11230 Nucleotide-sugar transporter family protein 0.79 0.33 -0.33
22 AT5G22360 vesicle-associated membrane protein 714 vesicle-associated membrane
protein 714, VAMP714,
vesicle-associated membrane
protein 714		 0.79 0.3 -0.32
23 AT3G17100 sequence-specific DNA binding transcription factors 0.79 0.31 -0.3
24 AT4G35860 GTP-binding 2 GTP-binding 2, ATRAB2C, ATRABB1B,
GTP-binding 2		 0.79 0.31 -0.31
25 AT3G03740 BTB-POZ and MATH domain 4 BTB-POZ AND MATH DOMAIN 4, BTB-POZ
and MATH domain 4		 0.79 0.31 -0.32
26 AT5G58290 regulatory particle triple-A ATPase 3 regulatory particle triple-A
ATPase 3		 0.78 0.31 -0.32
27 AT3G52560 ubiquitin E2 variant 1D-4 MMS2 ZWEI HOMOLOGUE 4, UBIQUITIN
E2 VARIANT 1D, ubiquitin E2
variant 1D-4		 0.78 0.31 -0.32
28 AT3G46460 ubiquitin-conjugating enzyme 13 ubiquitin-conjugating enzyme 13 0.78 0.31 -0.32
29 AT2G45140 plant VAP homolog 12 plant VAP homolog 12 0.78 0.31 -0.29
30 AT3G02780 isopentenyl pyrophosphate:dimethylallyl pyrophosphate
isomerase 2		 ATISOPENTENYL DIPHOSPHE ISOMERASE
2, IPIAT1, isopentenyl
pyrophosphate:dimethylallyl
pyrophosphate isomerase 2		 0.78 0.35 -0.31
31 AT1G71190 senescence associated gene 18 senescence associated gene 18 0.78 0.33 -0.32
32 AT3G22845 emp24/gp25L/p24 family/GOLD family protein 0.78 0.31 -0.3
33 AT5G32440 Ubiquitin system component Cue protein 0.78 0.27 -0.31
34 AT3G51480 glutamate receptor 3.6 glutamate receptor 3.6, GLR3.6,
glutamate receptor 3.6		 -0.78 0.32 -0.32
35 AT1G68140 Protein of unknown function (DUF1644) 0.77 0.3 -0.32
36 AT1G25370 Protein of unknown function (DUF1639) 0.77 0.32 -0.3
37 AT2G45060 Uncharacterised conserved protein UCP022280 0.77 0.31 -0.32
38 AT1G11070 BEST Arabidopsis thaliana protein match is:
Hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in
152 species: Archae - 0; Bacteria - 68; Metazoa - 159;
Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes -
67 (source: NCBI BLink).		 -0.77 0.31 -0.31
39 AT4G28080 Tetratricopeptide repeat (TPR)-like superfamily protein -0.77 0.31 -0.31
40 AT5G40060 Disease resistance protein (NBS-LRR class) family -0.77 0.33 -0.32
41 AT1G54090 exocyst subunit exo70 family protein D2 exocyst subunit exo70 family
protein D2, exocyst subunit exo70
family protein D2		 0.77 0.3 -0.31
42 AT5G54430 Adenine nucleotide alpha hydrolases-like superfamily
protein		 ATPHOS32, PHOS32 0.77 0.32 -0.34
43 AT3G03100 NADH:ubiquinone oxidoreductase, 17.2kDa subunit 0.77 0.32 -0.31
44 AT5G04170 Calcium-binding EF-hand family protein 0.77 0.34 -0.32
45 AT5G59140 BTB/POZ domain-containing protein 0.76 0.36 -0.31
46 AT5G52240 membrane steroid binding protein 1 ARABIDOPSIS THALIANA
MEMBRANE-ASSOCIATED PROGESTERONE
BINDING PROTEIN 5, ATMP1, membrane
steroid binding protein 1		 0.76 0.32 -0.33
47 AT2G38360 prenylated RAB acceptor 1.B4 prenylated RAB acceptor 1.B4 0.76 0.34 -0.32
48 AT3G10160 DHFS-FPGS homolog C A. THALIANA DHFS-FPGS HOMOLOG C,
DHFS-FPGS homolog C,
folylpolyglutamate synthetase 2		 -0.76 0.33 -0.32
49 AT1G04050 homolog of SU(var)3-9 1 SET DOMAIN PROTEIN 13, homolog of
SU(var)3-9 1		 -0.76 0.29 -0.32
50 AT2G42410 zinc finger protein 11 ZINC FINGER PROTEIN 11, zinc
finger protein 11		 -0.76 0.3 -0.31
51 AT2G35600 BREVIS RADIX-like 1 ARABIDOPSIS THALIANA BREVIS RADIX
LIKE 1, BREVIS RADIX-like 1		 -0.76 0.31 -0.31
52 AT5G03030 Chaperone DnaJ-domain superfamily protein 0.76 0.32 -0.33
53 AT5G03700 D-mannose binding lectin protein with Apple-like
carbohydrate-binding domain		 0.76 0.31 -0.31
54 AT2G20820 unknown protein; Has 44 Blast hits to 44 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.76 0.33 -0.31
55 AT1G35670 calcium-dependent protein kinase 2 calcium-dependent protein kinase
