AT5G03860 : malate synthase
Query Information
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AGICode AT5G03860
Description malate synthase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G03860 malate synthase malate synthase 1 0.32 -0.32
2 AT3G21720 isocitrate lyase isocitrate lyase 0.84 0.28 -0.31
3 AT5G59560 sensitivity to red light reduced protein (SRR1) SENSITIVITY TO RED LIGHT REDUCED 1 0.72 0.32 -0.32
4 AT1G67840 chloroplast sensor kinase chloroplast sensor kinase -0.71 0.28 -0.33
5 AT4G37870 phosphoenolpyruvate carboxykinase 1 phosphoenolpyruvate carboxykinase
1, PHOSPHOENOLPYRUVATE
CARBOXYKINASE		 0.7 0.32 -0.3
6 AT5G11090 serine-rich protein-related 0.7 0.33 -0.31
7 AT5G60880 breaking of asymmetry in the stomatal lineage BREAKING OF ASYMMETRY IN THE
STOMATAL LINEAGE		 -0.69 0.33 -0.3
8 AT2G46950 cytochrome P450, family 709, subfamily B, polypeptide 2 cytochrome P450, family 709,
subfamily B, polypeptide 2		 0.69 0.3 -0.3
9 AT3G57230 AGAMOUS-like 16 AGAMOUS-like 16 -0.68 0.31 -0.33
10 AT5G65110 acyl-CoA oxidase 2 acyl-CoA oxidase 2, ATACX2 0.68 0.34 -0.32
11 AT2G38460 iron regulated 1 ARABIDOPSIS THALIANA
IRON-REGULATED PROTEIN 1,
FERROPORTIN 1, iron regulated 1		 -0.68 0.31 -0.32
12 AT2G29630 thiaminC PYRIMIDINE REQUIRING, thiaminC -0.68 0.31 -0.31
13 AT1G61820 beta glucosidase 46 beta glucosidase 46 0.67 0.31 -0.29
14 AT5G16540 zinc finger nuclease 3 zinc finger nuclease 3 -0.67 0.32 -0.32
15 AT1G12750 RHOMBOID-like protein 6 RHOMBOID-like protein 6,
RHOMBOID-like protein 6		 -0.67 0.33 -0.31
16 AT4G08310 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone chaperone domain CHZ (InterPro:IPR019098); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins
in 1618 species: Archae - 142; Bacteria - 4400; Metazoa -
24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other
Eukaryotes - 15245 (source: NCBI BLink).		 -0.66 0.3 -0.3
17 AT1G76620 Protein of unknown function, DUF547 -0.66 0.32 -0.32
18 AT5G60760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.65 0.33 -0.34
19 AT4G37820 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G22795.1); Has 433572 Blast
hits to 177005 proteins in 4263 species: Archae - 2016;
Bacteria - 67591; Metazoa - 157995; Fungi - 49745; Plants -
22011; Viruses - 2192; Other Eukaryotes - 132022 (source:
NCBI BLink).		 -0.65 0.3 -0.31
20 AT3G01550 phosphoenolpyruvate (pep)/phosphate translocator 2 PHOSPHOENOLPYRUVATE
(PEP)/PHOSPHATE TRANSLOCATOR 2,
phosphoenolpyruvate
(pep)/phosphate translocator 2		 -0.64 0.32 -0.33
21 AT2G43860 Pectin lyase-like superfamily protein 0.64 0.31 -0.32
22 AT5G47820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 FRAGILE FIBER 1 -0.64 0.34 -0.32
23 AT5G01940 eukaryotic translation initiation factor 2B family protein
/ eIF-2B family protein		 0.64 0.3 -0.31
24 AT2G32160 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.31 -0.31
25 AT2G21380 Kinesin motor family protein -0.64 0.3 -0.32
26 AT3G24140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 FAMA -0.63 0.32 -0.32
27 AT1G69600 zinc finger homeodomain 1 ARABIDOPSIS THALIANA HOMEOBOX
PROTEIN 29, zinc finger
homeodomain 1, ZINC FINGER
HOMEODOMAIN 11		 0.63 0.32 -0.32
28 AT1G27680 ADPGLC-PPase large subunit ADPGLC-PPase large subunit -0.63 0.32 -0.29
