AT5G04600 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT5G04600
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.32 -0.3
2 AT1G52930 Ribosomal RNA processing Brix domain protein 0.85 0.31 -0.32
3 AT1G25260 Ribosomal protein L10 family protein 0.84 0.33 -0.33
4 AT5G08180 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.82 0.33 -0.33
5 AT4G34670 Ribosomal protein S3Ae 0.82 0.32 -0.33
6 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.82 0.33 -0.3
7 AT5G06360 Ribosomal protein S8e family protein 0.81 0.32 -0.32
8 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.81 0.33 -0.3
9 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.81 0.34 -0.31
10 AT5G12410 THUMP domain-containing protein 0.8 0.31 -0.31
11 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.8 0.29 -0.31
12 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.8 0.33 -0.31
13 AT4G23620 Ribosomal protein L25/Gln-tRNA synthetase,
anti-codon-binding domain		 0.8 0.32 -0.31
14 AT1G72730 DEA(D/H)-box RNA helicase family protein 0.8 0.31 -0.32
15 AT3G12860 NOP56-like pre RNA processing ribonucleoprotein 0.8 0.33 -0.3
16 AT3G14600 Ribosomal protein L18ae/LX family protein 0.79 0.33 -0.31
17 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.79 0.31 -0.32
18 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.79 0.32 -0.31
19 AT4G30930 Ribosomal protein L21 NUCLEAR FUSION DEFECTIVE 1 0.79 0.33 -0.34
20 AT5G14520 pescadillo-related 0.79 0.29 -0.33
21 AT3G03920 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.79 0.31 -0.33
22 AT5G62440 Protein of unknown function (DUF3223) 0.78 0.3 -0.29
23 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.77 0.33 -0.32
24 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.3 -0.31
25 AT1G17360 BEST Arabidopsis thaliana protein match is:
COP1-interacting protein-related (TAIR:AT1G72410.1); Has
9949 Blast hits to 7480 proteins in 576 species: Archae -
12; Bacteria - 1007; Metazoa - 3636; Fungi - 982; Plants -
444; Viruses - 50; Other Eukaryotes - 3818 (source: NCBI
BLink).		 -0.76 0.34 -0.3
26 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.76 0.32 -0.31
27 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.76 0.31 -0.32
28 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.33 -0.31
29 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.76 0.31 -0.33
30 AT5G40200 DegP protease 9 DegP protease 9 0.76 0.3 -0.31
31 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 0.76 0.31 -0.33
32 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.75 0.35 -0.31
33 AT3G57360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits
to 122 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.75 0.3 -0.29
34 AT1G60770 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.33 -0.34
35 AT5G16930 AAA-type ATPase family protein 0.75 0.31 -0.31
36 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A		 0.75 0.33 -0.3
37 AT4G31120 SHK1 binding protein 1 ATPRMT5, PROTEIN ARGININE
METHYLTRANSFERASE 5, SHK1 binding
protein 1		 0.75 0.33 -0.32
38 AT5G48850 Tetratricopeptide repeat (TPR)-like superfamily protein SULPHUR DEFICIENCY-INDUCED 1 -0.75 0.33 -0.32
39 AT3G03060 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.3 -0.3
40 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.3 -0.33
41 AT1G19650 Sec14p-like phosphatidylinositol transfer family protein -0.74 0.31 -0.31
42 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.74 0.32 -0.3
43 AT3G07590 Small nuclear ribonucleoprotein family protein 0.74 0.33 -0.32
44 AT2G30050 transducin family protein / WD-40 repeat family protein 0.73 0.29 -0.31
45 AT3G18940 clast3-related 0.73 0.33 -0.32
46 AT1G61990 Mitochondrial transcription termination factor family
protein		 0.73 0.31 -0.32
47 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 -0.73 0.31 -0.3
48 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 0.72 0.33 -0.32
49 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 0.72 0.33 -0.33
50 AT2G15630 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.31 -0.32
51 AT1G18450 actin-related protein 4 actin-related protein 4,
actin-related protein 4		 0.72 0.29 -0.31
52 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.72 0.31 -0.31
53 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.71 0.33 -0.32
54 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.3 -0.31
