AT5G08610 : PIGMENT DEFECTIVE 340
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AGICode AT5G08610
Description P-loop containing nucleoside triphosphate hydrolases superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
PIGMENT DEFECTIVE 340 1 0.31 -0.3
2 AT3G21300 RNA methyltransferase family protein 0.89 0.34 -0.32
3 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22
0.89 0.31 -0.32
4 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.88 0.31 -0.29
5 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein
CLUMPED CHLOROPLASTS 1, Phox2 0.88 0.31 -0.32
6 AT1G18090 5'-3' exonuclease family protein 0.88 0.31 -0.34
7 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.87 0.31 -0.31
8 AT1G69950 transposable element gene 0.87 0.31 -0.31
9 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.87 0.32 -0.33
10 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159
ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86
0.87 0.33 -0.3
11 AT5G57900 SKP1 interacting partner 1 SKP1 interacting partner 1 -0.86 0.33 -0.32
12 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12
0.86 0.32 -0.35
13 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).
0.86 0.32 -0.3
14 AT4G25990 CCT motif family protein CIL 0.86 0.32 -0.35
15 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1
0.86 0.32 -0.33
16 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138
0.85 0.31 -0.3
17 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.85 0.3 -0.32
18 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.85 0.31 -0.31
19 AT3G10690 DNA GYRASE A DNA GYRASE A 0.85 0.31 -0.31
20 AT3G56680 Single-stranded nucleic acid binding R3H protein 0.84 0.3 -0.33
21 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1
0.84 0.32 -0.31
22 AT4G18750 Pentatricopeptide repeat (PPR) superfamily protein DEFECTIVELY ORGANIZED TRIBUTARIES
4
0.84 0.31 -0.29
23 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.84 0.31 -0.32
24 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii
0.84 0.31 -0.3
25 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.83 0.3 -0.33
26 AT5G53620 unknown protein; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; Has 28929 Blast hits to 19542 proteins in
1425 species: Archae - 211; Bacteria - 3079; Metazoa -
14558; Fungi - 2157; Plants - 966; Viruses - 80; Other
Eukaryotes - 7878 (source: NCBI BLink).
0.83 0.32 -0.33
27 AT2G04030 Chaperone protein htpG family protein HEAT SHOCK PROTEIN 90.5, CR88,
EMBRYO DEFECTIVE 1956, HEAT SHOCK
PROTEIN 88.1, HEAT SHOCK PROTEIN
90.5
0.83 0.32 -0.31
28 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases
embryo defective 2247 0.83 0.33 -0.33
29 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III
MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III
0.83 0.31 -0.3
30 AT3G57430 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 84 0.83 0.33 -0.3
31 AT2G32150 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein
-0.82 0.29 -0.33
32 AT5G60990 DEA(D/H)-box RNA helicase family protein 0.82 0.33 -0.34
33 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
0.82 0.32 -0.32
34 AT4G22820 A20/AN1-like zinc finger family protein -0.82 0.32 -0.29
35 AT5G58740 HSP20-like chaperones superfamily protein -0.82 0.31 -0.32
36 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1
0.81 0.31 -0.31
37 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2
-0.81 0.31 -0.33
38 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6
0.81 0.33 -0.32
39 AT5G54080 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase -0.81 0.34 -0.31
40 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.81 0.31 -0.35
41 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.81 0.33 -0.3
42 AT1G48650 DEA(D/H)-box RNA helicase family protein 0.81 0.29 -0.31
43 AT4G32420 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein
0.81 0.32 -0.3
44 AT1G48570 zinc finger (Ran-binding) family protein 0.81 0.31 -0.31
45 AT3G54090 fructokinase-like 1 fructokinase-like 1 0.81 0.31 -0.31
46 AT1G06950 translocon at the inner envelope membrane of chloroplasts
110
ARABIDOPSIS THALIANA TRANSLOCON AT
THE INNER ENVELOPE MEMBRANE OF
CHLOROPLASTS 110, translocon at
the inner envelope membrane of
chloroplasts 110
0.81 0.3 -0.3
47 AT3G61770 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein
0.81 0.3 -0.31
48 AT4G30700 Pentatricopeptide repeat (PPR) superfamily protein 0.8 0.31 -0.3
49 AT5G05110 Cystatin/monellin family protein -0.8 0.32 -0.31
50 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1
0.8 0.29 -0.32
51 AT1G79080 Pentatricopeptide repeat (PPR) superfamily protein 0.8 0.29 -0.31
52 AT5G13650 elongation factor family protein SUPPRESSOR OF VARIEGATION 3 0.8 0.31 -0.33
53 AT1G72550 tRNA synthetase beta subunit family protein 0.8 0.32 -0.29
54 AT3G16080 Zinc-binding ribosomal protein family protein 0.8 0.33 -0.31
55 AT3G17970 translocon at the outer membrane of chloroplasts 64-III translocon at the outer membrane
of chloroplasts 64-III, translocon
at the outer membrane of
chloroplasts 64-III
0.8 0.32 -0.31
56 AT1G76150 enoyl-CoA hydratase 2 ATECH2, enoyl-CoA hydratase 2 -0.8 0.32 -0.32
57 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.79 0.33 -0.32
58 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3
-0.79 0.29 -0.29
59 AT3G56310 Melibiase family protein -0.79 0.32 -0.32
60 AT3G16260 tRNAse Z4 tRNAse Z4 0.79 0.33 -0.32
61 AT4G38050 Xanthine/uracil permease family protein 0.79 0.3 -0.31
62 AT5G64370 beta-ureidopropionase beta-ureidopropionase, PYRIMIDINE
3
-0.78 0.31 -0.32
63 AT5G48180 nitrile specifier protein 5 nitrile specifier protein 5 -0.78 0.32 -0.34
64 AT1G10850 Leucine-rich repeat protein kinase family protein 0.78 0.33 -0.31
65 AT4G01610 Cysteine proteinases superfamily protein -0.78 0.32 -0.31
66 AT5G27440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: shoot apex, shoot, flower, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, E expanded cotyledon stage; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).