29 AT2G22190 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
E		 -0.63 0.33 -0.32
30 AT4G04070 transposable element gene -0.63 0.3 -0.32
31 AT2G26570 Plant protein of unknown function (DUF827) WEAK CHLOROPLAST MOVEMENT UNDER
BLUE LIGHT 1		 -0.63 0.33 -0.32
32 AT3G02830 zinc finger protein 1 zinc finger protein 1 -0.63 0.32 -0.31
33 AT2G22420 Peroxidase superfamily protein 0.62 0.32 -0.32
34 AT5G18240 myb-related protein 1 ARABIDOPSIS MYB-RELATED PROTEIN 1,
myb-related protein 1		 -0.62 0.35 -0.3
35 AT5G61290 Flavin-binding monooxygenase family protein -0.62 0.31 -0.33
36 AT1G03440 Leucine-rich repeat (LRR) family protein -0.62 0.29 -0.33
37 AT1G33430 Galactosyltransferase family protein -0.62 0.31 -0.3
38 AT4G14210 phytoene desaturase 3 PIGMENT DEFECTIVE 226, PHYTOENE
DESATURASE, phytoene desaturase 3		 -0.62 0.3 -0.31
39 AT1G66980 suppressor of npr1-1 constitutive 4 Glycerophosphodiester
phosphodiesterase (GDPD) like 2,
suppressor of npr1-1 constitutive
4		 -0.62 0.33 -0.33
40 AT1G75580 SAUR-like auxin-responsive protein family 0.62 0.33 -0.33
41 AT2G37410 translocase inner membrane subunit 17-2 translocase inner membrane subunit
17-2, TRANSLOCASE OF THE INNER
MEMBRANE 17, translocase inner
membrane subunit 17-2		 0.61 0.33 -0.34
42 AT1G33790 jacalin lectin family protein 0.61 0.32 -0.3
43 AT1G33930 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.3 -0.33
44 AT2G18780 F-box and associated interaction domains-containing protein 0.61 0.31 -0.32
45 AT1G70820 phosphoglucomutase, putative / glucose phosphomutase,
putative		 -0.61 0.32 -0.31
46 AT1G48660 Auxin-responsive GH3 family protein 0.6 0.32 -0.31
47 AT3G53450 Putative lysine decarboxylase family protein LONELY GUY 4 0.6 0.32 -0.3
48 AT5G02420 unknown protein; Has 90 Blast hits to 90 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.33 -0.32
49 AT3G21380 Mannose-binding lectin superfamily protein 0.59 0.32 -0.33
50 AT4G26860 Predicted pyridoxal phosphate-dependent enzyme, YBL036C
type		 -0.59 0.32 -0.33
51 AT2G31450 DNA glycosylase superfamily protein ATNTH1 -0.59 0.31 -0.33
52 AT2G17850 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.59 0.33 -0.34
53 AT4G16990 disease resistance protein (TIR-NBS class), putative RESISTANCE TO LEPTOSPHAERIA
MACULANS 3		 -0.59 0.32 -0.32
54 AT4G24900 unknown protein; Has 119 Blast hits to 96 proteins in 40
species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.59 0.3 -0.31
55 AT1G44810 DNA-binding storekeeper protein-related transcriptional
regulator		 0.59 0.31 -0.32
56 AT2G28810 Dof-type zinc finger DNA-binding family protein -0.58 0.31 -0.31
57 AT4G36930 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 SPATULA 0.58 0.33 -0.32
58 AT1G50440 RING/FYVE/PHD zinc finger superfamily protein -0.58 0.32 -0.31
59 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 0.58 0.31 -0.32
60 AT3G46200 nudix hydrolase homolog 9 nudix hydrolase homolog 9, nudix
hydrolase homolog 9		 -0.58 0.35 -0.32
61 AT1G66460 Protein kinase superfamily protein -0.58 0.3 -0.33
62 AT2G41650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.58 0.32 -0.33
63 AT1G59780 NB-ARC domain-containing disease resistance protein 0.58 0.3 -0.31
64 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family -0.58 0.31 -0.3
