AT5G04430 : BINDING TO TOMV RNA 1
Query Information
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AGICode AT5G04430
Description binding to TOMV RNA 1L (long form)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G04430 binding to TOMV RNA 1L (long form) BINDING TO TOMV RNA 1, binding to
TOMV RNA 1L (long form), BINDING
TO TOMV RNA 1S (SHORT FORM)		 1 0.32 -0.3
2 AT3G04840 Ribosomal protein S3Ae 0.88 0.32 -0.31
3 AT3G06680 Ribosomal L29e protein family 0.88 0.34 -0.3
4 AT5G61170 Ribosomal protein S19e family protein 0.88 0.32 -0.32
5 AT4G31700 ribosomal protein S6 ribosomal protein S6, RPS6A 0.87 0.3 -0.3
6 AT3G58610 ketol-acid reductoisomerase 0.86 0.32 -0.34
7 AT2G45180 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.86 0.31 -0.32
8 AT3G10520 haemoglobin 2 haemoglobin 2, ARATH GLB2,
ARABIDOPSIS HEMOGLOBIN 2,
HEMOGLOBIN 2, haemoglobin 2,
NON-SYMBIOTIC HAEMOGLOBIN 2		 0.85 0.33 -0.34
9 AT1G67430 Ribosomal protein L22p/L17e family protein 0.85 0.32 -0.32
10 AT4G10480 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.85 0.32 -0.32
11 AT2G20450 Ribosomal protein L14 0.85 0.31 -0.33
12 AT4G25740 RNA binding Plectin/S10 domain-containing protein 0.85 0.3 -0.31
13 AT2G36620 ribosomal protein L24 ribosomal protein L24 0.85 0.34 -0.31
14 AT3G15850 fatty acid desaturase 5 ADS3, fatty acid desaturase 5,
FATTY ACID DESATURASE B, JB67		 0.84 0.34 -0.31
15 AT5G44130 FASCICLIN-like arabinogalactan protein 13 precursor FASCICLIN-like arabinogalactan
protein 13 precursor		 0.84 0.3 -0.31
16 AT5G47700 60S acidic ribosomal protein family 0.84 0.33 -0.3
17 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.84 0.29 -0.32
18 AT4G15000 Ribosomal L27e protein family 0.84 0.31 -0.33
19 AT3G11510 Ribosomal protein S11 family protein 0.84 0.34 -0.32
20 AT3G10610 Ribosomal S17 family protein 0.84 0.31 -0.3
21 AT4G00100 ribosomal protein S13A ribosomal protein S13A, POINTED
FIRST LEAF 2, RPS13, ribosomal
protein S13A		 0.84 0.3 -0.35
22 AT3G59980 Nucleic acid-binding, OB-fold-like protein 0.84 0.34 -0.31
23 AT3G62120 Class II aaRS and biotin synthetases superfamily protein 0.84 0.32 -0.31
24 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 0.84 0.35 -0.34
25 AT3G09200 Ribosomal protein L10 family protein 0.84 0.31 -0.32
26 AT1G33810 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 39 Blast hits to 39 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.84 0.32 -0.3
27 AT3G53020 Ribosomal protein L24e family protein RIBOSOMAL PROTEIN L24, RPL24B,
SHORT VALVE1		 0.84 0.32 -0.29
28 AT5G11160 adenine phosphoribosyltransferase 5 adenine phosphoribosyltransferase
5		 0.84 0.33 -0.3
29 AT3G13740 Ribonuclease III family protein 0.84 0.31 -0.32
30 AT5G61130 plasmodesmata callose-binding protein 1 plasmodesmata callose-binding
protein 1		 0.83 0.32 -0.34
31 AT1G24360 NAD(P)-binding Rossmann-fold superfamily protein 0.83 0.32 -0.35
32 AT4G14960 Tubulin/FtsZ family protein TUA6 0.83 0.32 -0.31
33 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 0.83 0.31 -0.31
34 AT2G18290 anaphase promoting complex 10 anaphase promoting complex 10,
EMBRYO DEFECTIVE 2783		 0.83 0.32 -0.31
35 AT3G43810 calmodulin 7 calmodulin 7 0.83 0.32 -0.33
36 AT3G11420 Protein of unknown function (DUF604) -0.83 0.31 -0.31
37 AT2G42580 tetratricopetide-repeat thioredoxin-like 3 tetratricopetide-repeat
thioredoxin-like 3,
VHI-INTERACTING TPR CONTAINING
PROTEIN		 0.82 0.31 -0.31
38 AT3G52940 Ergosterol biosynthesis ERG4/ERG24 family EXTRA-LONG-LIFESPAN 1, FACKEL,
HYD2		 0.82 0.31 -0.32
39 AT1G52670 Single hybrid motif superfamily protein 0.82 0.32 -0.31
40 AT3G53890 Ribosomal protein S21e 0.82 0.34 -0.31
41 AT2G43130 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ARA-4, ARA4, ATRAB11F, ARABIDOPSIS
RAB GTPASE HOMOLOG A5C, RABA5C		 0.82 0.32 -0.3
42 AT3G20250 pumilio 5 pumilio 5, pumilio 5 -0.82 0.32 -0.32
43 AT1G14320 Ribosomal protein L16p/L10e family protein ribosomal protein L10, ribosomal