55 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 0.71 0.3 -0.3
56 AT2G36930 zinc finger (C2H2 type) family protein 0.71 0.32 -0.3
57 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.71 0.3 -0.29
58 AT4G37090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.71 0.31 -0.31
59 AT1G78150 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G35780.1); Has 152 Blast hits
to 146 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 2; Plants - 149; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.32 -0.31
60 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.7 0.31 -0.32
61 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.69 0.32 -0.3
62 AT4G37270 heavy metal atpase 1 ARABIDOPSIS THALIANA HEAVY METAL
ATPASE 1, heavy metal atpase 1		 -0.68 0.31 -0.3
63 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.68 0.3 -0.29
64 AT3G02500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits
to 49 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.32 -0.29
65 AT1G28320 protease-related DEG15 -0.67 0.33 -0.3
66 AT2G21340 MATE efflux family protein -0.67 0.3 -0.34
67 AT1G72650 TRF-like 6 TRF-like 6 -0.67 0.32 -0.33
68 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.66 0.32 -0.33
69 AT4G24740 FUS3-complementing gene 2 FUS3-complementing gene 2, AME1,
FUS3-complementing gene 2		 -0.66 0.31 -0.3
70 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.66 0.31 -0.33
71 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.66 0.31 -0.32
72 AT1G19835 Plant protein of unknown function (DUF869) -0.66 0.3 -0.33
73 AT1G16730 unknown protein 6 unknown protein 6 -0.66 0.33 -0.32
74 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 -0.66 0.31 -0.31
75 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.65 0.31 -0.31
76 AT2G23430 Cyclin-dependent kinase inhibitor family protein ICK1, KIP-RELATED PROTEIN 1 -0.65 0.34 -0.34
77 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.65 0.31 -0.3
78 AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase pyridoxin (pyrodoxamine)
5'-phosphate oxidase, HOMOLOG OF
YEAST PYRIDOXINE AUXOTROPHY 3,
pyridoxin (pyrodoxamine)
5'-phosphate oxidase		 -0.65 0.32 -0.31
79 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.33 -0.31
80 AT5G26190 Cysteine/Histidine-rich C1 domain family protein -0.65 0.29 -0.32
81 AT3G01180 starch synthase 2 starch synthase 2, starch synthase
2		 -0.65 0.34 -0.33
82 AT1G30160 Protein of unknown function (DUF295) -0.64 0.32 -0.32
83 AT1G05030 Major facilitator superfamily protein -0.64 0.32 -0.32
84 AT1G30810 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 -0.64 0.29 -0.3
85 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.64 0.3 -0.3
86 AT5G51290 Diacylglycerol kinase family protein -0.63 0.29 -0.3
87 AT3G08850 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1B, RAPTOR1, RAPTOR1B -0.63 0.31 -0.3
88 AT4G09340 SPla/RYanodine receptor (SPRY) domain-containing protein -0.63 0.31 -0.3
89 AT5G13880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G47920.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.33 -0.32
90 AT2G15530 RING/U-box superfamily protein -0.62 0.3 -0.32
91 AT5G24655 response to low sulfur 4 RESPONSE TO LOW SULFUR 4 -0.62 0.29 -0.32
92 AT1G60270 beta glucosidase 6 beta glucosidase 6 -0.62 0.31 -0.31
93 AT2G04230 FBD, F-box and Leucine Rich Repeat domains containing
protein		 -0.61 0.32 -0.31
94 AT1G59520 CW7 CW7 -0.61 0.33 -0.34
95 AT1G05790 lipase class 3 family protein -0.6 0.31 -0.3
96 AT4G39190 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21560.1); Has 5536 Blast hits
to 3562 proteins in 401 species: Archae - 12; Bacteria -
497; Metazoa - 1363; Fungi - 374; Plants - 149; Viruses -
22; Other Eukaryotes - 3119 (source: NCBI BLink).		 -0.6 0.3 -0.3
97 AT2G39435 Phosphatidylinositol N-acetyglucosaminlytransferase subunit
P-related		 -0.59 0.32 -0.33
98 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 -0.59 0.31 -0.3
99 AT4G26950 Protein of unknown function, DUF584 -0.59 0.3 -0.31
100 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.59 0.33 -0.33
101 AT4G31280 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.33 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0118 Hyperoside - Quercetin-3-glucoside quercetin glucoside biosynthesis (Arabidopsis),
rutin biosynthesis 		0.74 0.43 -0.44 C0118