AT5G04490 : vitamin E pathway gene 5
Query Information
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AGICode AT5G04490
Description vitamin E pathway gene 5
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G04490 vitamin E pathway gene 5 vitamin E pathway gene 5 1 0.32 -0.32
2 AT1G66130 NAD(P)-binding Rossmann-fold superfamily protein 0.89 0.33 -0.33
3 AT2G14120 dynamin related protein dynamin related protein -0.84 0.33 -0.33
4 AT4G27800 thylakoid-associated phosphatase 38 PROTEIN PHOSPHATASE 1,
thylakoid-associated phosphatase
38		 0.83 0.31 -0.33
5 AT5G23060 calcium sensing receptor calcium sensing receptor 0.83 0.3 -0.29
6 AT3G25905 CLAVATA3/ESR-RELATED 27 CLAVATA3/ESR-RELATED 27 0.83 0.32 -0.31
7 AT3G18860 transducin family protein / WD-40 repeat family protein -0.81 0.32 -0.32
8 AT3G32930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.81 0.32 -0.32
9 AT5G16940 carbon-sulfur lyases 0.8 0.32 -0.32
10 AT3G42725 Putative membrane lipoprotein 0.8 0.33 -0.33
11 AT2G42690 alpha/beta-Hydrolases superfamily protein 0.8 0.31 -0.31
12 AT3G47730 ATP-binding cassette A2 ATP-binding cassette A2, A.
THALIANA ABC2 HOMOLOG 1, ABC2
homolog 1		 -0.79 0.29 -0.34
13 AT4G39270 Leucine-rich repeat protein kinase family protein -0.79 0.33 -0.32
14 AT3G59060 phytochrome interacting factor 3-like 6 PHYTOCHROME-INTERACTING FACTOR 5,
phytochrome interacting factor
3-like 6		 0.79 0.33 -0.31
15 AT5G38980 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.79 0.33 -0.31
16 AT4G23890 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287
proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa
- 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes
- 111 (source: NCBI BLink).		 CHLORORESPIRATORY REDUCTION 31,
NADH dehydrogenase-like complex S		 0.79 0.31 -0.34
17 AT5G03050 unknown protein; Has 33 Blast hits to 33 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.78 0.32 -0.3
18 AT2G47000 ATP binding cassette subfamily B4 ATP-binding cassette B4,
ARABIDOPSIS P-GLYCOPROTEIN 4,
MULTIDRUG RESISTANCE 4,
P-GLYCOPROTEIN 4		 -0.77 0.3 -0.34
19 AT5G60840 unknown protein; Has 361 Blast hits to 333 proteins in 92
species: Archae - 2; Bacteria - 55; Metazoa - 145; Fungi -
36; Plants - 42; Viruses - 19; Other Eukaryotes - 62
(source: NCBI BLink).		 0.77 0.31 -0.33
20 AT2G04570 GDSL-like Lipase/Acylhydrolase superfamily protein 0.77 0.33 -0.33
21 AT5G50760 SAUR-like auxin-responsive protein family -0.77 0.32 -0.3
22 AT1G07510 FTSH protease 10 FTSH protease 10 -0.76 0.3 -0.32
23 AT4G12240 zinc finger (C2H2 type) family protein -0.76 0.31 -0.31
24 AT3G53310 AP2/B3-like transcriptional factor family protein 0.76 0.29 -0.31
25 AT3G18070 beta glucosidase 43 beta glucosidase 43 0.76 0.32 -0.31
26 AT1G73530 RNA-binding (RRM/RBD/RNP motifs) family protein 0.76 0.3 -0.32
27 AT1G74710 ADC synthase superfamily protein ARABIDOPSIS ISOCHORISMATE SYNTHASE
1, ENHANCED DISEASE SUSCEPTIBILITY
TO ERYSIPHE ORONTII 16,
ISOCHORISMATE SYNTHASE 1,
SALICYLIC ACID INDUCTION DEFICIENT
2		 0.76 0.32 -0.3
28 AT5G44400 FAD-binding Berberine family protein 0.76 0.31 -0.33
29 AT3G52200 Dihydrolipoamide acetyltransferase, long form protein LTA3 -0.76 0.3 -0.31
30 AT5G18210 NAD(P)-binding Rossmann-fold superfamily protein 0.76 0.31 -0.3
31 AT1G17140 interactor of constitutive active rops 1 interactor of constitutive active
rops 1, ROP INTERACTIVE PARTNER 1		 0.75 0.31 -0.33