protein L10 A, SUPPRESSOR OF
ACAULIS 52		 0.82 0.31 -0.3
44 AT3G27080 translocase of outer membrane 20 kDa subunit 3 translocase of outer membrane 20
kDa subunit 3		 0.82 0.33 -0.29
45 AT2G02740 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 3, PLASTID
TRANSCRIPTIONALLY ACTIVE11, WHIRLY
3		 0.82 0.33 -0.29
46 AT5G51960 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein
(InterPro:IPR008011); Has 45 Blast hits to 45 proteins in
14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.82 0.3 -0.33
47 AT3G48930 Nucleic acid-binding, OB-fold-like protein embryo defective 1080 0.82 0.32 -0.29
48 AT1G23290 Ribosomal protein L18e/L15 superfamily protein RIBOSOMAL PROTEIN L27A, RPL27AB 0.82 0.34 -0.33
49 AT5G04160 Nucleotide-sugar transporter family protein 0.82 0.32 -0.32
50 AT5G52650 RNA binding Plectin/S10 domain-containing protein 0.82 0.32 -0.31
51 AT1G16790 ribosomal protein-related 0.82 0.32 -0.33
52 AT3G01100 hypothetical protein 1 ARABIDOPSIS THALIANA HYPOTHETICAL
PROTEIN 1, hypothetical protein 1		 -0.82 0.31 -0.32
53 AT1G47200 WPP domain protein 2 WPP domain protein 2 0.82 0.31 -0.31
54 AT1G43710 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 embryo defective 1075 0.82 0.31 -0.32
55 AT2G10940 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.82 0.3 -0.32
56 AT1G66940 protein kinase-related 0.82 0.31 -0.32
57 AT1G12500 Nucleotide-sugar transporter family protein 0.82 0.3 -0.32
58 AT2G26580 plant-specific transcription factor YABBY family protein YABBY5 0.81 0.31 -0.33
59 AT5G41970 Metal-dependent protein hydrolase 0.81 0.33 -0.31
60 AT2G27710 60S acidic ribosomal protein family 0.81 0.32 -0.3
61 AT5G59220 highly ABA-induced PP2C gene 1 highly ABA-induced PP2C gene 1,
senescence associated gene 113		 -0.81 0.29 -0.32
62 AT1G48610 AT hook motif-containing protein 0.81 0.33 -0.31
63 AT2G18910 hydroxyproline-rich glycoprotein family protein 0.81 0.34 -0.33
64 AT3G53430 Ribosomal protein L11 family protein 0.81 0.31 -0.33
65 AT3G18780 actin 2 actin 2, DEFORMED ROOT HAIRS 1,
ENHANCER OF LRX1 2, FRIZZY AND
KINKED SHOOTS 2, LIGHT
STRESS-REGULATED 2		 0.81 0.3 -0.32
66 AT2G27720 60S acidic ribosomal protein family 0.81 0.31 -0.32
67 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.81 0.31 -0.31
68 AT1G15140 FAD/NAD(P)-binding oxidoreductase 0.81 0.32 -0.32
69 AT5G02880 ubiquitin-protein ligase 4 ubiquitin-protein ligase 4 -0.81 0.32 -0.31
70 AT4G26840 small ubiquitin-like modifier 1 ARABIDOPSIS THALIANA SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, SMALL
UBIQUITIN-LIKE MODIFIER 1, small
ubiquitin-like modifier 1		 0.81 0.3 -0.34
71 AT2G43710 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 FATTY ACID BIOSYNTHESIS 2,
suppressor of SA insensitive 2		 0.81 0.3 -0.3
72 AT1G22930 T-complex protein 11 -0.81 0.32 -0.32
73 AT1G04170 eukaryotic translation initiation factor 2 gamma subunit eukaryotic translation initiation
factor 2 gamma subunit		 0.81 0.31 -0.3
74 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN		 0.8 0.31 -0.32
75 AT2G20140 AAA-type ATPase family protein regulatory particle AAA-ATPase 2b 0.8 0.32 -0.31
76 AT2G31170 Cysteinyl-tRNA synthetase, class Ia family protein FIONA, cysteinyl t-RNA synthetase 0.8 0.33 -0.31
77 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 0.8 0.32 -0.32
78 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.8 0.3 -0.33
79 AT5G51460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 ATTPPA 0.8 0.31 -0.3
80 AT3G23710 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-III,
translocon at the inner envelope
membrane of chloroplasts 22-III		 0.8 0.32 -0.31
81 AT2G03350 Protein of unknown function, DUF538 0.8 0.31 -0.32
82 AT2G38800 Plant calmodulin-binding protein-related -0.8 0.34 -0.32
83 AT3G18740 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein receptor-like kinase 902 0.8 0.3 -0.34
84 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.78 0.32 -0.31
