AT5G10360 : embryo defective 3010
Query Information
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AGICode AT5G10360
Description Ribosomal protein S6e
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 1 0.31 -0.33
2 AT4G16720 Ribosomal protein L23/L15e family protein 0.94 0.32 -0.32
3 AT2G32060 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.94 0.29 -0.33
4 AT5G27850 Ribosomal protein L18e/L15 superfamily protein 0.91 0.34 -0.33
5 AT5G47700 60S acidic ribosomal protein family 0.91 0.31 -0.32
6 AT1G04480 Ribosomal protein L14p/L23e family protein 0.91 0.32 -0.31
7 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 0.91 0.32 -0.3
8 AT1G34030 Ribosomal protein S13/S18 family 0.91 0.29 -0.31
9 AT1G29250 Alba DNA/RNA-binding protein 0.91 0.31 -0.34
10 AT1G26880 Ribosomal protein L34e superfamily protein 0.91 0.32 -0.31
11 AT2G19730 Ribosomal L28e protein family 0.91 0.32 -0.31
12 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.9 0.33 -0.32
13 AT3G04840 Ribosomal protein S3Ae 0.9 0.3 -0.32
14 AT2G44120 Ribosomal protein L30/L7 family protein 0.9 0.32 -0.32
15 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.9 0.3 -0.31
16 AT3G11510 Ribosomal protein S11 family protein 0.9 0.32 -0.31
17 AT5G39740 ribosomal protein L5 B OLIGOCELLULA 7, ribosomal protein
L5 B		 0.9 0.3 -0.31
18 AT5G57290 60S acidic ribosomal protein family 0.9 0.32 -0.31
19 AT3G47370 Ribosomal protein S10p/S20e family protein 0.9 0.32 -0.3
20 AT5G27770 Ribosomal L22e protein family 0.9 0.29 -0.31
21 AT3G23390 Zinc-binding ribosomal protein family protein 0.9 0.31 -0.33
22 AT3G56340 Ribosomal protein S26e family protein 0.9 0.33 -0.31
23 AT2G45730 eukaryotic initiation factor 3 gamma subunit family protein 0.9 0.32 -0.31
24 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 0.9 0.29 -0.31
25 AT2G36620 ribosomal protein L24 ribosomal protein L24 0.9 0.3 -0.3
26 AT4G15000 Ribosomal L27e protein family 0.89 0.31 -0.32
27 AT1G54690 gamma histone variant H2AX GAMMA H2AX, gamma histone variant
H2AX, H2AXB, histone H2A 3		 0.89 0.32 -0.31
28 AT1G67430 Ribosomal protein L22p/L17e family protein 0.89 0.3 -0.32
29 AT5G35530 Ribosomal protein S3 family protein 0.89 0.32 -0.31
30 AT2G01250 Ribosomal protein L30/L7 family protein 0.89 0.29 -0.31
31 AT3G09200 Ribosomal protein L10 family protein 0.89 0.32 -0.3
32 AT2G20450 Ribosomal protein L14 0.89 0.32 -0.32
33 AT4G25740 RNA binding Plectin/S10 domain-containing protein 0.89 0.32 -0.31
34 AT3G02080 Ribosomal protein S19e family protein 0.89 0.32 -0.32
35 AT5G61170 Ribosomal protein S19e family protein 0.89 0.31 -0.31
36 AT3G09500 Ribosomal L29 family protein 0.89 0.3 -0.33
37 AT2G39460 ribosomal protein L23AA ARABIDOPSIS THALIANA RIBOSOMAL
PROTEIN L23A, RIBOSOMAL PROTEIN
L23A, RIBOSOMAL PROTEIN L23A1,
ribosomal protein L23AA		 0.89 0.3 -0.29
38 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.88 0.29 -0.33
39 AT1G69620 ribosomal protein L34 ribosomal protein L34 0.88 0.3 -0.33
40 AT5G19510 Translation elongation factor EF1B/ribosomal protein S6
family protein		 0.88 0.31 -0.33
41 AT2G27720 60S acidic ribosomal protein family 0.88 0.3 -0.34
42 AT1G18080 Transducin/WD40 repeat-like superfamily protein ATARCA, RACK1A, RECEPTOR FOR
ACTIVATED C KINASE 1 A		 0.88 0.27 -0.31
43 AT3G05590 ribosomal protein L18 ribosomal protein L18 0.88 0.32 -0.3
44 AT2G39390 Ribosomal L29 family protein 0.88 0.32 -0.3
45 AT1G07070 Ribosomal protein L35Ae family protein 0.88 0.32 -0.3
