AT5G12210 : RAB geranylgeranyl transferase beta subunit 1
Query Information
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AGICode AT5G12210
Description RAB geranylgeranyl transferase beta subunit 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G12210 RAB geranylgeranyl transferase beta subunit 1 RAB geranylgeranyl transferase
beta subunit 1, RAB geranylgeranyl
transferase beta subunit 1		 1 0.34 -0.31
2 AT5G07440 glutamate dehydrogenase 2 glutamate dehydrogenase 2 0.87 0.3 -0.3
3 AT3G58750 citrate synthase 2 citrate synthase 2 0.85 0.31 -0.31
4 AT4G19880 Glutathione S-transferase family protein 0.84 0.32 -0.29
5 AT1G34370 C2H2 and C2HC zinc fingers superfamily protein sensitive to proton rhizotoxicity
1		 0.84 0.33 -0.33
6 AT1G60420 DC1 domain-containing protein 0.84 0.34 -0.33
7 AT4G14430 indole-3-butyric acid response 10 ARABIDOPSIS THALIANA DELTA(3),
DELTA(2)-ENOYL COA ISOMERASE 2,
ENOYL-COA HYDRATASE/ISOMERASE B,
DELTA(3), DELTA(2)-ENOYL COA
ISOMERASE 2, indole-3-butyric acid
response 10, PEC12		 0.84 0.29 -0.33
8 AT2G33150 peroxisomal 3-ketoacyl-CoA thiolase 3 3-KETOACYL-COA THIOLASE 2,
PEROXISOME DEFECTIVE 1,
peroxisomal 3-ketoacyl-CoA
thiolase 3		 0.84 0.34 -0.31
9 AT1G32790 CTC-interacting domain 11 CTC-interacting domain 11 0.83 0.31 -0.32
10 AT1G15670 Galactose oxidase/kelch repeat superfamily protein 0.83 0.31 -0.33
11 AT3G51840 acyl-CoA oxidase 4 acyl-CoA oxidase 4, ATG6, ATSCX 0.83 0.3 -0.32
12 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3		 0.82 0.32 -0.32
13 AT5G63680 Pyruvate kinase family protein 0.82 0.31 -0.3
14 AT3G14990 Class I glutamine amidotransferase-like superfamily protein DJ-1 homolog A, DJ-1 homolog A 0.82 0.32 -0.32
15 AT5G11520 aspartate aminotransferase 3 aspartate aminotransferase 3,
YELLOW-LEAF-SPECIFIC GENE 4		 0.82 0.31 -0.32
16 AT4G13360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 0.81 0.32 -0.32
17 AT3G15290 3-hydroxyacyl-CoA dehydrogenase family protein 0.81 0.31 -0.31
18 AT1G21810 Plant protein of unknown function (DUF869) -0.81 0.32 -0.33
19 AT1G02500 S-adenosylmethionine synthetase 1 AtSAM1, MAT1, METK1,
S-ADENOSYLMETHIONINE SYNTHETASE-1,
S-adenosylmethionine synthetase 1		 0.8 0.31 -0.32
20 AT1G29195 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, 4 leaf senescence
stage, petal differentiation and expansion stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.32 -0.31
21 AT1G63180 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 UDP-D-glucose/UDP-D-galactose
4-epimerase 3		 0.8 0.32 -0.31
22 AT1G78580 trehalose-6-phosphate synthase trehalose-6-phosphate synthase,
trehalose-6-phosphate synthase,
TREHALOSE-6-PHOSPHATE SYNTHASE 1		 -0.8 0.31 -0.31
23 AT2G22780 peroxisomal NAD-malate dehydrogenase 1 peroxisomal NAD-malate
dehydrogenase 1		 0.8 0.32 -0.31
24 AT3G17810 pyrimidine 1 pyrimidine 1 0.8 0.29 -0.32
25 AT2G01540 Calcium-dependent lipid-binding (CaLB domain) family
protein		 0.8 0.32 -0.32
26 AT1G09430 ATP-citrate lyase A-3 ATP-citrate lyase A-3 0.8 0.34 -0.33
27 AT4G29490 Metallopeptidase M24 family protein 0.8 0.3 -0.32
28 AT2G37110 PLAC8 family protein 0.79 0.33 -0.31
29 AT1G10140 Uncharacterised conserved protein UCP031279 0.79 0.31 -0.3
