AT5G09920 : ATRPB15.9
Query Information
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AGICode AT5G09920
Description RNA polymerase II, Rpb4, core protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G09920 RNA polymerase II, Rpb4, core protein ATRPB15.9, NRPB4, RPB15.9,
RPB15.9.9		 1 0.29 -0.32
2 AT1G31940 unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.33 -0.32
3 AT5G46860 Syntaxin/t-SNARE family protein ARABIDOPSIS THALIANA SYNTAXIN OF
PLANTS 22, ARABIDOPSIS THALIANA
VACUOLAR MORPHOLOGY 3, SHOOT
GRAVITROPISM 3, SYNTAXIN OF PLANTS
22, VACUOLAR MORPHOLOGY 3		 0.77 0.31 -0.31
4 AT3G15710 Peptidase S24/S26A/S26B/S26C family protein 0.75 0.32 -0.29
5 AT3G52220 CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain
(InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins
in 346 species: Archae - 10; Bacteria - 184; Metazoa -
3955; Fungi - 1221; Plants - 712; Viruses - 24; Other
Eukaryotes - 2776 (source: NCBI BLink).		 0.74 0.3 -0.31
6 AT1G15370 SNARE-like superfamily protein 0.74 0.3 -0.32
7 AT5G61760 inositol polyphosphate kinase 2 beta ARABIDOPSIS THALIANA INOSITOL
POLYPHOSPHATE KINASE 2 BETA,
INOSITOL POLYPHOSPHATE KINASE 2
BETA, inositol polyphosphate
kinase 2 beta		 0.74 0.32 -0.34
8 AT2G25190 PPPDE putative thiol peptidase family protein 0.73 0.29 -0.31
9 AT3G62560 Ras-related small GTP-binding family protein 0.73 0.32 -0.34
10 AT3G58770 unknown protein; Has 38 Blast hits to 36 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.73 0.3 -0.3
11 AT4G01370 MAP kinase 4 MAP kinase 4, MAP kinase 4 0.72 0.3 -0.31
12 AT5G14890 NHL domain-containing protein 0.72 0.32 -0.32
13 AT5G50870 ubiquitin-conjugating enzyme 27 ubiquitin-conjugating enzyme 27 0.71 0.29 -0.31
14 AT2G33220 GRIM-19 protein 0.7 0.31 -0.32
15 AT5G49550 Putative homolog of mammalian BLOC-1 Subunit 2. Protein -
protein interaction with BLOS1.		 BLOC subunit 2 0.7 0.32 -0.32
16 AT5G39510 Vesicle transport v-SNARE family protein VESICLE TRANSPORT V-SNARE 11,
ATVTI1A, SHOOT GRAVITROPSIM 4,
VESICLE TRANSPORT V-SNARE 11,
VTI1A, ZIG, ZIG1		 0.7 0.33 -0.32
17 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.7 0.32 -0.33
18 AT4G34050 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 caffeoyl coenzyme A
O-methyltransferase 1		 0.69 0.31 -0.31
19 AT4G23930 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 0.69 0.31 -0.31
20 AT1G54140 TATA binding protein associated factor 21kDa subunit TBP-ASSOCIATED FACTOR 9, TATA
binding protein associated factor
21kDa subunit		 0.69 0.31 -0.34
21 AT5G54350 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: C2H2-like zinc
finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.69 0.31 -0.31
22 AT1G05010 ethylene-forming enzyme ethylene forming enzyme, EAT1,
ethylene-forming enzyme		 0.69 0.3 -0.29
23 AT1G19240 unknown protein; Has 24 Blast hits to 24 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.31 -0.3
24 AT2G03200 Eukaryotic aspartyl protease family protein -0.69 0.3 -0.33
25 AT5G56130 Transducin/WD40 repeat-like superfamily protein AtTEX1, TEX1, THO3 0.68 0.33 -0.31
26 AT3G19950 RING/U-box superfamily protein 0.68 0.3 -0.3
27 AT5G39250 F-box family protein 0.68 0.32 -0.3
28 AT2G45980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ATG8-interacting protein 1 0.68 0.31 -0.31
29 AT3G62080 SNF7 family protein 0.68 0.29 -0.32
30 AT4G30010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39
proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.68 0.33 -0.31
31 AT1G25420 Regulator of Vps4 activity in the MVB pathway protein 0.67 0.35 -0.33
32 AT2G36670 Eukaryotic aspartyl protease family protein -0.67 0.32 -0.32