46 AT3G02560 Ribosomal protein S7e family protein 0.88 0.33 -0.31
47 AT5G09510 Ribosomal protein S19 family protein 0.87 0.31 -0.32
48 AT1G48830 Ribosomal protein S7e family protein 0.87 0.32 -0.34
49 AT3G05560 Ribosomal L22e protein family 0.87 0.32 -0.31
50 AT5G03850 Nucleic acid-binding, OB-fold-like protein 0.87 0.29 -0.33
51 AT5G67510 Translation protein SH3-like family protein 0.87 0.31 -0.3
52 AT2G36170 Ubiquitin supergroup;Ribosomal protein L40e 0.87 0.31 -0.31
53 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.87 0.32 -0.31
54 AT5G64140 ribosomal protein S28 ribosomal protein S28 0.87 0.33 -0.31
55 AT4G00100 ribosomal protein S13A ribosomal protein S13A, POINTED
FIRST LEAF 2, RPS13, ribosomal
protein S13A		 0.87 0.32 -0.31
56 AT2G36160 Ribosomal protein S11 family protein 0.87 0.29 -0.31
57 AT3G60770 Ribosomal protein S13/S15 0.87 0.31 -0.31
58 AT4G29410 Ribosomal L28e protein family 0.87 0.3 -0.3
59 AT3G06680 Ribosomal L29e protein family 0.87 0.32 -0.3
60 AT5G50810 translocase inner membrane subunit 8 translocase inner membrane subunit
8		 0.87 0.31 -0.31
61 AT3G18130 receptor for activated C kinase 1C receptor for activated C kinase
1C, receptor for activated C
kinase 1C		 0.87 0.32 -0.3
62 AT1G22780 Ribosomal protein S13/S18 family POINTED FIRST LEAVES, POINTED
FIRST LEAVES 1, 40S RIBOSOMAL
PROTEIN S18		 0.87 0.32 -0.32
63 AT1G74270 Ribosomal protein L35Ae family protein 0.87 0.33 -0.33
64 AT2G47610 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.87 0.32 -0.31
65 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.87 0.31 -0.33
66 AT2G27710 60S acidic ribosomal protein family 0.86 0.33 -0.3
67 AT3G11250 Ribosomal protein L10 family protein 0.86 0.32 -0.3
68 AT4G25890 60S acidic ribosomal protein family 0.86 0.34 -0.31
69 AT2G33370 Ribosomal protein L14p/L23e family protein 0.86 0.33 -0.31
70 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.86 0.33 -0.31
71 AT1G73230 Nascent polypeptide-associated complex NAC 0.86 0.31 -0.32
72 AT4G31700 ribosomal protein S6 ribosomal protein S6, RPS6A 0.86 0.29 -0.33
73 AT3G58700 Ribosomal L5P family protein 0.86 0.31 -0.32
74 AT5G07090 Ribosomal protein S4 (RPS4A) family protein 0.86 0.3 -0.32
75 AT3G52580 Ribosomal protein S11 family protein 0.86 0.34 -0.32
76 AT2G25210 Ribosomal protein L39 family protein 0.86 0.31 -0.33
77 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.86 0.32 -0.31
78 AT2G34480 Ribosomal protein L18ae/LX family protein 0.86 0.32 -0.31
79 AT3G12390 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.86 0.3 -0.31
80 AT3G16780 Ribosomal protein L19e family protein 0.86 0.31 -0.3
81 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.85 0.31 -0.31
82 AT3G25520 ribosomal protein L5 ribosomal protein L5, OLIGOCELLULA
5, PIGGYBACK3, RIBOSOMAL PROTEIN
L5 A		 0.85 0.34 -0.32
83 AT1G18540 Ribosomal protein L6 family protein 0.85 0.31 -0.32
84 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.85 0.31 -0.31
85 AT3G55280 ribosomal protein L23AB RIBOSOMAL PROTEIN L23A2, ribosomal
protein L23AB		 0.85 0.3 -0.3
86 AT5G23900 Ribosomal protein L13e family protein 0.85 0.31 -0.31
87 AT3G07110 Ribosomal protein L13 family protein 0.85 0.31 -0.33
88 AT4G26230 Ribosomal protein L31e family protein 0.85 0.34 -0.32
89 AT3G09630 Ribosomal protein L4/L1 family 0.85 0.3 -0.32
90 AT3G59650 mitochondrial ribosomal protein L51/S25/CI-B8 family
protein		 0.85 0.3 -0.31
91 AT5G06360 Ribosomal protein S8e family protein 0.84 0.32 -0.31
