AT3G63400 : -
Query Information
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AGICode AT3G63400
Description Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 1 0.33 -0.31
2 AT3G26410 methyltransferases;nucleic acid binding AtTRM11, tRNA modification 11 0.85 0.32 -0.3
3 AT2G03820 nonsense-mediated mRNA decay NMD3 family protein 0.84 0.33 -0.32
4 AT5G22840 Protein kinase superfamily protein 0.82 0.31 -0.31
5 AT5G52820 WD-40 repeat family protein / notchless protein, putative 0.8 0.32 -0.32
6 AT5G25800 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.8 0.32 -0.31
7 AT1G02870 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome biogenesis protein Nop16
(InterPro:IPR019002); Has 104 Blast hits to 104 proteins in
57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.8 0.32 -0.31
8 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.79 0.31 -0.32
9 AT1G15440 periodic tryptophan protein 2 (PERIODIC TRYPTOPHAN PROTEIN 2,
periodic tryptophan protein 2		 0.79 0.34 -0.32
10 AT1G30960 GTP-binding family protein 0.79 0.32 -0.31
11 AT4G38890 FMN-linked oxidoreductases superfamily protein 0.79 0.32 -0.31
12 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.78 0.33 -0.32
13 AT5G12220 las1-like family protein 0.78 0.31 -0.3
14 AT1G15420 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12
(InterPro:IPR007148); Has 764 Blast hits to 656 proteins in
193 species: Archae - 0; Bacteria - 42; Metazoa - 237;
Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes -
223 (source: NCBI BLink).		 0.78 0.3 -0.3
15 AT1G79490 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 2217 0.78 0.32 -0.3
16 AT1G04870 protein arginine methyltransferase 10 ATPRMT10, protein arginine
methyltransferase 10		 0.77 0.32 -0.31
17 AT5G59980 Polymerase/histidinol phosphatase-like 0.77 0.32 -0.31
18 AT4G04180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.33 -0.33
19 AT3G23080 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.77 0.32 -0.31
20 AT2G18520 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.3 -0.34
21 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.76 0.32 -0.32
22 AT1G62730 Terpenoid synthases superfamily protein 0.76 0.3 -0.3
23 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.76 0.32 -0.33
24 AT4G34910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.76 0.32 -0.31
25 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 0.76 0.32 -0.32
26 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.76 0.33 -0.32
27 AT3G21540 transducin family protein / WD-40 repeat family protein 0.76 0.31 -0.34
28 AT1G43860 sequence-specific DNA binding transcription factors 0.75 0.31 -0.3
29 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 0.75 0.32 -0.32
30 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.75 0.31 -0.31
31 AT1G71850 Ubiquitin carboxyl-terminal hydrolase family protein 0.75 0.32 -0.32
32 AT4G01320 Peptidase family M48 family protein ATSTE24, STE24 0.75 0.33 -0.31
33 AT5G52420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.75 0.3 -0.28
34 AT5G22060 DNAJ homologue 2 ARABIDOPSIS THALIANA DNAJ
HOMOLOGUE 2, DNAJ homologue 2		 0.75 0.34 -0.31
35 AT5G02820 Spo11/DNA topoisomerase VI, subunit A protein BRASSINOSTEROID INSENSITIVE 5,
ROOT HAIRLESS 2		 0.74 0.31 -0.32
36 AT5G09420 translocon at the outer membrane of chloroplasts 64-V AtmtOM64, translocon at the outer
membrane of chloroplasts 64-V,
ARABIDOPSIS THALIANA TRANSLOCON AT
THE OUTER MEMBRANE OF CHLOROPLASTS
64-V, outer membrane 64,
translocon at the outer membrane
of chloroplasts 64-V		 0.74 0.3 -0.32
37 AT2G20370 Exostosin family protein AtMUR3, KATAMARI 1, MURUS 3 0.74 0.31 -0.31
38 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.73 0.32 -0.33
39 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.73 0.3 -0.3
40 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.3 -0.33
41 AT5G50315 transposable element gene 0.73 0.3 -0.3
42 AT1G11390 Protein kinase superfamily protein 0.73 0.33 -0.32
43 AT1G61640 Protein kinase superfamily protein 0.73 0.3 -0.31
44 AT1G77030 hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases		 0.73 0.29 -0.3
45 AT4G39260 cold, circadian rhythm, and RNA binding 1 GLYCINE-RICH PROTEIN 8, cold,
circadian rhythm, and RNA binding
1, glycine-rich RNA-binding
protein 8, GRP8		 0.73 0.32 -0.3