33 AT5G25360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32342.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.67 0.31 -0.31
34 AT2G23530 Zinc-finger domain of monoamine-oxidase A repressor R1 -0.66 0.31 -0.33
35 AT2G36060 MMS ZWEI homologue 3 MMS ZWEI homologue 3, UBIQUITIN E2
VARIANT 1C		 0.66 0.32 -0.29
36 AT5G42000 ORMDL family protein 0.66 0.32 -0.32
37 AT1G68090 annexin 5 annexin 5, ANNEXIN ARABIDOPSIS
THALIANA 5		 -0.66 0.35 -0.33
38 AT2G35460 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.66 0.33 -0.32
39 AT1G17890 NAD(P)-binding Rossmann-fold superfamily protein GER2 0.66 0.31 -0.31
40 AT1G23220 Dynein light chain type 1 family protein 0.66 0.31 -0.33
41 AT1G62410 MIF4G domain-containing protein 0.66 0.29 -0.3
42 AT5G22555 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.65 0.32 -0.31
43 AT3G25850 Cysteine/Histidine-rich C1 domain family protein 0.65 0.34 -0.34
44 AT1G21090 Cupredoxin superfamily protein -0.65 0.31 -0.32
45 AT3G26550 Cysteine/Histidine-rich C1 domain family protein -0.65 0.32 -0.32
46 AT3G21175 ZIM-like 1 GATA TRANSCRIPTION FACTOR 24,
TIFY2B, ZIM LIKE 1, ZIM-like 1		 0.65 0.34 -0.33
47 AT5G51880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.65 0.3 -0.33
48 AT5G53470 acyl-CoA binding protein 1 ACYL-COA BINDING PROTEIN, acyl-CoA
binding protein 1		 0.65 0.32 -0.33
49 AT4G33720 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.64 0.31 -0.3
50 AT4G16444 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.64 0.34 -0.32
51 AT4G10640 IQ-domain 16 IQ-domain 16 -0.64 0.3 -0.3
52 AT2G39840 type one serine/threonine protein phosphatase 4 type one serine/threonine protein
phosphatase 4		 0.64 0.31 -0.3
53 AT5G02920 F-box/RNI-like superfamily protein -0.64 0.32 -0.31
54 AT3G32220 transposable element gene 0.64 0.34 -0.33
55 AT1G55940 cytochrome P450, family 708, subfamily A, polypeptide 1 cytochrome P450, family 708,
subfamily A, polypeptide 1		 -0.64 0.31 -0.33
56 AT3G46010 actin depolymerizing factor 1 actin depolymerizing factor 1,
atadf, ATADF1		 0.64 0.3 -0.31
57 AT2G25820 Integrase-type DNA-binding superfamily protein ethylene and salt inducible 2 0.64 0.33 -0.33
58 AT3G56380 response regulator 17 response regulator 17, response
regulator 17		 -0.64 0.31 -0.32
59 AT2G19310 HSP20-like chaperones superfamily protein 0.63 0.32 -0.32
60 AT5G47310 PPPDE putative thiol peptidase family protein 0.63 0.31 -0.31
61 AT5G67530 plant U-box 49 PLANT U-BOX 49, plant U-box 49 0.63 0.29 -0.31
62 AT5G38500 Domain of unknown function (DUF313) -0.63 0.34 -0.31
63 AT2G30240 Cation/hydrogen exchanger family protein ATCHX13, CATION/H+ EXCHANGER 13 0.63 0.31 -0.33
64 AT1G72570 Integrase-type DNA-binding superfamily protein 0.63 0.31 -0.31
65 AT1G19120 Small nuclear ribonucleoprotein family protein 0.63 0.3 -0.33
66 AT5G10880 tRNA synthetase-related / tRNA ligase-related -0.63 0.3 -0.32
67 AT4G27750 binding IMPAIRED SUCROSE INDUCTION 1 0.63 0.32 -0.33
68 AT3G59810 Small nuclear ribonucleoprotein family protein 0.63 0.31 -0.31
69 AT1G18610 Galactose oxidase/kelch repeat superfamily protein -0.63 0.33 -0.33
70 AT1G06490 glucan synthase-like 7 Arabidopsis thaliana glucan
synthase-like 7, atgsl7, callose
synthase 7, gsl07, glucan
synthase-like 7, glucan
synthase-like 7		 -0.62 0.32 -0.3
71 AT5G06520 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 0.62 0.32 -0.32
72 AT2G26970 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.62 0.31 -0.32
73 AT5G41320 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.62 0.34 -0.31
74 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.62 0.32 -0.31
75 AT4G28420 Tyrosine transaminase family protein -0.62 0.3 -0.3
