AT5G02840 : LHY/CCA1-like 1
Query Information
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AGICode AT5G02840
Description LHY/CCA1-like 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G02840 LHY/CCA1-like 1 LHY/CCA1-like 1 1 0.29 -0.32
2 AT3G47295 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 13 Blast hits to 13
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.76 0.32 -0.32
3 AT2G45530 RING/U-box superfamily protein 0.74 0.33 -0.3
4 AT1G79990 structural molecules 0.74 0.34 -0.33
5 AT5G14420 RING domain ligase2 RING domain ligase2 0.72 0.32 -0.32
6 AT5G10460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.72 0.32 -0.31
7 AT4G13640 Homeodomain-like superfamily protein unfertilized embryo sac 16 0.71 0.3 -0.32
8 AT5G25840 Protein of unknown function (DUF1677) 0.7 0.31 -0.33
9 AT3G53030 ser/arg-rich protein kinase 4 ser/arg-rich protein kinase 4 0.7 0.32 -0.32
10 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 0.69 0.35 -0.32
11 AT1G21310 extensin 3 extensin 3, extensin 3,
ROOT-SHOOT-HYPOCOTYL DEFECTIVE		 -0.69 0.33 -0.31
12 AT5G56140 RNA-binding KH domain-containing protein 0.69 0.3 -0.31
13 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 0.69 0.34 -0.31
14 AT3G50190 Plant protein of unknown function (DUF247) -0.68 0.31 -0.33
15 AT4G34460 GTP binding protein beta 1 GTP binding protein beta 1,
ATAGB1, ERECTA-LIKE 4		 0.68 0.31 -0.31
16 AT5G25760 peroxin4 peroxin4, ubiquitin-conjugating
enzyme 21		 0.67 0.3 -0.31
17 AT5G36250 Protein phosphatase 2C family protein 0.66 0.33 -0.3
18 AT2G45320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; Has 45 Blast hits to 45 proteins
in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi
- 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.66 0.33 -0.32
19 AT4G33900 Galactose oxidase/kelch repeat superfamily protein 0.66 0.32 -0.31
20 AT5G62880 RAC-like 10 RAC-like 10, ARABIDOPSIS THALIANA
RAC-LIKE 10, RHO-RELATED PROTEIN
FROM PLANTS 11, RAC-like 10,
RHO-related protein from plants 11		 0.66 0.34 -0.3
21 AT2G01930 basic pentacysteine1 BASIC PENTACYSTEINE1, BBR, basic
pentacysteine1		 0.66 0.32 -0.32
22 AT2G45290 Transketolase -0.66 0.31 -0.31
23 AT1G43800 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 -0.65 0.32 -0.32
24 AT1G17410 Nucleoside diphosphate kinase family protein 0.65 0.31 -0.3
25 AT1G31440 SH3 domain-containing protein 0.65 0.29 -0.32
26 AT3G07130 purple acid phosphatase 15 PURPLE ACID PHOSPHATASE 15, purple
acid phosphatase 15		 -0.65 0.31 -0.31
27 AT1G53400 Ubiquitin domain-containing protein 0.64 0.32 -0.3
28 AT4G28610 phosphate starvation response 1 AtPHR1, phosphate starvation
response 1		 0.63 0.33 -0.32
29 AT5G42840 Cysteine/Histidine-rich C1 domain family protein -0.63 0.31 -0.32
30 AT3G10760 Homeodomain-like superfamily protein 0.62 0.31 -0.34
31 AT4G22770 AT hook motif DNA-binding family protein -0.62 0.31 -0.31
32 AT4G31140 O-Glycosyl hydrolases family 17 protein 0.62 0.31 -0.33
33 AT1G13950 eukaryotic elongation factor 5A-1 EUKARYOTIC ELONGATION FACTOR 5A-1,
