AT5G14320 : EMBRYO DEFECTIVE 3137
Query Information
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AGICode AT5G14320
Description Ribosomal protein S13/S18 family
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 1 0.31 -0.3
2 AT5G65220 Ribosomal L29 family protein 0.98 0.3 -0.32
3 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.98 0.3 -0.31
4 AT1G64510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.98 0.32 -0.3
5 AT3G54210 Ribosomal protein L17 family protein 0.97 0.33 -0.34
6 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.97 0.31 -0.31
7 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.97 0.32 -0.33
8 AT2G33450 Ribosomal L28 family 0.97 0.34 -0.31
9 AT3G25920 ribosomal protein L15 ribosomal protein L15 0.97 0.34 -0.3
10 AT5G14910 Heavy metal transport/detoxification superfamily protein 0.96 0.34 -0.32
11 AT3G15190 chloroplast 30S ribosomal protein S20, putative 0.96 0.33 -0.3
12 AT3G12930 Lojap-related protein 0.96 0.3 -0.3
13 AT3G13120 Ribosomal protein S10p/S20e family protein 0.96 0.32 -0.33
14 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.96 0.32 -0.34
15 AT5G52960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3143 (InterPro:IPR021489);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 0.95 0.33 -0.3
16 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.95 0.29 -0.29
17 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.95 0.3 -0.31
18 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.95 0.32 -0.31
19 AT5G47190 Ribosomal protein L19 family protein 0.95 0.32 -0.3
20 AT2G43030 Ribosomal protein L3 family protein 0.95 0.34 -0.29
21 AT1G14270 CAAX amino terminal protease family protein 0.95 0.3 -0.31
22 AT1G05190 Ribosomal protein L6 family embryo defective 2394 0.95 0.31 -0.32
23 AT3G56910 plastid-specific 50S ribosomal protein 5 plastid-specific 50S ribosomal
protein 5		 0.95 0.32 -0.3
24 AT2G40490 Uroporphyrinogen decarboxylase HEME2 0.94 0.31 -0.32
25 AT4G17560 Ribosomal protein L19 family protein 0.94 0.31 -0.31
26 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.94 0.31 -0.3
27 AT1G01080 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.31 -0.31
28 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.94 0.31 -0.3
29 AT1G32990 plastid ribosomal protein l11 plastid ribosomal protein l11 0.94 0.33 -0.31
30 AT1G75350 Ribosomal protein L31 embryo defective 2184 0.94 0.3 -0.32
31 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.94 0.33 -0.3
32 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.94 0.33 -0.3
33 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.94 0.31 -0.33
34 AT3G52150 RNA-binding (RRM/RBD/RNP motifs) family protein 0.94 0.34 -0.32
35 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.93 0.32 -0.32
36 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.93 0.33 -0.33
37 AT4G11175 Nucleic acid-binding, OB-fold-like protein 0.93 0.32 -0.32
38 AT2G48070 resistance to phytophthora 1 RESISTANCE TO PHYTOPHTHORA 1 0.93 0.3 -0.33
39 AT4G34620 small subunit ribosomal protein 16 small subunit ribosomal protein 16 0.93 0.32 -0.33
40 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.93 0.31 -0.34
41 AT1G53520 Chalcone-flavanone isomerase family protein 0.93 0.31 -0.3
42 AT5G13510 Ribosomal protein L10 family protein EMBRYO DEFECTIVE 3136 0.93 0.32 -0.31
43 AT2G33800 Ribosomal protein S5 family protein EMBRYO DEFECTIVE 3113 0.93 0.3 -0.32
44 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.93 0.32 -0.3
45 AT4G24930 thylakoid lumenal 17.9 kDa protein, chloroplast 0.93 0.32 -0.3
46 AT3G44890 ribosomal protein L9 ribosomal protein L9 0.93 0.31 -0.31
47 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5		 0.92 0.3 -0.32
48 AT1G06190 Rho termination factor 0.92 0.33 -0.31
49 AT4G34730 ribosome-binding factor A family protein 0.92 0.33 -0.32
50 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.92 0.32 -0.33
51 AT1G62780 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; Has 94
Blast hits to 94 proteins in 35 species: Archae - 6;
Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48;
Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.92 0.29 -0.3
52 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.92 0.34 -0.33
53 AT3G28460 methyltransferases 0.92 0.32 -0.3
54 AT3G60370 FKBP-like peptidyl-prolyl cis-trans isomerase family
protein		 0.92 0.33 -0.3
55 AT4G37510 Ribonuclease III family protein 0.92 0.33 -0.32
56 AT5G55220 trigger factor type chaperone family protein 0.92 0.32 -0.3
57 AT4G34190 stress enhanced protein 1 stress enhanced protein 1 0.92 0.31 -0.31
58 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.92 0.34 -0.32
59 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.92 0.32 -0.34
60 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.92 0.3 -0.32
61 AT5G16140 Peptidyl-tRNA hydrolase family protein 0.92 0.29 -0.31
62 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.92 0.31 -0.32
63 AT4G15510 Photosystem II reaction center PsbP family protein 0.92 0.32 -0.32
64 AT5G54600 Translation protein SH3-like family protein 0.92 0.34 -0.32
65 AT2G18710 SECY homolog 1 SECY homolog 1 0.92 0.32 -0.31
66 AT5G52970 thylakoid lumen 15.0 kDa protein 0.92 0.32 -0.31
67 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.92 0.34 -0.31
68 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.92 0.34 -0.33
69 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.91 0.33 -0.3
70 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 0.91 0.33 -0.31
71 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.91 0.34 -0.31
72 AT4G09650 ATP synthase delta-subunit gene ATP synthase delta-subunit gene,
PIGMENT DEFECTIVE 332		 0.91 0.31 -0.33
73 AT1G35680 Ribosomal protein L21 chloroplast ribosomal protein L21 0.91 0.32 -0.33
74 AT3G14930 Uroporphyrinogen decarboxylase HEME1 0.91 0.32 -0.32
75 AT3G62910 Peptide chain release factor 1 ALBINO AND PALE GREEN 0.91 0.32 -0.32
76 AT1G32470 Single hybrid motif superfamily protein 0.91 0.31 -0.32
77 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.91 0.32 -0.33
78 AT5G51110 Transcriptional coactivator/pterin dehydratase 0.91 0.31 -0.33
79 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.32 -0.3
80 AT3G20230 Ribosomal L18p/L5e family protein 0.91 0.3 -0.29
81 AT1G17650 glyoxylate reductase 2 glyoxylate reductase 2, GLYOXYLATE
REDUCTASE 2		 0.91 0.29 -0.31
82 AT2G26930 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5'-phospho)-2-C-methyl-D-erithrito
l kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, 4-(cytidine
5′-diphospho)-2-C-methyl-d-e
rythritol kinase, ISPE, PIGMENT
DEFECTIVE 277		 0.91 0.31 -0.31
83 AT2G24090 Ribosomal protein L35 0.91 0.31 -0.33
84 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.91 0.33 -0.32
85 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.91 0.31 -0.31
86 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.91 0.33 -0.33
87 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.91 0.33 -0.32
88 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.9 0.32 -0.31
89 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.9 0.31 -0.31
90 AT1G76450 Photosystem II reaction center PsbP family protein 0.9 0.34 -0.29
91 AT5G18660 NAD(P)-binding Rossmann-fold superfamily protein PALE-GREEN AND CHLOROPHYLL B
REDUCED 2		 0.9 0.31 -0.32
92 AT4G25050 acyl carrier protein 4 acyl carrier protein 4 0.9 0.3 -0.32
93 AT4G34290 SWIB/MDM2 domain superfamily protein 0.9 0.31 -0.35
94 AT4G20360 RAB GTPase homolog E1B ATRAB8D, RAB GTPase homolog E1B,
RAB GTPase homolog E1B		 0.9 0.3 -0.31
95 AT3G62030 rotamase CYP 4 cyclophilin 20-3, rotamase CYP 4 0.9 0.34 -0.31
96 AT4G26370 antitermination NusB domain-containing protein 0.9 0.32 -0.32
97 AT4G16410 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF751 (InterPro:IPR008470); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.9 0.31 -0.35
98 AT1G01970 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.32 -0.28
99 AT5G57930 Arabidopsis thaliana protein of unknown function (DUF794) ACCUMULATION OF PHOTOSYSTEM ONE 2,