76 AT1G60430 actin-related protein C3 actin-related protein C3 0.62 0.3 -0.31
77 AT1G65940 pseudogene, similar to Dof zinc finger protein, blastp
match of 61% identity and 1.7e-10 P-value to
GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein
{Oryza sativa}		 0.62 0.32 -0.32
78 AT3G43740 Leucine-rich repeat (LRR) family protein 0.62 0.32 -0.31
79 AT3G60480 unknown protein; Has 17 Blast hits to 17 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.62 0.31 -0.31
80 AT3G20020 protein arginine methyltransferase 6 ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 6,
protein arginine methyltransferase
6		 -0.61 0.31 -0.3
81 AT2G27395 pseudogene of cysteine protease-related -0.61 0.31 -0.33
82 AT5G28930 transposable element gene -0.6 0.31 -0.3
83 AT5G53635 F-box/RNI-like/FBD-like domains-containing protein -0.6 0.32 -0.31
84 AT3G08700 ubiquitin-conjugating enzyme 12 ubiquitin-conjugating enzyme 12 -0.6 0.32 -0.31
85 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.3 -0.31
86 AT4G31940 cytochrome P450, family 82, subfamily C, polypeptide 4 cytochrome P450, family 82,
subfamily C, polypeptide 4		 -0.6 0.32 -0.33
87 AT1G23520 Domain of unknown function (DUF220) -0.59 0.32 -0.31
88 AT1G77730 Pleckstrin homology (PH) domain superfamily protein -0.59 0.32 -0.31
89 AT3G20400 F-box associated ubiquitination effector family protein EMBRYO DEFECTIVE 2743 -0.59 0.35 -0.29
90 AT5G40960 Protein of unknown function (DUF 3339) -0.59 0.31 -0.36
91 AT1G49960 Xanthine/uracil permease family protein -0.59 0.31 -0.33
92 AT2G29130 laccase 2 ATLAC2, laccase 2 -0.58 0.31 -0.31
93 AT3G54320 Integrase-type DNA-binding superfamily protein ACTIVATOR OF SPO(MIN)::LUC1,
ATWRI1, WRINKLED, WRINKLED 1		 -0.58 0.33 -0.31
94 AT4G15460 glycine-rich protein -0.58 0.29 -0.32
95 AT2G15720 transposable element gene -0.58 0.3 -0.31
96 AT1G08600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATRX, CHR20 -0.58 0.33 -0.33
97 AT1G38950 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.57 0.29 -0.33
98 AT1G30560 Major facilitator superfamily protein glycerol-3-phosphate permease 3,
glycerol-3-phosphate permease 3		 -0.57 0.3 -0.32
99 AT2G03260 EXS (ERD1/XPR1/SYG1) family protein -0.57 0.32 -0.29
100 AT1G41870 transposable element gene -0.57 0.31 -0.31
101 AT4G02660 Beige/BEACH domain ;WD domain, G-beta repeat protein -0.57 0.34 -0.32
102 AT3G22350 F-box and associated interaction domains-containing protein -0.56 0.33 -0.32
103 AT3G03080 Zinc-binding dehydrogenase family protein -0.56 0.3 -0.31
104 AT1G11690 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G20350.1); Has 5959 Blast hits
to 4807 proteins in 476 species: Archae - 156; Bacteria -
436; Metazoa - 2789; Fungi - 309; Plants - 336; Viruses -
9; Other Eukaryotes - 1924 (source: NCBI BLink).		 -0.56 0.32 -0.32
105 AT5G15070 Phosphoglycerate mutase-like family protein -0.56 0.31 -0.29
106 AT5G46910 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 -0.56 0.3 -0.32
107 AT4G28010 Tetratricopeptide repeat (TPR)-like superfamily protein -0.56 0.32 -0.32
108 AT1G79620 Leucine-rich repeat protein kinase family protein -0.55 0.31 -0.32
109 AT1G68750 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4,
phosphoenolpyruvate carboxylase 4		 -0.55 0.32 -0.35
110 AT5G22960 alpha/beta-Hydrolases superfamily protein -0.55 0.32 -0.31
111 AT3G63350 winged-helix DNA-binding transcription factor family
protein		 AT-HSFA7B, HEAT SHOCK
TRANSCRIPTION FACTOR A7B		 -0.55 0.31 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
112 C0240 Stigmasterol - Stigmasterol plant sterol biosynthesis -0.6 0.44 -0.43 C0240