85 AT1G54100 aldehyde dehydrogenase 7B4 aldehyde dehydrogenase 7B4 -0.78 0.33 -0.31
86 AT4G28490 Leucine-rich receptor-like protein kinase family protein HAESA, RECEPTOR-LIKE PROTEIN
KINASE 5		 -0.78 0.3 -0.33
87 AT4G28570 Long-chain fatty alcohol dehydrogenase family protein -0.78 0.32 -0.3
88 AT5G16680 RING/FYVE/PHD zinc finger superfamily protein -0.78 0.31 -0.33
89 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.77 0.33 -0.29
90 AT4G02360 Protein of unknown function, DUF538 -0.77 0.29 -0.33
91 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 -0.77 0.32 -0.31
92 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 -0.77 0.32 -0.33
93 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.76 0.32 -0.31
94 AT1G20880 RNA-binding (RRM/RBD/RNP motifs) family protein -0.76 0.32 -0.31
95 AT1G67300 Major facilitator superfamily protein -0.76 0.32 -0.29
96 AT3G16940 calmodulin binding;transcription regulators -0.75 0.32 -0.3
97 AT1G69480 EXS (ERD1/XPR1/SYG1) family protein -0.75 0.31 -0.32
98 AT1G32740 SBP (S-ribonuclease binding protein) family protein -0.75 0.32 -0.3
99 AT5G28510 beta glucosidase 24 beta glucosidase 24 -0.75 0.32 -0.32
100 AT1G79610 Na+/H+ antiporter 6 ARABIDOPSIS NA+/H+ ANTIPORTER 6,
Na+/H+ antiporter 6		 -0.75 0.34 -0.31
101 AT3G62590 alpha/beta-Hydrolases superfamily protein -0.75 0.34 -0.31
102 AT1G71080 RNA polymerase II transcription elongation factor -0.75 0.32 -0.3
103 AT4G27410 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 Arabidopsis NAC domain containing
protein 72, RESPONSIVE TO
DESICCATION 26		 -0.75 0.32 -0.3
104 AT1G07040 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in
187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi
- 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140
(source: NCBI BLink).		 -0.75 0.31 -0.31
105 AT4G02280 sucrose synthase 3 ATSUS3, sucrose synthase 3 -0.74 0.3 -0.34
106 AT3G27610 Nucleotidylyl transferase superfamily protein -0.74 0.3 -0.33
107 AT5G50780 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
family protein		 -0.74 0.3 -0.33
108 AT1G29400 MEI2-like protein 5 MEI2-like protein 5, MEI2-like
protein 5		 -0.74 0.31 -0.3
109 AT5G07330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.74 0.32 -0.3
110 AT3G48020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.33 -0.32
111 AT3G29575 ABI five binding protein 3 ABI five binding protein 3 -0.74 0.32 -0.32
112 AT2G22010 related to KPC1 related to KPC1 -0.73 0.29 -0.32
113 AT2G25940 alpha-vacuolar processing enzyme alpha-vacuolar processing enzyme,
ALPHAVPE		 -0.73 0.31 -0.31
114 AT1G27150 Tetratricopeptide repeat (TPR)-like superfamily protein -0.72 0.31 -0.31
115 AT2G46270 G-box binding factor 3 G-box binding factor 3 -0.72 0.3 -0.31
116 AT1G63720 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT5G52430.1); Has 490 Blast hits to 394 proteins in
96 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi
- 88; Plants - 175; Viruses - 14; Other Eukaryotes - 79
(source: NCBI BLink).		 -0.72 0.3 -0.31
117 AT4G26080 Protein phosphatase 2C family protein ABA INSENSITIVE 1, AtABI1 -0.71 0.32 -0.31
118 AT3G60140 Glycosyl hydrolase superfamily protein BETA GLUCOSIDASE 30, DARK
INDUCIBLE 2, SENESCENCE-RELATED
GENE 2		 -0.71 0.34 -0.32
119 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.71 0.34 -0.32
120 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.71 0.31 -0.3
121 AT2G04350 AMP-dependent synthetase and ligase family protein long-chain acyl-CoA synthetase 8 -0.71 0.3 -0.31
122 AT1G69360 Plant protein of unknown function (DUF863) -0.71 0.34 -0.3
123 AT5G53120 spermidine synthase 3 SPERMIDINE SYNTHASE 3, spermidine
synthase 3, SPMS		 -0.71 0.32 -0.3
124 AT1G32750 HAC13 protein (HAC13) GTD1, HISTONE ACETYLTRANSFERASE OF
THE CBP FAMILY 13, HAF01, HISTONE
ACETYLTRANSFERASE OF THE TAFII250
FAMILY 1, TBP-ASSOCIATED FACTOR 1		 -0.7 0.29 -0.32
125 AT3G14270 phosphatidylinositol-4-phosphate 5-kinase family protein FORMS APLOID AND BINUCLEATE CELLS
1B		 -0.69 0.33 -0.32