30 AT1G06180 myb domain protein 13 myb domain protein 13, ATMYBLFGN,
myb domain protein 13		 0.79 0.3 -0.32
31 AT4G29950 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.79 0.31 -0.33
32 AT3G01970 WRKY DNA-binding protein 45 WRKY DNA-BINDING PROTEIN 45, WRKY
DNA-binding protein 45		 0.79 0.31 -0.32
33 AT1G73870 B-box type zinc finger protein with CCT domain -0.79 0.31 -0.33
34 AT4G04340 ERD (early-responsive to dehydration stress) family protein -0.79 0.33 -0.31
35 AT1G05000 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP1, plant and fungi
atypical dual-specificity
phosphatase 1		 0.79 0.31 -0.29
36 AT4G39955 alpha/beta-Hydrolases superfamily protein 0.79 0.3 -0.32
37 AT5G17650 glycine/proline-rich protein 0.79 0.32 -0.3
38 AT5G59350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.79 0.33 -0.32
39 AT1G68140 Protein of unknown function (DUF1644) 0.78 0.3 -0.33
40 AT5G11590 Integrase-type DNA-binding superfamily protein TINY2 -0.78 0.32 -0.29
41 AT4G35830 aconitase 1 aconitase 1 0.78 0.33 -0.33
42 AT2G19570 cytidine deaminase 1 AT-CDA1, cytidine deaminase 1,
DESZ		 0.78 0.32 -0.31
43 AT4G30550 Class I glutamine amidotransferase-like superfamily protein gamma-glutamyl peptidase 3 0.78 0.3 -0.32
44 AT3G04520 threonine aldolase 2 threonine aldolase 2 0.78 0.34 -0.31
45 AT3G03120 ADP-ribosylation factor B1C ADP-ribosylation factor B1C,
ADP-ribosylation factor B1C		 0.78 0.31 -0.33
46 AT2G35010 thioredoxin O1 thioredoxin O1, thioredoxin O1 0.78 0.31 -0.32
47 AT5G58375 Methyltransferase-related protein 0.78 0.3 -0.31
48 AT1G72800 RNA-binding (RRM/RBD/RNP motifs) family protein 0.78 0.33 -0.3
49 AT3G45300 isovaleryl-CoA-dehydrogenase ATIVD,
isovaleryl-CoA-dehydrogenase,
ISOVALERYL-COA-DEHYDROGENASE		 0.78 0.31 -0.3
50 AT2G43820 UDP-glucosyltransferase 74F2 Arabidopsis thaliana salicylic
acid glucosyltransferase 1, GT,
salicylic acid glucosyltransferase
1, UDP-glucose:salicylic acid
glucosyltransferase 1,
UDP-glucosyltransferase 74F2		 0.78 0.31 -0.31
51 AT1G01800 NAD(P)-binding Rossmann-fold superfamily protein 0.78 0.32 -0.32
52 AT3G30775 Methylenetetrahydrofolate reductase family protein AT-POX, ATPDH, ARABIDOPSIS
THALIANA PROLINE OXIDASE, EARLY
RESPONSIVE TO DEHYDRATION 5,
proline dehydrogenase 1, PRO1,
PROLINE DEHYDROGENASE		 0.77 0.33 -0.3
53 AT2G20360 NAD(P)-binding Rossmann-fold superfamily protein 0.77 0.29 -0.29
54 AT1G09740 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.77 0.32 -0.33
55 AT2G02040 peptide transporter 2 ARABIDOPSIS THALIANA PEPTIDE
TRANSPORTER 2, ATPTR2-B, NITRATE
TRANSPORTER 1, peptide transporter
2, PTR2-B		 0.77 0.3 -0.3
56 AT1G17530 translocase of inner mitochondrial membrane 23 translocase of inner mitochondrial
membrane 23, translocase of inner
mitochondrial membrane 23		 0.77 0.31 -0.3
57 AT5G03460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.31 -0.31
58 AT1G69510 cAMP-regulated phosphoprotein 19-related protein 0.77 0.3 -0.31
59 AT1G08315 ARM repeat superfamily protein 0.77 0.3 -0.34
60 AT3G56370 Leucine-rich repeat protein kinase family protein -0.77 0.3 -0.31
61 AT5G56180 actin-related protein 8 ARP8, actin-related protein 8,
actin-related protein 8		 0.76 0.3 -0.32