EIF-5A, EUKARYOTIC ELONGATION
FACTOR 5A, eukaryotic elongation
factor 5A-1		 -0.62 0.31 -0.3
34 AT4G20000 VQ motif-containing protein -0.62 0.31 -0.31
35 AT4G27750 binding IMPAIRED SUCROSE INDUCTION 1 0.62 0.32 -0.32
36 AT5G11920 6-&1-fructan exohydrolase 6-&1-fructan exohydrolase,
6-&1-fructan exohydrolase		 -0.62 0.33 -0.3
37 AT3G03880 Protein of unknown function (DUF1639) 0.62 0.33 -0.31
38 AT3G26125 cytochrome P450, family 86, subfamily C, polypeptide 2 cytochrome P450, family 86,
subfamily C, polypeptide 2		 0.62 0.33 -0.34
39 AT4G20070 allantoate amidohydrolase allantoate amidohydrolase,
allantoate amidohydrolase		 0.62 0.3 -0.31
40 AT5G39660 cycling DOF factor 2 cycling DOF factor 2 0.61 0.31 -0.34
41 AT3G04720 pathogenesis-related 4 HEVEIN-LIKE, PR-4,
pathogenesis-related 4		 -0.61 0.33 -0.3
42 AT1G08650 phosphoenolpyruvate carboxylase kinase 1 PHOSPHOENOLPYRUVATE CARBOXYLASE
KINASE 1, phosphoenolpyruvate
carboxylase kinase 1		 -0.61 0.32 -0.31
43 AT1G34270 Exostosin family protein 0.61 0.33 -0.32
44 AT5G52570 beta-carotene hydroxylase 2 B2, BETA CAROTENOID HYDROXYLASE 2,
beta-carotene hydroxylase 2, CHY2		 0.61 0.31 -0.28
45 AT2G21240 basic pentacysteine 4 BASIC PENTACYSTEINE 4, BBR, basic
pentacysteine 4		 0.61 0.34 -0.32
46 AT1G13750 Purple acid phosphatases superfamily protein -0.61 0.28 -0.29
47 AT2G41700 ATP-binding cassette A1 ATP-binding cassette A1,
Arabidopsis thaliana ATP-binding
cassette A1		 -0.61 0.31 -0.34
48 AT2G46940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G62070.1); Has 143 Blast hits
to 141 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 0; Plants - 139; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.32
49 AT5G59950 RNA-binding (RRM/RBD/RNP motifs) family protein 0.61 0.33 -0.31
50 AT3G62690 AtL5 AtL5 0.6 0.32 -0.3
51 AT2G02100 low-molecular-weight cysteine-rich 69 low-molecular-weight cysteine-rich
69, PDF2.2		 0.6 0.31 -0.32
52 AT3G21865 peroxin 22 peroxin 22 0.6 0.32 -0.3
53 AT5G54855 Pollen Ole e 1 allergen and extensin family protein 0.6 0.29 -0.33
54 AT4G12400 stress-inducible protein, putative Hop3 -0.6 0.32 -0.3
55 AT1G19710 UDP-Glycosyltransferase superfamily protein -0.6 0.32 -0.3
56 AT1G23640 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana
protein match is: Domain of unknown function DUF220
(TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in
12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.6 0.32 -0.29
57 AT1G58190 receptor like protein 9 receptor like protein 9, receptor
like protein 9		 -0.59 0.31 -0.31
58 AT2G31450 DNA glycosylase superfamily protein ATNTH1 0.59 0.33 -0.33
59 AT4G09130 RING/U-box superfamily protein -0.59 0.32 -0.33
60 AT3G19330 Protein of unknown function (DUF677) 0.59 0.29 -0.31
61 AT5G18580 tonneau 2 (TON2) EMBRYO DEFECTIVE 40, FASS 1, FASS
2, FS1, GORDO, TONNEAU 2		 0.58 0.32 -0.31
62 AT1G73650 Protein of unknown function (DUF1295) 0.58 0.29 -0.3
63 AT1G12820 auxin signaling F-box 3 auxin signaling F-box 3 0.58 0.31 -0.29
64 AT4G32551 LisH dimerisation motif;WD40/YVTN repeat-like-containing
