AT5G07190 : seed gene 3
Query Information
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AGICode AT5G07190
Description seed gene 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G07190 seed gene 3 seed gene 3 1 0.32 -0.32
2 AT3G06580 Mevalonate/galactokinase family protein GALACTOSE KINASE 1, GALK -0.69 0.31 -0.33
3 AT3G46010 actin depolymerizing factor 1 actin depolymerizing factor 1,
atadf, ATADF1		 -0.69 0.33 -0.29
4 AT5G18620 chromatin remodeling factor17 chromatin remodeling factor17 0.69 0.31 -0.32
5 AT1G30910 Molybdenum cofactor sulfurase family protein -0.67 0.29 -0.31
6 AT4G02010 Protein kinase superfamily protein 0.66 0.32 -0.31
7 AT2G19310 HSP20-like chaperones superfamily protein -0.65 0.31 -0.33
8 AT5G13900 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.65 0.33 -0.33
9 AT2G35490 Plastid-lipid associated protein PAP / fibrillin family
protein		 -0.65 0.3 -0.31
10 AT1G02475 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.65 0.31 -0.3
11 AT5G04850 SNF7 family protein VPS60.2 -0.65 0.34 -0.32
12 AT5G48810 cytochrome B5 isoform D ATB5-B, ARABIDOPSIS CYTOCHROME B5
ISOFORM D, B5 #3, cytochrome B5
isoform D		 -0.64 0.33 -0.31
13 AT2G32520 alpha/beta-Hydrolases superfamily protein -0.64 0.31 -0.3
14 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 0.64 0.34 -0.29
15 AT2G46580 Pyridoxamine 5'-phosphate oxidase family protein -0.64 0.31 -0.31
16 AT5G45210 Disease resistance protein (TIR-NBS-LRR class) family 0.64 0.31 -0.31
17 AT4G29080 phytochrome-associated protein 2 indole-3-acetic acid inducible 27,
phytochrome-associated protein 2		 0.64 0.31 -0.32
18 AT5G58800 Quinone reductase family protein -0.63 0.3 -0.3
19 AT5G62650 Tic22-like family protein -0.63 0.3 -0.31
20 AT4G16130 arabinose kinase arabinose kinase, ATISA1, ISA1 -0.63 0.31 -0.31
21 AT3G60480 unknown protein; Has 17 Blast hits to 17 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.63 0.31 -0.3
22 AT2G24820 translocon at the inner envelope membrane of chloroplasts
55-II		 translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55,
translocon at the inner envelope
membrane of chloroplasts 55-II		 -0.62 0.32 -0.3
23 AT5G04260 WCRKC thioredoxin 2 WCRKC thioredoxin 2 -0.62 0.31 -0.32
24 AT2G01210 Leucine-rich repeat protein kinase family protein 0.62 0.32 -0.34
25 AT2G01830 CHASE domain containing histidine kinase protein ARABIDOPSIS HISTIDINE KINASE 4,
ATCRE1, CYTOKININ RESPONSE 1,
WOODEN LEG, WOODEN LEG 1		 0.62 0.33 -0.32
26 AT5G09740 histone acetyltransferase of the MYST family 2 histone acetyltransferase of the
MYST family 2		 -0.62 0.32 -0.31
27 AT2G18250 4-phosphopantetheine adenylyltransferase 4-phosphopantetheine
adenylyltransferase,
4-phosphopantetheine
adenylyltransferase		 -0.61 0.32 -0.3
28 AT3G53510 ABC-2 type transporter family protein ATP-binding cassette G20 0.61 0.31 -0.32
29 AT3G11290 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits
to 435 proteins in 28 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 -0.61 0.31 -0.31
30 AT2G35360 ubiquitin family protein -0.61 0.32 -0.32
31 AT1G22140 unknown protein; Has 40 Blast hits to 40 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.61 0.31 -0.29
32 AT4G32880 homeobox gene 8 homeobox gene 8, ATHB8, homeobox
gene 8		 0.61 0.29 -0.3