62 AT1G24180 Thiamin diphosphate-binding fold (THDP-binding) superfamily
protein		 IAA-CONJUGATE-RESISTANT 4 0.76 0.31 -0.31
63 AT5G47890 NADH-ubiquinone oxidoreductase B8 subunit, putative 0.76 0.32 -0.31
64 AT1G32170 xyloglucan endotransglucosylase/hydrolase 30 xyloglucan
endotransglucosylase/hydrolase 30,
xyloglucan endotransglycosylase 4		 0.76 0.33 -0.34
65 AT5G65020 annexin 2 annexin 2 0.76 0.33 -0.29
66 AT1G20630 catalase 1 catalase 1 0.76 0.33 -0.3
67 AT5G42890 sterol carrier protein 2 STEROL CARRIER PROTEIN 2, sterol
carrier protein 2		 0.75 0.32 -0.31
68 AT2G28120 Major facilitator superfamily protein 0.75 0.31 -0.3
69 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.75 0.31 -0.33
70 AT4G11120 translation elongation factor Ts (EF-Ts), putative 0.75 0.32 -0.34
71 AT3G54620 basic leucine zipper 25 ARABIDOPSIS THALIANA BASIC LEUCINE
ZIPPER 25, basic leucine zipper
25, BASIC LEUCINE ZIPPER O2
HOMOLOG 4		 0.75 0.31 -0.31
72 AT2G47750 putative indole-3-acetic acid-amido synthetase GH3.9 putative indole-3-acetic
acid-amido synthetase GH3.9		 -0.75 0.3 -0.32
73 AT4G35470 plant intracellular ras group-related LRR 4 plant intracellular ras
group-related LRR 4		 -0.75 0.32 -0.3
74 AT1G77110 Auxin efflux carrier family protein PIN-FORMED 6 -0.75 0.29 -0.3
75 AT5G67380 casein kinase alpha 1 ATCKA1, casein kinase alpha 1 0.75 0.33 -0.31
76 AT2G40800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits
to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.75 0.34 -0.32
77 AT1G75820 Leucine-rich receptor-like protein kinase family protein ATCLV1, CLAVATA 1, FASCIATA 3,
FLOWER DEVELOPMENT 5		 -0.75 0.31 -0.3
78 AT1G23040 hydroxyproline-rich glycoprotein family protein 0.75 0.33 -0.29
79 AT5G59360 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.75 0.33 -0.31
80 AT4G16130 arabinose kinase arabinose kinase, ATISA1, ISA1 0.75 0.3 -0.32
81 AT1G65900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to
306 proteins in 119 species: Archae - 19; Bacteria - 238;
Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other
Eukaryotes - 15 (source: NCBI BLink).		 -0.75 0.32 -0.3
82 AT3G59550 Rad21/Rec8-like family protein SISTER CHROMATID COHESION 1
PROTEIN 3, ATSYN3, SYN3		 -0.74 0.31 -0.35
83 AT1G20650 Protein kinase superfamily protein ALTERED SEED GERMINATION 5 -0.74 0.3 -0.29
84 AT1G44446 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ARABIDOPSIS THALIANA CHLOROPHYLL A
OXYGENASE, CHLOROPHYLL A
OXYGENASE, CHLORINA 1		 -0.73 0.3 -0.32
85 AT1G51080 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 11 growth stages; Has 101 Blast hits to 98 proteins
in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38;
Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26
(source: NCBI BLink).		 -0.73 0.32 -0.33
86 AT1G62085 Mitochondrial transcription termination factor family
protein		 -0.73 0.3 -0.32
87 AT5G11790 N-MYC downregulated-like 2 N-MYC downregulated-like 2 -0.73 0.33 -0.33
88 AT1G67040 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 11 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.73 0.28 -0.31
89 AT3G03770 Leucine-rich repeat protein kinase family protein -0.73 0.31 -0.31
90 AT4G36360 beta-galactosidase 3 beta-galactosidase 3 -0.72 0.31 -0.31