32 AT3G16520 UDP-glucosyl transferase 88A1 UDP-glucosyl transferase 88A1 0.75 0.32 -0.33
33 AT4G37550 Acetamidase/Formamidase family protein 0.75 0.32 -0.35
34 AT2G38540 lipid transfer protein 1 ARABIDOPSIS THALIANA LIPID
TRANSFER PROTEIN 1, lipid transfer
protein 1, LIPID TRANSFER PROTEIN
1		 0.75 0.31 -0.32
35 AT1G55500 evolutionarily conserved C-terminal region 4 evolutionarily conserved
C-terminal region 4		 -0.75 0.3 -0.3
36 AT3G03050 cellulose synthase-like D3 CELLULOSE SYNTHASE LIKE D3,
cellulose synthase-like D3, KOJAK,
ROOT HAIR DEFECTIVE 7		 -0.75 0.34 -0.31
37 AT5G24930 CONSTANS-like 4 ATCOL4, CONSTANS-like 4 0.75 0.31 -0.3
38 AT3G56400 WRKY DNA-binding protein 70 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 70, WRKY
DNA-binding protein 70		 0.75 0.32 -0.32
39 AT1G03400 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.75 0.3 -0.33
40 AT5G43130 TBP-associated factor 4 TBP-associated factor 4,
TBP-associated factor 4B		 -0.75 0.32 -0.32
41 AT2G46520 cellular apoptosis susceptibility protein, putative /
importin-alpha re-exporter, putative		 -0.74 0.3 -0.31
42 AT3G22104 Phototropic-responsive NPH3 family protein 0.74 0.31 -0.32
43 AT1G44170 aldehyde dehydrogenase 3H1 aldehyde dehydrogenase 3H1,
aldehyde dehydrogenase 4		 -0.74 0.3 -0.32
44 AT5G07800 Flavin-binding monooxygenase family protein 0.74 0.32 -0.34
45 AT1G18840 IQ-domain 30 IQ-domain 30 0.74 0.32 -0.32
46 AT5G57345 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.74 0.31 -0.34
47 AT1G68260 Thioesterase superfamily protein 0.74 0.32 -0.32
48 AT1G17180 glutathione S-transferase TAU 25 glutathione S-transferase TAU 25,
glutathione S-transferase TAU 25		 -0.73 0.32 -0.3
49 AT2G28410 unknown protein; Has 18 Blast hits to 18 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.73 0.32 -0.34
50 AT1G69390 homologue of bacterial MinE 1 accumulation and replication of
chloroplasts 12, homologue of
bacterial MinE 1, homologue of
bacterial MinE 1		 0.73 0.31 -0.3
51 AT5G12900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G12330.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.73 0.3 -0.3
52 AT1G06890 nodulin MtN21 /EamA-like transporter family protein -0.73 0.31 -0.34
53 AT1G51500 ABC-2 type transporter family protein ATP-binding cassette G12,
AtABCG12, ARABIDOPSIS THALIANA
WHITE-BROWN COMPLEX 12, ECERIFERUM
5, D3, WHITE-BROWN COMPLEX 12		 0.73 0.32 -0.32
54 AT1G08030 tyrosylprotein sulfotransferase active quiescent center1,
tyrosylprotein sulfotransferase		 -0.73 0.34 -0.33
55 AT4G16060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 42
Blast hits to 42 proteins in 16 species: Archae - 0;
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 7 (source: NCBI BLink).		 0.73 0.33 -0.34
56 AT1G31580 ECS1 CXC750, ECS1 0.73 0.33 -0.33
57 AT4G15270 glucosyltransferase-related -0.73 0.34 -0.31
58 AT4G08180 OSBP(oxysterol binding protein)-related protein 1C OSBP(oxysterol binding
protein)-related protein 1C		 -0.73 0.31 -0.31
59 AT4G26070 MAP kinase/ ERK kinase 1 ATMEK1, MAP kinase/ ERK kinase 1,
MITOGEN ACTIVATED PROTEIN KINASE
KINASE 1, NMAPKK		 0.73 0.32 -0.31
60 AT3G05360 receptor like protein 30 receptor like protein 30, receptor
like protein 30		 -0.73 0.32 -0.33
61 AT2G43780 unknown protein; Has 30 Blast hits to 30 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.73 0.32 -0.31