92 AT3G53890 Ribosomal protein S21e 0.84 0.3 -0.33
93 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.84 0.3 -0.33
94 AT3G53430 Ribosomal protein L11 family protein 0.84 0.29 -0.33
95 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.84 0.32 -0.35
96 AT4G31985 Ribosomal protein L39 family protein 0.84 0.3 -0.3
97 AT1G31860 histidine biosynthesis bifunctional protein (HISIE) AT-IE, HISTIDINE BIOSYNTHESIS 2 0.84 0.34 -0.3
98 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.84 0.31 -0.31
99 AT5G15200 Ribosomal protein S4 0.84 0.3 -0.3
100 AT1G72370 40s ribosomal protein SA AP40, 40s ribosomal protein SA,
RP40, RPSAA		 0.84 0.31 -0.31
101 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.84 0.32 -0.31
102 AT2G37190 Ribosomal protein L11 family protein 0.84 0.32 -0.31
103 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.84 0.34 -0.3
104 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.84 0.31 -0.32
105 AT3G06700 Ribosomal L29e protein family 0.84 0.31 -0.32
106 AT3G04920 Ribosomal protein S24e family protein 0.83 0.34 -0.31
107 AT3G07910 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Reactive oxygen species modulator 1 (InterPro:IPR018450);
Has 192 Blast hits to 192 proteins in 80 species: Archae -
0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).		 0.83 0.3 -0.31
108 AT2G44860 Ribosomal protein L24e family protein 0.83 0.29 -0.32
109 AT3G61620 3'-5'-exoribonuclease family protein RRP41 0.83 0.31 -0.3
110 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.83 0.33 -0.32
111 AT3G06610 DNA-binding enhancer protein-related 0.83 0.34 -0.33
112 AT4G14320 Zinc-binding ribosomal protein family protein 0.83 0.31 -0.32
113 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.83 0.31 -0.32
114 AT5G20920 eukaryotic translation initiation factor 2 beta subunit eukaryotic translation initiation
factor 2 beta subunit, embryo
defective 1401		 0.83 0.32 -0.3
115 AT3G62120 Class II aaRS and biotin synthetases superfamily protein 0.83 0.31 -0.31
116 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.83 0.32 -0.34
117 AT3G28900 Ribosomal protein L34e superfamily protein 0.83 0.33 -0.32
118 AT5G52650 RNA binding Plectin/S10 domain-containing protein 0.83 0.33 -0.33
119 AT4G09800 S18 ribosomal protein S18 ribosomal protein 0.83 0.33 -0.29
120 AT1G75560 zinc knuckle (CCHC-type) family protein 0.83 0.33 -0.35
121 AT5G02450 Ribosomal protein L36e family protein 0.83 0.32 -0.31
122 AT3G61960 Protein kinase superfamily protein -0.83 0.32 -0.32
123 AT3G61110 ribosomal protein S27 ribosomal protein S27, ribosomal
protein S27		 0.83 0.35 -0.31
124 AT5G56670 Ribosomal protein S30 family protein 0.83 0.32 -0.31
125 AT4G36210 Protein of unknown function (DUF726) -0.83 0.31 -0.33
126 AT5G11160 adenine phosphoribosyltransferase 5 adenine phosphoribosyltransferase
5		 0.83 0.31 -0.32
127 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.83 0.34 -0.3
128 AT1G26910 Ribosomal protein L16p/L10e family protein ribosomal protein L10 B 0.83 0.31 -0.31
129 AT1G22930 T-complex protein 11 -0.82 0.33 -0.3
130 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.81 0.32 -0.31
131 AT3G24740 Protein of unknown function (DUF1644) -0.81 0.32 -0.33
132 AT3G16940 calmodulin binding;transcription regulators -0.8 0.31 -0.3
133 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.79 0.35 -0.31
134 AT1G03290 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G02880.2); Has 13587 Blast
hits to 10183 proteins in 1114 species: Archae - 257;