domain		 LEUNIG, ROTUNDA 2 0.58 0.32 -0.3
65 AT1G72850 Disease resistance protein (TIR-NBS class) -0.58 0.33 -0.29
66 AT1G72050 transcription factor IIIA transcription factor IIIA 0.58 0.32 -0.29
67 AT1G56010 NAC domain containing protein 1 Arabidopsis NAC domain containing
protein 21, Arabidopsis NAC domain
containing protein 22, NAC domain
containing protein 1		 -0.58 0.31 -0.31
68 AT5G38910 RmlC-like cupins superfamily protein -0.58 0.31 -0.32
69 AT2G37890 Mitochondrial substrate carrier family protein -0.57 0.32 -0.31
70 AT5G04670 Enhancer of polycomb-like transcription factor protein 0.57 0.3 -0.31
71 AT5G59305 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.57 0.33 -0.3
72 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 0.57 0.31 -0.32
73 AT3G51880 high mobility group B1 AtHMGB1, high mobility group B1,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D1		 0.57 0.32 -0.34
74 AT4G25510 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.3 -0.33
75 AT3G30230 myosin heavy chain-related 0.57 0.31 -0.29
76 AT3G18160 peroxin 3-1 peroxin 3-1 0.57 0.3 -0.31
77 AT4G18720 Transcription factor IIS protein 0.56 0.32 -0.34
78 AT3G55180 alpha/beta-Hydrolases superfamily protein -0.56 0.29 -0.32
79 AT5G15850 CONSTANS-like 1 ATCOL1, CONSTANS-like 1 0.56 0.32 -0.29
80 AT1G76510 ARID/BRIGHT DNA-binding domain-containing protein 0.56 0.31 -0.29
81 AT4G08030 transposable element gene 0.56 0.32 -0.31
82 AT1G17370 oligouridylate binding protein 1B oligouridylate binding protein 1B 0.56 0.35 -0.29
83 AT1G63030 Integrase-type DNA-binding superfamily protein DWARF AND DELAYED FLOWERING 2 0.56 0.32 -0.31
84 AT1G15700 ATPase, F1 complex, gamma subunit protein ATPC2 0.56 0.31 -0.31
85 AT5G55170 small ubiquitin-like modifier 3 ATSUMO3, SMALL UBIQUITIN-LIKE
MODIFIER 3, SMALL UBIQUITIN-LIKE
MODIFIER 3, small ubiquitin-like
modifier 3		 -0.55 0.33 -0.29
86 AT1G55060 ubiquitin 12 ubiquitin 12 -0.54 0.29 -0.31
87 AT3G28720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in
85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi
- 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732
(source: NCBI BLink).		 -0.54 0.31 -0.33
88 AT1G63530 BEST Arabidopsis thaliana protein match is:
hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins
in 434 species: Archae - 1; Bacteria - 1259; Metazoa -
3608; Fungi - 2247; Plants - 291; Viruses - 90; Other
Eukaryotes - 2716 (source: NCBI BLink).		 -0.53 0.31 -0.32
89 AT1G67490 glucosidase 1 glucosidase 1, KNOPF -0.52 0.32 -0.3
90 AT5G56250 hapless 8 HAPLESS 8 -0.52 0.32 -0.32
91 AT5G67090 Subtilisin-like serine endopeptidase family protein -0.52 0.29 -0.3
92 AT2G26020 plant defensin 1.2b plant defensin 1.2b -0.51 0.3 -0.3
93 AT1G21140 Vacuolar iron transporter (VIT) family protein -0.51 0.31 -0.33
94 AT1G54940 plant glycogenin-like starch initiation protein 4 plant glycogenin-like starch
initiation protein 4		 -0.51 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
95 C0242 Suberic acid - - - 0.6 0.46 -0.46