2, ATCPK11, calcium-dependent
protein kinase 2, CPK11		 0.75 0.33 -0.3
56 AT1G16680 Chaperone DnaJ-domain superfamily protein -0.75 0.33 -0.31
57 AT2G37550 ARF-GAP domain 7 ARF-GAP domain 7, yeast pde1
suppressor 1		 0.75 0.31 -0.33
58 AT1G63100 GRAS family transcription factor -0.75 0.31 -0.3
59 AT1G24050 RNA-processing, Lsm domain 0.75 0.33 -0.31
60 AT5G52210 GTP-binding protein 1 ATARLB1, GTP-binding protein 1,
GTP-binding protein 1		 0.75 0.32 -0.32
61 AT3G25690 Hydroxyproline-rich glycoprotein family protein Arabidopsis thaliana CHLOROPLAST
UNUSUAL POSITIONING 1, CHLOROPLAST
UNUSUAL POSITIONING 1		 -0.75 0.31 -0.3
62 AT1G04750 vesicle-associated membrane protein 721 AT VAMP7B, ATVAMP721,
vesicle-associated membrane
protein 721, VESICLE-ASSOCIATED
MEMBRANE PROTEIN 7B		 0.75 0.31 -0.33
63 AT1G74180 receptor like protein 14 receptor like protein 14, receptor
like protein 14		 -0.75 0.31 -0.33
64 AT3G28080 nodulin MtN21 /EamA-like transporter family protein -0.75 0.32 -0.31
65 AT4G14490 SMAD/FHA domain-containing protein -0.75 0.31 -0.31
66 AT1G71810 Protein kinase superfamily protein -0.75 0.29 -0.32
67 AT4G32040 KNOTTED1-like homeobox gene 5 KNOTTED1-like homeobox gene 5 0.75 0.34 -0.33
68 AT4G09970 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18
plant structures; EXPRESSED DURING: 13 growth stages; Has
15 Blast hits to 15 proteins in 6 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.75 0.3 -0.32
69 AT1G28600 GDSL-like Lipase/Acylhydrolase superfamily protein 0.75 0.34 -0.3
70 AT1G07240 UDP-glucosyl transferase 71C5 UDP-glucosyl transferase 71C5 0.75 0.31 -0.31
71 AT5G03160 homolog of mamallian P58IPK homolog of mamallian P58IPK,
homolog of mamallian P58IPK		 0.74 0.31 -0.32
72 AT4G24810 Protein kinase superfamily protein -0.74 0.32 -0.31
73 AT2G30270 Protein of unknown function (DUF567) 0.74 0.31 -0.32
74 AT1G08770 prenylated RAB acceptor 1.E prenylated RAB acceptor 1.E 0.74 0.3 -0.31
75 AT5G58930 Protein of unknown function (DUF740) -0.74 0.31 -0.32
76 AT1G10730 Clathrin adaptor complexes medium subunit family protein 0.74 0.31 -0.32
77 AT5G07810 SNF2 domain-containing protein / helicase domain-containing
protein / HNH endonuclease domain-containing protein		 -0.74 0.3 -0.31
78 AT2G23200 Protein kinase superfamily protein -0.74 0.3 -0.31
79 AT1G43890 RAB GTPASE HOMOLOG B18 ARABIDOPSIS RAB GTPASE HOMOLOG C1,
ARABIDOPSIS RAB GTPASE HOMOLOG
B18, ARABIDOPSIS RAB GTPASE
HOMOLOG C1, RAB GTPASE HOMOLOG
B18, RAB GTPASE HOMOLOG 18-1, RAB
GTPASE HOMOLOG C1		 0.74 0.31 -0.33
80 AT3G61790 Protein with RING/U-box and TRAF-like domains 0.74 0.32 -0.29
81 AT4G22540 OSBP(oxysterol binding protein)-related protein 2A OSBP(oxysterol binding
protein)-related protein 2A		 -0.74 0.28 -0.33
82 AT3G20010 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.74 0.34 -0.3
83 AT3G55140 Pectin lyase-like superfamily protein 0.74 0.3 -0.31
84 AT4G32980 homeobox gene 1 homeobox gene 1 -0.73 0.32 -0.33
85 AT4G00850 GRF1-interacting factor 3 GRF1-interacting factor 3 -0.73 0.3 -0.33
86 AT1G77110 Auxin efflux carrier family protein PIN-FORMED 6 -0.73 0.31 -0.33
87 AT5G06710 homeobox from Arabidopsis thaliana homeobox from Arabidopsis thaliana -0.73 0.33 -0.32
88 AT1G49010 Duplicated homeodomain-like superfamily protein -0.72 0.32 -0.3
89 AT3G47430 peroxin 11B peroxin 11B -0.72 0.34 -0.33
90 AT1G80870 Protein kinase superfamily protein -0.72 0.31 -0.3
91 AT4G27370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 MYOSIN VIII B, VIIIB -0.72 0.32 -0.3
92 AT5G04810 pentatricopeptide (PPR) repeat-containing protein -0.72 0.32 -0.3
93 AT3G13030 hAT transposon superfamily protein -0.72 0.3 -0.3
94 AT4G17360 Formyl transferase -0.72 0.31 -0.33
