AT5G14660 : ATDEF2
Query Information
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AGICode AT5G14660
Description peptide deformylase 1B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 1 0.29 -0.33
2 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.95 0.33 -0.33
3 AT3G54210 Ribosomal protein L17 family protein 0.95 0.31 -0.3
4 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.95 0.3 -0.33
5 AT4G26370 antitermination NusB domain-containing protein 0.94 0.31 -0.33
6 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.94 0.32 -0.32
7 AT5G65220 Ribosomal L29 family protein 0.94 0.31 -0.3
8 AT2G33450 Ribosomal L28 family 0.94 0.32 -0.32
9 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.94 0.31 -0.29
10 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.94 0.32 -0.29
11 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.31 -0.31
12 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.32 -0.31
13 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.93 0.32 -0.32
14 AT3G28460 methyltransferases 0.93 0.32 -0.3
15 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.93 0.32 -0.32
16 AT3G12930 Lojap-related protein 0.93 0.32 -0.31
17 AT3G13120 Ribosomal protein S10p/S20e family protein 0.93 0.31 -0.32
18 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.92 0.35 -0.32
19 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.92 0.31 -0.3
20 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.92 0.31 -0.29
21 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.92 0.33 -0.33
22 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.92 0.3 -0.3
23 AT4G37510 Ribonuclease III family protein 0.92 0.32 -0.3
24 AT2G43030 Ribosomal protein L3 family protein 0.92 0.33 -0.31
25 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.92 0.34 -0.32
26 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.92 0.33 -0.31
27 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.92 0.32 -0.31
28 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.92 0.31 -0.3
29 AT2G39670 Radical SAM superfamily protein 0.92 0.31 -0.3
30 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.92 0.3 -0.34
31 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.91 0.32 -0.31
32 AT4G34290 SWIB/MDM2 domain superfamily protein 0.91 0.33 -0.31
33 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.91 0.33 -0.33
34 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.91 0.32 -0.3
35 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.91 0.32 -0.31
36 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.91 0.32 -0.29
37 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.91 0.33 -0.32
38 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.91 0.34 -0.3
39 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.31 -0.29
40 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.91 0.33 -0.31
41 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.91 0.33 -0.32
42 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.91 0.32 -0.27
43 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.91 0.33 -0.34
44 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.91 0.31 -0.32
45 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.91 0.31 -0.34
46 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.91 0.3 -0.34
47 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.91 0.3 -0.33
48 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.91 0.32 -0.32
49 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.91 0.31 -0.33
50 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.9 0.34 -0.33
51 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5		 0.9 0.3 -0.32
52 AT1G06190 Rho termination factor 0.9 0.33 -0.34
53 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.32 -0.3
54 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.9 0.32 -0.33
55 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.9 0.3 -0.34
56 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.9 0.29 -0.3
57 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.9 0.34 -0.31
58 AT5G55220 trigger factor type chaperone family protein 0.9 0.32 -0.29
59 AT3G01480 cyclophilin 38 ARABIDOPSIS CYCLOPHILIN 38,
cyclophilin 38		 0.9 0.33 -0.31
60 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.9 0.32 -0.31
61 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.9 0.32 -0.31
62 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.9 0.32 -0.32
63 AT4G15510 Photosystem II reaction center PsbP family protein 0.9 0.32 -0.3
64 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.9 0.31 -0.31
65 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.3 -0.3
66 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.9 0.33 -0.29
67 AT3G23700 Nucleic acid-binding proteins superfamily 0.9 0.31 -0.32
68 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.9 0.33 -0.31
69 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.9 0.31 -0.3
70 AT4G34730 ribosome-binding factor A family protein 0.89 0.34 -0.32
71 AT4G20130 plastid transcriptionally active 14 plastid transcriptionally active
14		 0.89 0.3 -0.33
72 AT5G66530 Galactose mutarotase-like superfamily protein 0.89 0.34 -0.31
73 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.89 0.34 -0.33
74 AT3G51820 UbiA prenyltransferase family protein ATG4, CHLG, G4, PIGMENT DEFECTIVE
325		 0.89 0.32 -0.34
75 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.89 0.28 -0.33
76 AT3G15360 thioredoxin M-type 4 ATHM4, ARABIDOPSIS THIOREDOXIN
M-TYPE 4, thioredoxin M-type 4		 0.89 0.33 -0.32
77 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.89 0.32 -0.33