33 AT1G79160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits
to 102 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.31 -0.32
34 AT5G58300 Leucine-rich repeat protein kinase family protein 0.6 0.34 -0.31
35 AT4G36400 FAD-linked oxidases family protein D-2-hydroxyglutarate dehydrogenase -0.6 0.33 -0.3
36 AT4G00895 ATPase, F1 complex, OSCP/delta subunit protein -0.6 0.31 -0.32
37 AT1G26160 Metal-dependent phosphohydrolase -0.59 0.32 -0.31
38 AT1G60870 maternal effect embryo arrest 9 maternal effect embryo arrest 9 -0.59 0.31 -0.31
39 AT5G16660 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, membrane,
chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.3 -0.34
40 AT1G53650 CTC-interacting domain 8 CTC-interacting domain 8 -0.59 0.32 -0.3
41 AT2G37920 copper ion transmembrane transporters embryo defective 1513 -0.59 0.32 -0.31
42 AT5G65260 RNA-binding (RRM/RBD/RNP motifs) family protein -0.59 0.32 -0.31
43 AT3G62080 SNF7 family protein -0.59 0.31 -0.33
44 AT1G43130 like COV 2 like COV 2 -0.59 0.3 -0.31
45 AT5G03430 phosphoadenosine phosphosulfate (PAPS) reductase family
protein		 -0.59 0.3 -0.32
46 AT5G39730 AIG2-like (avirulence induced gene) family protein -0.59 0.3 -0.33
47 AT4G37200 Thioredoxin superfamily protein HIGH CHLOROPHYLL FLUORESCENCE 164 -0.59 0.33 -0.32
48 AT1G04290 Thioesterase superfamily protein -0.59 0.31 -0.33
49 AT2G44530 Phosphoribosyltransferase family protein -0.58 0.32 -0.3
50 AT1G02560 nuclear encoded CLP protease 5 nuclear encoded CLP protease 5,
NUCLEAR-ENCODED CLPP 1, NUCLEAR
CLPP 5		 -0.58 0.31 -0.31
51 AT3G10850 Metallo-hydrolase/oxidoreductase superfamily protein GLYOXALASE 2-2, GLY2 -0.58 0.3 -0.32
52 AT2G36680 Modifier of rudimentary (Mod(r)) protein -0.58 0.32 -0.33
53 AT5G14500 aldose 1-epimerase family protein -0.58 0.31 -0.31
54 AT1G25420 Regulator of Vps4 activity in the MVB pathway protein -0.57 0.31 -0.31
55 AT2G35770 serine carboxypeptidase-like 28 serine carboxypeptidase-like 28 0.57 0.3 -0.31
56 AT3G26085 CAAX amino terminal protease family protein -0.57 0.3 -0.3
57 AT5G10870 chorismate mutase 2 chorismate mutase 2, chorismate
mutase 2		 -0.57 0.3 -0.31
58 AT5G13520 peptidase M1 family protein 0.57 0.3 -0.31
59 AT3G52340 sucrose-6F-phosphate phosphohydrolase 2 SUCROSE-PHOSPHATASE 2,
sucrose-6F-phosphate
phosphohydrolase 2		 -0.57 0.3 -0.32
60 AT4G33790 Jojoba acyl CoA reductase-related male sterility protein ECERIFERUM 4, FATTY ACID REDUCTASE
3, G7		 0.57 0.31 -0.3
61 AT3G61160 Protein kinase superfamily protein 0.57 0.3 -0.31
62 AT3G54320 Integrase-type DNA-binding superfamily protein ACTIVATOR OF SPO(MIN)::LUC1,
ATWRI1, WRINKLED, WRINKLED 1		 0.57 0.31 -0.29
63 AT1G60430 actin-related protein C3 actin-related protein C3 -0.57 0.3 -0.33
64 AT1G23010 Cupredoxin superfamily protein Low Phosphate Root1 0.57 0.31 -0.3
65 AT2G26480 UDP-glucosyl transferase 76D1 UDP-glucosyl transferase 76D1 0.56 0.3 -0.32
66 AT1G10750 Protein of Unknown Function (DUF239) 0.56 0.31 -0.33
67 AT2G46735 unknown protein; Has 14 Blast hits to 14 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.33 -0.3
68 AT5G64440 fatty acid amide hydrolase fatty acid amide hydrolase, fatty
acid amide hydrolase		 -0.56 0.31 -0.3
69 AT1G34650 homeodomain GLABROUS 10 homeodomain GLABROUS 10 0.56 0.31 -0.3