95 AT2G29890 villin-like 1 ATVLN1, villin 1 -0.71 0.31 -0.32
96 AT2G33820 Mitochondrial substrate carrier family protein ATMBAC1, MBAC1 -0.71 0.32 -0.3
97 AT3G25560 NSP-interacting kinase 2 NSP-interacting kinase 2 -0.71 0.3 -0.32
98 AT1G16720 high chlorophyll fluorescence phenotype 173 high chlorophyll fluorescence
phenotype 173		 -0.71 0.34 -0.32
99 AT5G55470 Na+/H+ (sodium hydrogen) exchanger 3 ARABIDOPSIS THALIANA NA+/H+
(SODIUM HYDROGEN) EXCHANGER 3,
Na+/H+ (sodium hydrogen) exchanger
3		 -0.71 0.31 -0.32
100 AT4G24790 AAA-type ATPase family protein -0.71 0.29 -0.31
101 AT1G55540 Nuclear pore complex protein -0.71 0.3 -0.3
102 AT2G24320 alpha/beta-Hydrolases superfamily protein -0.71 0.31 -0.31
103 AT1G69440 Argonaute family protein ARGONAUTE7, ZIPPY -0.71 0.31 -0.31
104 AT3G25950 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing
protein		 -0.7 0.32 -0.32
105 AT5G39700 myb domain protein 89 myb domain protein 89, myb domain
protein 89		 -0.7 0.32 -0.3
106 AT1G32520 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; Has 143 Blast hits to 142
proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa -
39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes -
48 (source: NCBI BLink).		 -0.7 0.32 -0.31
107 AT5G10800 RNA recognition motif (RRM)-containing protein -0.7 0.3 -0.31
108 AT5G08440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast
hits to 139 proteins in 35 species: Archae - 0; Bacteria -
9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other
Eukaryotes - 11 (source: NCBI BLink).		 -0.7 0.32 -0.31
109 AT2G32010 CVP2 like 1 CVP2 like 1 -0.69 0.3 -0.3
110 AT1G68110 ENTH/ANTH/VHS superfamily protein -0.69 0.32 -0.32
111 AT5G04880 pseudogene of ABC transporter family protein -0.69 0.31 -0.34
112 AT1G48750 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.69 0.3 -0.32
113 AT1G66730 DNA LIGASE 6 DNA LIGASE 6, DNA LIGASE 6 -0.69 0.31 -0.32
114 AT2G17970 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.69 0.31 -0.31
115 AT4G38340 Plant regulator RWP-RK family protein -0.69 0.31 -0.32
116 AT1G60570 Galactose oxidase/kelch repeat superfamily protein -0.69 0.31 -0.3
117 AT1G16260 Wall-associated kinase family protein -0.69 0.28 -0.32
118 AT5G27190 transposable element gene -0.69 0.32 -0.31
119 AT3G05750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G26910.1); Has 2317
Blast hits to 1467 proteins in 247 species: Archae - 4;
Bacteria - 750; Metazoa - 557; Fungi - 182; Plants - 180;
Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).		 -0.69 0.31 -0.32
120 AT5G61190 putative endonuclease or glycosyl hydrolase with C2H2-type
zinc finger domain		 -0.68 0.31 -0.29
121 AT5G44800 chromatin remodeling 4 chromatin remodeling 4, PICKLE
RELATED 1		 -0.68 0.32 -0.31
122 AT4G14970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 6 growth stages; Has 257 Blast hits to 164 proteins
in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189;
Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.68 0.33 -0.3
123 AT3G46130 myb domain protein 48 myb domain protein 48, ATMYB48-1,
ATMYB48-2, ATMYB48-3, myb domain
protein 48		 -0.68 0.32 -0.32
124 AT1G06740 transposable element gene -0.68 0.33 -0.3
125 AT2G29630 thiaminC PYRIMIDINE REQUIRING, thiaminC -0.68 0.31 -0.32
126 AT5G63920 topoisomerase 3alpha AtTOP3alpha, topoisomerase 3alpha -0.68 0.32 -0.31
127 AT4G19470 Leucine-rich repeat (LRR) family protein -0.68 0.35 -0.31
128 AT1G30610 pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2279, EMBRYO
DEFECTIVE 88		 -0.68 0.32 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0067 Citramalic acid (S)-(+)-, (R)-(-)-Citramalate (S)-Citramalate; (R)-Citramalate - 0.85 0.45 -0.43 C0067