AT3G63130 : RAN GTPASE-ACTIVATING PROTEIN 1
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT3G63130
Description RAN GTPase activating protein 1
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 1 0.33 -0.32
2 AT5G66750 chromatin remodeling 1 ATDDM1, CHA1, CHROMATIN REMODELING
1, chromatin remodeling 1,
DECREASED DNA METHYLATION 1,
SOMNIFEROUS 1, SOM4		 0.84 0.3 -0.32
3 AT5G64200 ortholog of human splicing factor SC35 ortholog of human splicing factor
SC35, ARABIDOPSIS THALIANA
ORTHOLOG OF HUMAN SPLICING FACTOR
SC35, ortholog of human splicing
factor SC35		 0.8 0.34 -0.3
4 AT5G20890 TCP-1/cpn60 chaperonin family protein 0.79 0.32 -0.31
5 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.78 0.34 -0.3
6 AT3G56620 nodulin MtN21 /EamA-like transporter family protein -0.78 0.33 -0.3
7 AT2G16780 Transducin family protein / WD-40 repeat family protein MSI02, MULTICOPY SUPPRESSOR OF
IRA1 2, NFC02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 2		 0.77 0.32 -0.31
8 AT4G39860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits
to 146 proteins in 19 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.77 0.33 -0.31
9 AT2G27970 CDK-subunit 2 CDK-subunit 2 0.77 0.33 -0.32
10 AT3G60660 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1395 (InterPro:IPR009829); Has 131
Blast hits to 131 proteins in 44 species: Archae - 0;
Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink).		 0.76 0.32 -0.31
11 AT5G43380 type one serine/threonine protein phosphatase 6 type one serine/threonine protein
phosphatase 6		 -0.76 0.32 -0.32
12 AT4G37490 CYCLIN B1;1 CYCLIN 1, CYCB1, CYCLIN B1;1 0.76 0.31 -0.3
13 AT1G21880 lysm domain GPI-anchored protein 1 precursor lysm domain GPI-anchored protein 1
precursor		 0.76 0.34 -0.31
14 AT3G19990 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 118 Blast hits to 118 proteins in 41 species: Archae -
0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56;
Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).		 -0.76 0.32 -0.3
15 AT4G30220 small nuclear ribonucleoprotein F small nuclear ribonucleoprotein F 0.76 0.34 -0.29
16 AT3G01200 PPDK regulatory protein 2 PPDK regulatory protein 2, PPDK
regulatory protein 2		 -0.76 0.31 -0.33
17 AT1G31550 GDSL-like Lipase/Acylhydrolase superfamily protein -0.76 0.3 -0.3
18 AT5G58670 phospholipase C1 ARABIDOPSIS THALIANA PHOSPHOLIPASE
C, phospholipase C1, phospholipase
C 1, phospholipase C1		 -0.76 0.32 -0.3
19 AT1G73620 Pathogenesis-related thaumatin superfamily protein 0.76 0.34 -0.31
20 AT4G13210 Pectin lyase-like superfamily protein 0.76 0.34 -0.33
21 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.75 0.32 -0.31
22 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.75 0.31 -0.31
23 AT4G29010 Enoyl-CoA hydratase/isomerase family ABNORMAL INFLORESCENCE MERISTEM -0.75 0.31 -0.3
24 AT1G30220 inositol transporter 2 ARABIDOPSIS THALIANA INOSITOL
TRANSPORTER 2, inositol
transporter 2		 -0.75 0.33 -0.32
25 AT4G30130 Protein of unknown function (DUF630 and DUF632) 0.74 0.32 -0.33
26 AT1G23410 Ribosomal protein S27a / Ubiquitin family protein 0.74 0.32 -0.32
27 AT2G29450 glutathione S-transferase tau 5 AT103-1A, ARABIDOPSIS THALIANA
GLUTATHIONE S-TRANSFERASE TAU 1,
glutathione S-transferase tau 5,
glutathione S-transferase tau 5		 -0.74 0.32 -0.32
28 AT2G35605 SWIB/MDM2 domain superfamily protein 0.74 0.3 -0.32