78 AT5G47190 Ribosomal protein L19 family protein 0.89 0.32 -0.31
79 AT1G14270 CAAX amino terminal protease family protein 0.89 0.32 -0.32
80 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.89 0.31 -0.34
81 AT2G18710 SECY homolog 1 SECY homolog 1 0.89 0.32 -0.32
82 AT5G52970 thylakoid lumen 15.0 kDa protein 0.89 0.31 -0.32
83 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.31 -0.33
84 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.89 0.29 -0.31
85 AT2G45560 cytochrome P450, family 76, subfamily C, polypeptide 1 cytochrome P450, family 76,
subfamily C, polypeptide 1		 0.88 0.34 -0.3
86 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.88 0.34 -0.3
87 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.88 0.33 -0.32
88 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.88 0.33 -0.33
89 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.88 0.3 -0.33
90 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.88 0.33 -0.34
91 AT2G24060 Translation initiation factor 3 protein 0.88 0.32 -0.32
92 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.88 0.33 -0.29
93 AT5G63050 embryo defective 2759 embryo defective 2759 0.88 0.31 -0.32
94 AT3G20230 Ribosomal L18p/L5e family protein 0.88 0.29 -0.3
95 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.88 0.34 -0.32
96 AT1G29070 Ribosomal protein L34 0.88 0.32 -0.33
97 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.88 0.33 -0.31
98 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.88 0.33 -0.31
99 AT2G24090 Ribosomal protein L35 0.88 0.3 -0.31
100 AT4G24510 HXXXD-type acyl-transferase family protein ECERIFERUM 2, VC-2, VC2 0.88 0.31 -0.32
101 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.88 0.32 -0.31
102 AT3G04260 plastid transcriptionally active 3 PIGMENT DEFECTIVE 324, plastid
transcriptionally active 3		 0.88 0.31 -0.29
103 AT3G25290 Auxin-responsive family protein -0.87 0.3 -0.34
104 AT2G36380 pleiotropic drug resistance 6 ATP-binding cassette G34,
PLEIOTROPIC DRUG RESISTANCE 6,
pleiotropic drug resistance 6		 -0.81 0.31 -0.32
105 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.8 0.3 -0.33
106 AT5G25930 Protein kinase family protein with leucine-rich repeat
domain		 -0.8 0.33 -0.33
107 AT2G48010 receptor-like kinase in in flowers 3 receptor-like kinase in in flowers
3		 -0.8 0.31 -0.29
108 AT5G16450 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 -0.79 0.3 -0.29
109 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.79 0.32 -0.32
110 AT1G02850 beta glucosidase 11 beta glucosidase 11 -0.78 0.3 -0.32
111 AT1G20490 AMP-dependent synthetase and ligase family protein -0.78 0.32 -0.31
112 AT5G24290 Vacuolar iron transporter (VIT) family protein -0.78 0.32 -0.3
113 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.78 0.3 -0.31
114 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.77 0.29 -0.34
115 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.77 0.33 -0.3
116 AT5G18780 F-box/RNI-like superfamily protein -0.77 0.32 -0.32
117 AT1G64060 respiratory burst oxidase protein F respiratory burst oxidase protein
F, ARABIDOPSIS THALIANA
RESPIRATORY BURST OXIDASE HOMOLOG
F, respiratory burst oxidase
protein F, RBOHAP108, RESPIRATORY
BURST OXIDASE PROTEIN F		 -0.77 0.32 -0.33
118 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.76 0.32 -0.29
119 AT3G15500 NAC domain containing protein 3 NAC domain containing protein 55,
NAC domain containing protein 3,
NAC domain containing protein 55,
NAC domain containing protein 3		 -0.76 0.35 -0.3
120 AT2G17520 Endoribonuclease/protein kinase IRE1-like ARABIDOPSIS THALIANA INOSITOL
REQUIRING 1-2, INOSITOL REQUIRING
1-2, IRE1A		 -0.76 0.32 -0.32
121 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.76 0.34 -0.31
122 AT1G77370 Glutaredoxin family protein -0.76 0.31 -0.32
123 AT1G18260 HCP-like superfamily protein EMS-mutagenized bri1 suppressor 5,
HRD3A		 -0.76 0.31 -0.33
124 AT5G47050 SBP (S-ribonuclease binding protein) family protein -0.76 0.34 -0.31
125 AT3G59700 lectin-receptor kinase lectin-receptor kinase,
lectin-receptor kinase,
LECTIN-RECEPTOR KINASE 1		 -0.75 0.3 -0.31
126 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.75 0.3 -0.32
127 AT1G78280 transferases, transferring glycosyl groups -0.75 0.32 -0.32
128 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.75 0.33 -0.3
129 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.74 0.29 -0.31
130 AT1G61120 terpene synthase 04 GERANYLLINALOOL SYNTHASE, terpene
synthase 04, TERPENE SYNTHASE 4		 -0.74 0.32 -0.32
131 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.74 0.31 -0.3
132 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.73 0.3 -0.31
133 AT5G15730 Protein kinase superfamily protein AtCRLK2,
calcium/calmodulin-regulated
receptor-like kinase 2		 -0.73 0.31 -0.31
134 AT5G57150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.73 0.31 -0.32
135 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.73 0.31 -0.34
136 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.73 0.31 -0.31
137 AT2G35980 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 ARABIDOPSIS NDR1/HIN1-LIKE 10,
NDR1/HIN1-LIKE,
YELLOW-LEAF-SPECIFIC GENE 9		 -0.72 0.28 -0.31
138 AT4G29900 autoinhibited Ca(2+)-ATPase 10 autoinhibited Ca(2+)-ATPase 10,
ATACA10, COMPACT INFLORESCENCE 1		 -0.72 0.31 -0.31
139 AT2G27450 nitrilase-like protein 1 ATNLP1, CPA, nitrilase-like
protein 1		 -0.72 0.33 -0.29
140 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.72 0.3 -0.31
141 AT2G29350 senescence-associated gene 13 senescence-associated gene 13 -0.72 0.31 -0.32