70 AT1G28650 GDSL-like Lipase/Acylhydrolase superfamily protein 0.56 0.3 -0.34
71 AT1G54920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.56 0.31 -0.3
72 AT1G77790 Glycosyl hydrolase superfamily protein -0.56 0.33 -0.32
73 AT5G61580 phosphofructokinase 4 phosphofructokinase 4 -0.56 0.31 -0.32
74 AT3G15353 metallothionein 3 ATMT3, metallothionein 3 -0.56 0.33 -0.32
75 AT2G32280 Protein of unknown function (DUF1218) 0.56 0.29 -0.32
76 AT2G42240 RNA-binding (RRM/RBD/RNP motifs) family protein -0.56 0.3 -0.3
77 AT3G09970 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.55 0.31 -0.32
78 AT5G52260 myb domain protein 19 myb domain protein 19, myb domain
protein 19		 0.55 0.31 -0.31
79 AT2G02050 NADH-ubiquinone oxidoreductase B18 subunit, putative -0.55 0.32 -0.31
80 AT5G50720 HVA22 homologue E ARABIDOPSIS THALIANA HVA22
HOMOLOGUE E, HVA22 homologue E		 0.55 0.32 -0.32
81 AT5G07130 laccase 13 laccase 13 0.55 0.33 -0.3
82 AT2G01220 Nucleotidylyl transferase superfamily protein -0.55 0.3 -0.34
83 AT3G28970 Domain of unknown function (DUF298) antiauxin-resistant 3 -0.55 0.35 -0.32
84 AT2G31670 Stress responsive alpha-beta barrel domain protein -0.55 0.33 -0.31
85 AT1G67760 TCP-1/cpn60 chaperonin family protein 0.55 0.33 -0.31
86 AT1G67720 Leucine-rich repeat protein kinase family protein -0.55 0.33 -0.32
87 AT2G20740 Tetraspanin family protein -0.55 0.31 -0.3
88 AT5G60600 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CHLOROPLAST BIOGENESIS 4,
CONSTITUTIVE SUBTILISIN 3, GCPE,
4-hydroxy-3-methylbut-2-enyl
diphosphate synthase, ISPG		 -0.55 0.32 -0.3
89 AT3G56460 GroES-like zinc-binding alcohol dehydrogenase family
protein		 -0.55 0.33 -0.29
90 AT4G02670 indeterminate(ID)-domain 12 indeterminate(ID)-domain 12,
indeterminate(ID)-domain 12		 -0.55 0.31 -0.3
91 AT4G33160 F-box family protein 0.54 0.31 -0.31
92 AT3G63350 winged-helix DNA-binding transcription factor family
protein		 AT-HSFA7B, HEAT SHOCK
TRANSCRIPTION FACTOR A7B		 0.54 0.31 -0.31
93 AT3G30620 transposable element gene 0.52 0.31 -0.3
94 AT1G08500 early nodulin-like protein 18 AtENODL18, early nodulin-like
protein 18		 0.52 0.31 -0.32
95 AT2G30560 glycine-rich protein 0.52 0.31 -0.31
96 AT3G62610 myb domain protein 11 myb domain protein 11, myb domain
protein 11, PRODUCTION OF FLAVONOL
GLYCOSIDES 2		 0.52 0.31 -0.33
97 AT3G29570 unknown protein; Has 271 Blast hits to 164 proteins in 59
species: Archae - 0; Bacteria - 19; Metazoa - 88; Fungi -
42; Plants - 45; Viruses - 9; Other Eukaryotes - 68
(source: NCBI BLink).		 0.52 0.3 -0.33
98 AT4G03740 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.51 0.33 -0.32
99 AT5G47530 Auxin-responsive family protein 0.5 0.33 -0.31
100 AT1G52500 MUTM homolog-1 A. THALIANA
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
ATMMH-2, FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 1,
FORMAMIDOPYRIMIDINE-DNA
GLYCOSYLASE 2, MUTM homolog-1,
MMH-2		 0.5 0.32 -0.32
101 AT4G28010 Tetratricopeptide repeat (TPR)-like superfamily protein 0.5 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0093 Galactinol dihydrate - Galactinol galactosylcyclitol biosynthesis,
stachyose biosynthesis,
ajugose biosynthesis I (galactinol-dependent) 		0.8 0.44 -0.45 C0093
103 C0207 Phosphatidylglycerol-34:5 - - - -0.62 0.46 -0.45