29 AT3G12180 Cornichon family protein 0.74 0.32 -0.3
30 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 0.74 0.34 -0.32
31 AT1G78770 anaphase promoting complex 6 anaphase promoting complex 6 0.73 0.32 -0.32
32 AT3G12710 DNA glycosylase superfamily protein 0.73 0.33 -0.32
33 AT3G18190 TCP-1/cpn60 chaperonin family protein 0.73 0.32 -0.31
34 AT2G42740 ribosomal protein large subunit 16A ribosomal protein large subunit
16A		 0.73 0.31 -0.31
35 AT2G38810 histone H2A 8 histone H2A 8 0.73 0.3 -0.3
36 AT5G46700 Tetraspanin family protein TETRASPANIN 1, TORNADO 2 0.73 0.33 -0.3
37 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.73 0.33 -0.31
38 AT1G72230 Cupredoxin superfamily protein 0.73 0.3 -0.32
39 AT5G10240 asparagine synthetase 3 asparagine synthetase 3 0.72 0.32 -0.31
40 AT3G63200 PATATIN-like protein 9 PLA IIIB, PATATIN-like protein 9 0.72 0.32 -0.31
41 AT5G11840 Protein of unknown function (DUF1230) -0.72 0.31 -0.32
42 AT1G58200 MSCS-like 3 MSCS-like 3 -0.72 0.32 -0.31
43 AT5G12040 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.72 0.32 -0.32
44 AT1G18040 cyclin-dependent kinase D1;3 CYCLIN-DEPENDENT KINASE D1;3,
CAK2AT, cyclin-dependent kinase
D1;3		 0.72 0.32 -0.33
45 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.72 0.31 -0.3
46 AT3G22550 Protein of unknown function (DUF581) -0.72 0.33 -0.3
47 AT2G24860 DnaJ/Hsp40 cysteine-rich domain superfamily protein -0.72 0.32 -0.32
48 AT1G13730 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 0.72 0.34 -0.33
49 AT2G11910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to
31060 proteins in 1576 species: Archae - 765; Bacteria -
32670; Metazoa - 21164; Fungi - 12252; Plants - 4238;
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI
BLink).		 0.72 0.31 -0.31
50 AT1G05790 lipase class 3 family protein -0.72 0.31 -0.31
51 AT2G36970 UDP-Glycosyltransferase superfamily protein -0.72 0.3 -0.32
52 AT3G55005 tonneau 1b (TON1b) tonneau 1b 0.71 0.32 -0.31
53 AT5G57815 Cytochrome c oxidase, subunit Vib family protein -0.71 0.32 -0.31
54 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 0.71 0.32 -0.31
55 AT4G33400 Vacuolar import/degradation, Vid27-related protein 0.71 0.32 -0.31
56 AT2G43530 Scorpion toxin-like knottin superfamily protein -0.71 0.32 -0.31
57 AT5G02940 Protein of unknown function (DUF1012) -0.71 0.33 -0.32
58 AT5G52430 hydroxyproline-rich glycoprotein family protein -0.71 0.33 -0.33
59 AT2G32590 LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro
DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits
to 447 proteins in 202 species: Archae - 0; Bacteria - 4;
Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other
Eukaryotes - 108 (source: NCBI BLink).		 EMBRYO DEFECTIVE 2795 0.7 0.31 -0.31
60 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.7 0.32 -0.31
61 AT5G35560 DENN (AEX-3) domain-containing protein -0.7 0.37 -0.32
62 AT1G59820 aminophospholipid ATPase 3 aminophospholipid ATPase 3 -0.7 0.34 -0.31
63 AT4G21470 riboflavin kinase/FMN hydrolase riboflavin kinase/FMN hydrolase,
riboflavin kinase/FMN hydrolase		 -0.7 0.33 -0.3
64 AT5G04920 EAP30/Vps36 family protein -0.7 0.3 -0.33
65 AT1G78150 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G35780.1); Has 152 Blast hits
to 146 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 2; Plants - 149; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.32 -0.31