62 AT1G64550 general control non-repressible 3 ATP-binding cassette F3, AtABCF3,
AtGCN20, general control
non-repressible 3, general control
non-repressible 20, general
control non-repressible 3,
susceptible to
coronatine-deficient Pst DC3000 5		 -0.72 0.33 -0.34
63 AT2G16950 transportin 1 TRANSPORTIN 1, transportin 1 -0.71 0.31 -0.33
64 AT1G79410 organic cation/carnitine transporter5 organic cation/carnitine
transporter5, organic
cation/carnitine transporter5		 -0.71 0.31 -0.34
65 ATMG00690 hypothetical protein ORF240A -0.71 0.3 -0.33
66 AT5G63905 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 12 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.71 0.32 -0.32
67 AT3G22980 Ribosomal protein S5/Elongation factor G/III/V family
protein		 -0.7 0.31 -0.36
68 AT2G39110 Protein kinase superfamily protein -0.7 0.31 -0.31
69 AT3G11450 DnaJ domain ;Myb-like DNA-binding domain -0.7 0.32 -0.31
70 AT1G56145 Leucine-rich repeat transmembrane protein kinase -0.7 0.32 -0.3
71 AT5G63930 Leucine-rich repeat protein kinase family protein -0.7 0.33 -0.33
72 AT2G03120 signal peptide peptidase signal peptide peptidase, signal
peptide peptidase		 -0.7 0.33 -0.32
73 AT2G19110 heavy metal atpase 4 ARABIDOPSIS HEAVY METAL ATPASE 4,
heavy metal atpase 4		 -0.7 0.31 -0.3
74 AT3G25585 aminoalcoholphosphotransferase aminoalcoholphosphotransferase,
ATAAPT2		 -0.69 0.31 -0.32
75 AT5G18950 Tetratricopeptide repeat (TPR)-like superfamily protein -0.69 0.29 -0.33
76 AT5G26860 lon protease 1 lon protease 1, LON_ARA_ARA -0.69 0.34 -0.31
77 AT4G35890 winged-helix DNA-binding transcription factor family
protein		 -0.69 0.32 -0.31
78 AT2G41850 polygalacturonase abscission zone A. thaliana ARABIDOPSIS DEHISCENCE ZONE
POLYGALACTURONASE 2,
polygalacturonase abscission zone
A. thaliana		 -0.69 0.31 -0.3
79 AT3G11150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.32 -0.33
80 AT1G66580 senescence associated gene 24 ribosomal protein L10 C,
senescence associated gene 24		 -0.68 0.34 -0.33
81 AT1G78340 glutathione S-transferase TAU 22 glutathione S-transferase TAU 22,
glutathione S-transferase TAU 22		 -0.68 0.3 -0.32
82 AT4G37910 mitochondrial heat shock protein 70-1 mitochondrial heat shock protein
70-1		 -0.68 0.31 -0.32
83 AT2G16485 nucleic acid binding;zinc ion binding;DNA binding -0.68 0.35 -0.32
84 AT3G06720 importin alpha isoform 1 IMPORTIN ALPHA, AT-IMP, ATKAP
ALPHA, importin alpha isoform 1,
IMPORTIN ALPHA ISOFORM 1		 -0.68 0.32 -0.3
85 AT5G45140 nuclear RNA polymerase C2 nuclear RNA polymerase C2 -0.67 0.33 -0.3
86 AT3G54100 O-fucosyltransferase family protein -0.67 0.33 -0.31
87 AT1G79450 ALA-interacting subunit 5 ALA-interacting subunit 5 -0.67 0.31 -0.33
88 AT1G77280 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.66 0.32 -0.32
89 AT3G46170 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.33 -0.34
90 AT1G16970 KU70 homolog ARABIDOPSIS THALIANA KU70 HOMOLOG,
KU70 homolog		 -0.66 0.3 -0.31
91 AT1G10390 Nucleoporin autopeptidase -0.66 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0183 MST_3033.1 - - - 0.85 0.45 -0.45
93 C0067 Citramalic acid (S)-(+)-, (R)-(-)-Citramalate (S)-Citramalate; (R)-Citramalate - -0.82 0.4 -0.44 C0067
94 C0263 UMP - UMP pyrimidine salvage pathway,
dolichyl-diphosphooligosaccharide biosynthesis,
lipid IVA biosynthesis,
uridine-5'-phosphate biosynthesis,
pyrimidine ribonucleotides interconversion 		0.75 0.43 -0.46 C0263