91 AT5G50740 Heavy metal transport/detoxification superfamily protein -0.72 0.33 -0.32
92 AT4G37750 Integrase-type DNA-binding superfamily protein AINTEGUMENTA, CKC, COMPLEMENTING A
PROTEIN KINASE C MUTANT 1, DRAGON		 -0.72 0.32 -0.28
93 AT1G30600 Subtilase family protein -0.72 0.33 -0.31
94 AT1G30360 Early-responsive to dehydration stress protein (ERD4) early-responsive to dehydration 4 -0.72 0.33 -0.3
95 AT4G04890 protodermal factor 2 protodermal factor 2 -0.71 0.31 -0.32
96 AT5G61300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G07790.2); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.71 0.32 -0.31
97 AT3G25500 formin homology 1 formin homology 1, AHF1,
ARABIDOPSIS THALIANA FORMIN
HOMOLOGY 1, FORMIN HOMOLOGY 1		 -0.71 0.28 -0.33
98 AT1G70370 polygalacturonase 2 polygalacturonase 2 -0.71 0.31 -0.34
99 AT4G32710 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 14		 -0.71 0.33 -0.32
100 AT3G63120 cyclin p1;1 cyclin p1;1 -0.71 0.33 -0.32
101 AT4G30020 PA-domain containing subtilase family protein -0.7 0.31 -0.31
102 AT1G22740 RAB GTPase homolog G3B ATRABG3B, RAB7, RAB75, RAB GTPase
homolog G3B		 -0.7 0.33 -0.31
103 AT2G37300 unknown protein; Has 93 Blast hits to 62 proteins in 29
species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi -
19; Plants - 25; Viruses - 0; Other Eukaryotes - 30
(source: NCBI BLink).		 ATP-binding cassette I16 -0.7 0.33 -0.33
104 AT5G55340 MBOAT (membrane bound O-acyl transferase) family protein -0.7 0.34 -0.32
105 AT5G07690 myb domain protein 29 myb domain protein 29, myb domain
protein 29, PRODUCTION OF
METHIONINE-DERIVED GLUCOSINOLATE 2		 -0.7 0.32 -0.33
106 AT2G37380 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G39370.1); Has 1284 Blast hits
to 422 proteins in 114 species: Archae - 0; Bacteria - 90;
Metazoa - 125; Fungi - 151; Plants - 136; Viruses - 0;
Other Eukaryotes - 782 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 3		 -0.7 0.31 -0.31
107 AT5G45650 subtilase family protein -0.7 0.3 -0.3
108 AT1G08840 DNA replication helicase, putative embryo defective 2411 -0.69 0.28 -0.32
109 AT4G29080 phytochrome-associated protein 2 indole-3-acetic acid inducible 27,
phytochrome-associated protein 2		 -0.69 0.32 -0.31
110 AT3G56100 meristematic receptor-like kinase IMK3, meristematic receptor-like
kinase		 -0.69 0.3 -0.31
111 AT5G48600 structural maintenance of chromosome 3 ARABIDOPSIS THALIANA CHROMOSOME
ASSOCIATED PROTEIN-C, structural
maintenance of chromosome 3,
ARABIDOPSIS THALIANA STRUCTURAL
MAINTENANCE OF CHROMOSOME 4,
structural maintenance of
chromosome 3		 -0.68 0.33 -0.33
112 AT4G34980 subtilisin-like serine protease 2 subtilisin-like serine protease 2 -0.68 0.31 -0.33
113 AT1G27680 ADPGLC-PPase large subunit ADPGLC-PPase large subunit -0.68 0.31 -0.31
114 AT5G17600 RING/U-box superfamily protein -0.68 0.32 -0.34
115 AT3G03690 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 unfertilized embryo sac 7 -0.68 0.35 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
116 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		0.81 0.43 -0.43 C0120
117 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.74 0.45 -0.43 C0016