66 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 0.69 0.32 -0.33
67 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.69 0.34 -0.31
68 AT5G20280 sucrose phosphate synthase 1F sucrose phosphate synthase 1F,
sucrose phosphate synthase 1F,
sucrose-phosphate synthase A1		 -0.69 0.31 -0.33
69 AT4G13710 Pectin lyase-like superfamily protein 0.69 0.31 -0.34
70 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.69 0.33 -0.31
71 AT3G62960 Thioredoxin superfamily protein 0.69 0.34 -0.31
72 AT2G13820 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 AtXYP2, xylogen protein 2 0.69 0.32 -0.31
73 AT3G45090 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.69 0.31 -0.32
74 AT3G51310 VPS35 homolog C VPS35 homolog C -0.69 0.33 -0.32
75 AT4G02120 CTP synthase family protein -0.68 0.29 -0.32
76 AT4G39540 shikimate kinase 2 ATSK2, shikimate kinase 2 -0.68 0.33 -0.33
77 AT5G11720 Glycosyl hydrolases family 31 protein -0.68 0.29 -0.32
78 AT1G66390 myb domain protein 90 ATMYB90, myb domain protein 90,
PRODUCTION OF ANTHOCYANIN PIGMENT
2		 -0.68 0.31 -0.3
79 AT4G01010 cyclic nucleotide-gated channel 13 CYCLIC NUCLEOTIDE-GATED CHANNEL
13, cyclic nucleotide-gated
channel 13		 -0.68 0.31 -0.32
80 AT3G47060 FTSH protease 7 FTSH protease 7 -0.67 0.33 -0.3
81 AT3G25180 cytochrome P450, family 82, subfamily G, polypeptide 1 cytochrome P450, family 82,
subfamily G, polypeptide 1		 -0.67 0.31 -0.33
82 AT2G27820 prephenate dehydratase 1 arogenate dehydratase 3,
prephenate dehydratase 1		 -0.67 0.31 -0.31
83 AT5G23810 amino acid permease 7 amino acid permease 7 -0.67 0.29 -0.31
84 AT4G36400 FAD-linked oxidases family protein D-2-hydroxyglutarate dehydrogenase -0.67 0.33 -0.33
85 AT3G50080 VIER F-box proteine 2 VIER F-box proteine 2 -0.66 0.31 -0.3
86 AT4G39140 RING/U-box superfamily protein -0.66 0.33 -0.3
87 AT1G56650 production of anthocyanin pigment 1 MYB DOMAIN PROTEIN 75,
MYELOBLASTOSIS PROTEIN 75,
production of anthocyanin pigment
1, SUC-INDUCED ANTHOCYANIN
ACCUMULATION 1		 -0.66 0.29 -0.32
88 AT2G39030 Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity 1 -0.66 0.32 -0.31
89 AT2G27490 dephospho-CoA kinase family ATCOAE -0.66 0.31 -0.3
90 AT5G42740 Sugar isomerase (SIS) family protein -0.66 0.31 -0.31
91 AT5G52450 MATE efflux family protein -0.66 0.32 -0.3
92 AT2G04620 Cation efflux family protein -0.66 0.3 -0.32
93 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.66 0.31 -0.33
94 AT2G41790 Insulinase (Peptidase family M16) family protein -0.66 0.34 -0.33
95 AT4G25660 PPPDE putative thiol peptidase family protein -0.65 0.32 -0.31
96 AT1G60940 SNF1-related protein kinase 2.10 SUCROSE NONFERMENTING 1-RELATED
PROTEIN KINASE 2-10, SNF1-related
protein kinase 2.10, SNF1-RELATED
KINASE 2B		 -0.65 0.32 -0.3
97 AT2G43850 Integrin-linked protein kinase family -0.65 0.33 -0.31
98 AT1G78200 Protein phosphatase 2C family protein -0.65 0.33 -0.34
99 AT3G08870 Concanavalin A-like lectin protein kinase family protein -0.65 0.35 -0.3
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
100 C0217 Putative glucosinole - - - 0.89 0.41 -0.45
101 C0029 3-Indolylacetonitrile - Indole-3-acetonitrile indole glucosinolate breakdown (insect chewing induced),
IAA biosynthesis I,
camalexin biosynthesis 		-0.65 0.33 -0.3 C0029