embryo defective 1629		 0.9 0.3 -0.33
100 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.9 0.31 -0.3
101 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.9 0.32 -0.3
102 AT1G10960 ferredoxin 1 ferredoxin 1, ferredoxin 1 0.9 0.33 -0.31
103 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.9 0.33 -0.29
104 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.9 0.32 -0.32
105 AT1G29070 Ribosomal protein L34 0.9 0.31 -0.32
106 AT3G14110 Tetratricopeptide repeat (TPR)-like superfamily protein FLUORESCENT IN BLUE LIGHT 0.9 0.32 -0.32
107 AT2G37660 NAD(P)-binding Rossmann-fold superfamily protein 0.9 0.33 -0.32
108 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.9 0.32 -0.32
109 AT3G55250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 46
Blast hits to 46 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 PIGMENT DEFECTIVE 329 0.9 0.32 -0.33
110 AT3G23700 Nucleic acid-binding proteins superfamily 0.9 0.34 -0.31
111 AT1G59840 cofactor assembly of complex C cofactor assembly of complex C 0.9 0.33 -0.3
112 AT2G20890 photosystem II reaction center PSB29 protein photosystem II reaction center
PSB29 protein, THYLAKOID
FORMATION1		 0.9 0.31 -0.33
113 AT1G44575 Chlorophyll A-B binding family protein CP22, NONPHOTOCHEMICAL QUENCHING
4, PHOTOSYSTEM II SUBUNIT S		 0.9 0.32 -0.29
114 AT3G45050 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 26 Blast hits to 26 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.9 0.3 -0.31
115 AT3G05600 alpha/beta-Hydrolases superfamily protein 0.9 0.29 -0.32
116 AT1G67740 photosystem II BY photosystem II BY, YCF32 0.9 0.31 -0.32
117 AT4G21280 photosystem II subunit QA PHOTOSYSTEM II SUBUNIT Q,
PHOTOSYSTEM II SUBUNIT Q-1,
photosystem II subunit QA		 0.9 0.31 -0.32
118 AT2G42890 MEI2-like 2 MEI2-like 2, MEI2-like 2 -0.83 0.33 -0.33
119 AT4G18360 Aldolase-type TIM barrel family protein -0.82 0.31 -0.31
120 AT3G25290 Auxin-responsive family protein -0.82 0.32 -0.29
121 AT5G63970 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.8 0.32 -0.31
122 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.8 0.32 -0.32
123 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.79 0.32 -0.33
124 AT1G02850 beta glucosidase 11 beta glucosidase 11 -0.78 0.31 -0.33
125 AT5G18780 F-box/RNI-like superfamily protein -0.78 0.34 -0.31
126 AT2G28110 Exostosin family protein FRAGILE FIBER 8, IRREGULAR XYLEM 7 -0.78 0.3 -0.32
127 AT1G76790 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 5		 -0.77 0.35 -0.33
128 AT1G20490 AMP-dependent synthetase and ligase family protein -0.77 0.31 -0.34
129 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.31 -0.32
130 AT1G14240 GDA1/CD39 nucleoside phosphatase family protein -0.75 0.34 -0.33
131 AT1G35260 MLP-like protein 165 MLP-like protein 165 -0.75 0.3 -0.32
132 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.75 0.35 -0.36
133 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.74 0.3 -0.34
134 AT5G24090 chitinase A chitinase A, chitinase A -0.74 0.33 -0.34
135 AT4G10050 esterase/lipase/thioesterase family protein -0.74 0.29 -0.3
136 AT5G49880 mitotic checkpoint family protein -0.73 0.31 -0.32
137 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.73 0.31 -0.31
138 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.73 0.29 -0.33
139 AT5G65660 hydroxyproline-rich glycoprotein family protein -0.71 0.31 -0.3
140 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.71 0.3 -0.31
141 AT4G11670 Protein of unknown function (DUF810) -0.71 0.31 -0.34
142 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.7 0.29 -0.32
143 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.7 0.31 -0.32
144 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.7 0.29 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
145 C0051 Aconitic acid cis-Aconitic acid cis-Aconitate glutamine biosynthesis III,
TCA cycle variation V (plant),
glyoxylate cycle,
TCA cycle variation III (eukaryotic) 		-0.79 0.47 -0.42 C0051