0.78 0.31 -0.33
67 AT3G21110 purin 7 ATPURC, purin 7, PURIN C 0.78 0.31 -0.32
68 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
-0.78 0.36 -0.32
69 AT1G09830 Glycinamide ribonucleotide (GAR) synthetase 0.78 0.32 -0.3
70 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
-0.78 0.3 -0.32
71 AT1G13990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3110 (InterPro:IPR021503);
Has 25 Blast hits to 25 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).
-0.78 0.33 -0.29
72 AT5G04040 Patatin-like phospholipase family protein SUGAR-DEPENDENT1 -0.78 0.33 -0.33
73 AT3G14900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: embryo development; LOCATED IN: chloroplast;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13
growth stages; Has 17135 Blast hits to 10204 proteins in
644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536;
Fungi - 2506; Plants - 1043; Viruses - 361; Other
Eukaryotes - 5958 (source: NCBI BLink).
EMBRYO DEFECTIVE 3120 0.78 0.3 -0.31
74 AT1G71460 Pentatricopeptide repeat (PPR-like) superfamily protein 0.78 0.32 -0.33
75 AT2G25100 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein
0.78 0.34 -0.32
76 AT5G23070 Thymidine kinase 0.78 0.34 -0.33
77 AT4G10760 mRNAadenosine methylase EMBRYO DEFECTIVE 1706,
mRNAadenosine methylase
0.77 0.31 -0.35
78 AT3G23920 beta-amylase 1 beta-amylase 1, BETA-AMYLASE 7,
TR-BAMY
-0.77 0.32 -0.32
79 AT2G01350 quinolinate phoshoribosyltransferase quinolinate
phoshoribosyltransferase
-0.77 0.33 -0.29
80 AT3G10250 Plant protein 1589 of unknown function -0.77 0.32 -0.33
81 AT3G51000 alpha/beta-Hydrolases superfamily protein -0.77 0.33 -0.32
82 AT3G04340 FtsH extracellular protease family embryo defective 2458 0.77 0.31 -0.31
83 AT5G19920 Transducin/WD40 repeat-like superfamily protein 0.77 0.31 -0.33
84 AT1G62085 Mitochondrial transcription termination factor family
protein
0.77 0.32 -0.31
85 AT1G42550 plastid movement impaired1 PLASTID MOVEMENT IMPAIRED1 0.77 0.33 -0.31
86 AT3G02250 O-fucosyltransferase family protein 0.77 0.34 -0.32
87 AT4G31210 DNA topoisomerase, type IA, core 0.77 0.32 -0.31
88 AT2G25280 CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of
ErbB2-driven cell motility (Memo), related
(InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins
in 474 species: Archae - 213; Bacteria - 366; Metazoa -
159; Fungi - 135; Plants - 54; Viruses - 0; Other
Eukaryotes - 147 (source: NCBI BLink).