Bacteria - 2402; Metazoa - 5637; Fungi - 960; Plants - 675;
Viruses - 54; Other Eukaryotes - 3602 (source: NCBI BLink).		 -0.79 0.32 -0.29
135 AT5G28520 Mannose-binding lectin superfamily protein -0.79 0.33 -0.3
136 AT4G17970 aluminum-activated, malate transporter 12 aluminum-activated, malate
transporter 12, ATALMT12		 -0.79 0.31 -0.3
137 AT4G03030 Galactose oxidase/kelch repeat superfamily protein -0.79 0.33 -0.33
138 AT1G21410 F-box/RNI-like superfamily protein SKP2A -0.78 0.33 -0.33
139 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.78 0.32 -0.32
140 AT2G25625 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED
DURING: LP.06 six leaves visible, LP.04 four leaves
visible, 4 anthesis, petal differentiation and expansion
stage; Has 24 Blast hits to 24 proteins in 9 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.77 0.31 -0.3
141 AT1G08230 Transmembrane amino acid transporter family protein ATGAT1, L-GAMMA-AMINOBUTYRIC ACID
TRANSPORTER 1		 -0.77 0.32 -0.32
142 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.77 0.34 -0.32
143 AT1G17550 homology to ABI2 homology to ABI2 -0.77 0.3 -0.32
144 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.77 0.32 -0.31
145 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.76 0.33 -0.32
146 AT3G08860 PYRIMIDINE 4 PYRIMIDINE 4 -0.76 0.32 -0.32
147 AT1G32740 SBP (S-ribonuclease binding protein) family protein -0.75 0.3 -0.33
148 AT1G31480 shoot gravitropism 2 (SGR2) SHOOT GRAVITROPISM 2 -0.75 0.32 -0.31
149 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.75 0.32 -0.34
150 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.75 0.32 -0.34
151 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein -0.75 0.32 -0.33
152 AT1G07040 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in
187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi
- 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140
(source: NCBI BLink).		 -0.75 0.31 -0.31
153 AT3G06170 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 -0.74 0.31 -0.33
154 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.74 0.3 -0.35
155 AT2G44130 Galactose oxidase/kelch repeat superfamily protein -0.74 0.31 -0.31
156 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.72 0.3 -0.33
157 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 -0.72 0.33 -0.31
158 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.72 0.29 -0.31
159 AT4G03200 catalytics -0.72 0.3 -0.31
160 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.72 0.32 -0.32
161 AT5G54730 homolog of yeast autophagy 18 (ATG18) F ARABIDOPSIS THALIANA HOMOLOG OF
YEAST AUTOPHAGY 18 (ATG18) F,
homolog of yeast autophagy 18
(ATG18) F, homolog of yeast
autophagy 18 (ATG18) F		 -0.71 0.32 -0.29
162 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.7 0.32 -0.3
163 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.7 0.32 -0.32
164 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.7 0.32 -0.33
165 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 -0.7 0.34 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
166 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.78 0.32 -0.31 C0260
167 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		-0.74 0.34 -0.3 C0054
168 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.73 0.33 -0.32 C0257
169 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis -0.72 0.46 -0.43 C0193
170 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		-0.7 0.32 -0.31 C0014