65 AT5G14800 pyrroline-5- carboxylate (P5C) reductase AT-P5C1, PYRROLINE-5- CARBOXYLATE
(P5C) REDUCTASE, EMBRYO DEFECTIVE
2772, pyrroline-5- carboxylate
(P5C) reductase		 0.58 0.33 -0.34
66 AT1G28760 Uncharacterized conserved protein (DUF2215) 0.57 0.31 -0.3
67 AT1G26300 BSD domain-containing protein 0.57 0.32 -0.3
68 AT1G21065 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0047
(InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins
in 1137 species: Archae - 215; Bacteria - 2154; Metazoa -
42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes
- 1191 (source: NCBI BLink).		 -0.57 0.31 -0.34
69 AT3G45290 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 3,
MILDEW RESISTANCE LOCUS O 3		 -0.57 0.31 -0.32
70 AT4G16050 Aminotransferase-like, plant mobile domain family protein 0.57 0.32 -0.32
71 AT5G57140 purple acid phosphatase 28 PURPLE ACID PHOSPHATASE 28, purple
acid phosphatase 28		 -0.57 0.33 -0.31
72 AT2G32860 beta glucosidase 33 beta glucosidase 33 -0.57 0.34 -0.31
73 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 -0.56 0.32 -0.34
74 AT4G31730 glutamine dumper 1 glutamine dumper 1 0.56 0.31 -0.32
75 AT5G57800 Fatty acid hydroxylase superfamily ECERIFERUM 3, FACELESS POLLEN 1,
WAX2, YRE		 0.56 0.32 -0.31
76 AT5G10440 cyclin d4;2 cyclin d4;2 -0.56 0.35 -0.32
77 AT3G60920 CONTAINS InterPro DOMAIN/s: Beige/BEACH
(InterPro:IPR000409); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / beige-related
(TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins in
214 species: Archae - 2; Bacteria - 29; Metazoa - 830;
Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes -
544 (source: NCBI BLink).		 -0.56 0.33 -0.34
78 AT5G44870 Disease resistance protein (TIR-NBS-LRR class) family LAZARUS 5, tolerance to Tobacco
ringspot virus 1		 -0.56 0.32 -0.3
79 AT2G24390 AIG2-like (avirulence induced gene) family protein -0.56 0.33 -0.33
80 AT5G11610 Exostosin family protein -0.56 0.33 -0.31
81 AT1G47990 gibberellin 2-oxidase 4 Arabidopsis thaliana gibberellin
2-oxidase 4, gibberellin 2-oxidase
4		 0.56 0.3 -0.29
82 AT5G20140 SOUL heme-binding family protein -0.56 0.29 -0.33
83 AT1G26600 CLAVATA3/ESR-RELATED 9 CLAVATA3/ESR-RELATED 9 -0.56 0.31 -0.32
84 AT1G33080 MATE efflux family protein 0.55 0.3 -0.31
85 AT1G10770 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.55 0.3 -0.29
86 AT2G18490 C2H2-like zinc finger protein 0.54 0.31 -0.29
87 AT5G65550 UDP-Glycosyltransferase superfamily protein 0.54 0.34 -0.31
88 AT1G60090 beta glucosidase 4 beta glucosidase 4 0.53 0.33 -0.3
89 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 0.53 0.32 -0.29
90 AT3G55560 AT-hook protein of GA feedback 2 AT-hook protein of GA feedback 2,
AT-hook motif nuclear-localized
protein 15		 0.53 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
91 C0133 Kaempferol-3,7-O-α-dirhamnopyranoside Kaempferol-3,7-O-α-L-dirhamnopyranoside Kaempferol-3-rhamnoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) -0.84 0.44 -0.46 C0133
92 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		0.76 0.43 -0.43 C0012
93 C0177 MST_2429.6 - - - -0.68 0.44 -0.46
94 C0196 Phosphatidylcholine-34:3 - Phosphatidylcholine-34:3 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		-0.59 0.48 -0.46 C0196