-0.77 0.32 -0.31
89 AT3G02060 DEAD/DEAH box helicase, putative 0.77 0.32 -0.32
90 AT4G02680 ETO1-like 1 ETO1-like 1 0.77 0.32 -0.33
91 AT3G20440 Alpha amylase family protein BRANCHING ENZYME 1, EMBRYO
DEFECTIVE 2729
0.77 0.34 -0.32
92 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein 0.77 0.31 -0.31
93 AT3G11660 NDR1/HIN1-like 1 NDR1/HIN1-like 1 -0.77 0.31 -0.32
94 AT3G23570 alpha/beta-Hydrolases superfamily protein -0.76 0.32 -0.31
95 AT1G01720 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein
Arabidopsis NAC domain containing
protein 2, ATAF1
-0.76 0.31 -0.35
96 AT1G21000 PLATZ transcription factor family protein -0.76 0.31 -0.3
97 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22
-0.76 0.29 -0.32
98 AT2G22690 zinc ion binding -0.76 0.32 -0.32
99 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein
-0.76 0.29 -0.31
100 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8
-0.76 0.3 -0.32
101 AT5G54300 Protein of unknown function (DUF761) -0.76 0.3 -0.32
102 AT2G24040 Low temperature and salt responsive protein family -0.76 0.31 -0.32
103 AT5G12200 pyrimidine 2 pyrimidine 2 -0.75 0.32 -0.32
104 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.75 0.32 -0.32
105 AT4G30550 Class I glutamine amidotransferase-like superfamily protein gamma-glutamyl peptidase 3 -0.75 0.32 -0.3
106 AT3G11100 sequence-specific DNA binding transcription factors -0.75 0.29 -0.33
107 AT3G54300 vesicle-associated membrane protein 727 vesicle-associated membrane
protein 727, VAMP727,
vesicle-associated membrane
protein 727
-0.75 0.29 -0.31
108 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).
-0.75 0.34 -0.32
109 AT5G17650 glycine/proline-rich protein -0.75 0.32 -0.32
110 AT1G74410 RING/U-box superfamily protein -0.74 0.32 -0.33
111 AT1G02305 Cysteine proteinases superfamily protein -0.74 0.31 -0.31
112 AT2G47710 Adenine nucleotide alpha hydrolases-like superfamily
protein
-0.74 0.32 -0.3
113 AT1G47128 Granulin repeat cysteine protease family protein responsive to dehydration 21,
RESPONSIVE TO DEHYDRATION 21A
-0.74 0.31 -0.32
114 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8
-0.74 0.31 -0.32
115 AT3G17940 Galactose mutarotase-like superfamily protein -0.74 0.32 -0.32
116 AT1G79590 syntaxin of plants 52 ATSYP52, syntaxin of plants 52 -0.74 0.31 -0.33
117 AT5G10300 methyl esterase 5 AtHNL, ARABIDOPSIS THALIANA METHYL
ESTERASE 5, HYDROXYNITRILE LYASE,
methyl esterase 5
-0.74 0.3 -0.31
118 AT1G73500 MAP kinase kinase 9 ATMKK9, MAP kinase kinase 9 -0.73 0.32 -0.31
119 AT3G23600 alpha/beta-Hydrolases superfamily protein -0.73 0.3 -0.32
120 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
-0.73 0.3 -0.29
121 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3
-0.73 0.3 -0.29
122 AT5G66730 C2H2-like zinc finger protein ENHYDROUS, INDETERMINATE DOMAIN 1 -0.73 0.33 -0.32
123 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.73 0.31 -0.34
124 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.73 0.32 -0.34
125 AT1G45150 unknown protein; Has 219 Blast hits to 202 proteins in 78
species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi -
0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source:
NCBI BLink).
-0.73 0.32 -0.32
126 AT5G06870 polygalacturonase inhibiting protein 2 ARABIDOPSIS POLYGALACTURONASE
INHIBITING PROTEIN 2,
polygalacturonase inhibiting
protein 2
-0.73 0.31 -0.32
127 AT5G05230 RING/U-box superfamily protein -0.72 0.34 -0.3
128 AT1G55920 serine acetyltransferase 2;1 serine acetyltransferase 2;1,
SERINE ACETYLTRANSFERASE 1, SERINE
ACETYLTRANSFERASE 5, serine
acetyltransferase 2;1
-0.72 0.3 -0.32
129 AT5G18170 glutamate dehydrogenase 1 glutamate dehydrogenase 1 -0.72 0.31 -0.33
130 AT1G06800 alpha/beta-Hydrolases superfamily protein phospholipase A I gamma 1 -0.72 0.32 -0.33
131 AT5G61640 peptidemethionine sulfoxide reductase 1 ARABIDOPSIS THALIANA METHIONINE
SULFOXIDE REDUCTASE A1,
peptidemethionine sulfoxide
reductase 1
-0.72 0.33 -0.31
132 AT1G55020 lipoxygenase 1 ARABIDOPSIS LIPOXYGENASE 1,
lipoxygenase 1
-0.72 0.32 -0.31
133 AT4G38810 Calcium-binding EF-hand family protein -0.72 0.3 -0.31
134 AT3G51840 acyl-CoA oxidase 4 acyl-CoA oxidase 4, ATG6, ATSCX -0.72 0.31 -0.33
135 AT4G35480 RING-H2 finger A3B RING-H2 finger A3B -0.71 0.3 -0.3
136 AT3G10260 Reticulon family protein -0.71 0.33 -0.32
137 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13
-0.71 0.31 -0.31
138 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5
-0.71 0.31 -0.31
139 AT1G16180 Serinc-domain containing serine and sphingolipid
biosynthesis protein
-0.71 0.32 -0.28
140 AT2G36950 Heavy metal transport/detoxification superfamily protein -0.71 0.33 -0.31