46 AT5G37930 Protein with RING/U-box and TRAF-like domains -0.73 0.33 -0.31
47 AT5G22330 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATTIP49A, RESISTANCE TO
PSEUDOMONAS SYRINGAE PV MACULICOLA
INTERACTOR 1		 0.72 0.29 -0.32
48 AT3G48250 Pentatricopeptide repeat (PPR) superfamily protein Buthionine sulfoximine-insensitive
roots 6		 0.72 0.32 -0.33
49 AT4G28480 DNAJ heat shock family protein 0.72 0.31 -0.32
50 AT4G25500 arginine/serine-rich splicing factor 35 arginine/serine-rich splicing
factor 40, AT-SRP40, ARABIDOPSIS
THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35, ATRSP40,
arginine/serine-rich splicing
factor 40, arginine/serine-rich
splicing factor 35		 0.72 0.32 -0.32
51 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 0.72 0.32 -0.31
52 AT5G51130 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.31 -0.32
53 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.72 0.3 -0.31
54 AT1G63800 ubiquitin-conjugating enzyme 5 ubiquitin-conjugating enzyme 5 -0.72 0.31 -0.31
55 AT2G12550 ubiquitin-associated (UBA)/TS-N domain-containing protein homolog of human NUB1 0.71 0.31 -0.32
56 AT1G02460 Pectin lyase-like superfamily protein 0.71 0.33 -0.32
57 AT3G43510 transposable element gene 0.71 0.3 -0.32
58 AT5G24460 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.71 0.32 -0.31
59 AT4G10060 Beta-glucosidase, GBA2 type family protein -0.71 0.32 -0.33
60 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.71 0.32 -0.3
61 AT4G23040 Ubiquitin-like superfamily protein 0.71 0.31 -0.31
62 AT5G61030 glycine-rich RNA-binding protein 3 glycine-rich RNA-binding protein 3 0.71 0.32 -0.31
63 AT3G57360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits
to 122 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 0.7 0.36 -0.32
64 AT3G19630 Radical SAM superfamily protein 0.7 0.33 -0.31
65 AT1G09415 NIM1-interacting 3 NIM1-interacting 3 -0.7 0.33 -0.32
66 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.7 0.31 -0.32
67 AT4G30935 WRKY DNA-binding protein 32 ATWRKY32, WRKY DNA-binding protein
32		 0.7 0.32 -0.32
68 AT3G11620 alpha/beta-Hydrolases superfamily protein -0.7 0.32 -0.33
69 AT3G53990 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.7 0.32 -0.32
70 AT2G24762 glutamine dumper 4 glutamine dumper 4, glutamine
dumper 4		 -0.7 0.3 -0.31
71 AT2G21520 Sec14p-like phosphatidylinositol transfer family protein 0.7 0.31 -0.33
72 AT1G71210 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.31 -0.29
73 AT4G01510 Arv1-like protein ARV2 -0.7 0.31 -0.32
74 AT1G68190 B-box zinc finger family protein -0.69 0.31 -0.31
75 AT1G67080 abscisic acid (aba)-deficient 4 abscisic acid (ABA)-deficient 4 -0.69 0.31 -0.31
76 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.69 0.33 -0.3
77 AT5G58760 damaged DNA binding 2 damaged DNA binding 2 0.69 0.3 -0.31
78 AT1G80920 Chaperone DnaJ-domain superfamily protein AtJ8, translocon at the outer
envelope membrane of chloroplasts
12, J8, translocon at the outer
envelope membrane of chloroplasts
12		 -0.69 0.31 -0.32
79 AT5G14450 GDSL-like Lipase/Acylhydrolase superfamily protein -0.69 0.32 -0.32
80 AT2G17980 Sec1/munc18-like (SM) proteins superfamily ATSLY1 0.69 0.32 -0.3
81 AT4G33430 BRI1-associated receptor kinase ATBAK1, SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 3,
BRI1-associated receptor kinase,
ELONGATED, RECEPTOR KINASES LIKE
SERK 10, SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 3		 0.69 0.33 -0.33
82 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.69 0.32 -0.32
83 AT3G18270 cytochrome P450, family 77, subfamily A, polypeptide 5
pseudogene		 cytochrome P450, family 77,
subfamily A, polypeptide 5
pseudogene		 -0.69 0.29 -0.33
84 AT4G15560 Deoxyxylulose-5-phosphate synthase AtCLA1, CLA, CLOROPLASTOS
ALTERADOS 1, DEF,
1-DEOXY-D-XYLULOSE 5-PHOSPHATE
SYNTHASE 2, 1-DEOXY-D-XYLULOSE
5-PHOSPHATE SYNTHASE		 -0.69 0.3 -0.34
85 AT1G28060 Pre-mRNA-splicing factor 3 0.69 0.31 -0.34
86 AT3G09350 Fes1A Fes1A 0.69 0.31 -0.3
87 AT4G03430 pre-mRNA splicing factor-related EMBRYO DEFECTIVE 2770, STABILIZED
1		 0.69 0.32 -0.32
88 AT1G03905 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 ATP-binding cassette I19 0.69 0.3 -0.31
89 AT3G04820 Pseudouridine synthase family protein 0.69 0.31 -0.3
90 AT5G46920 Intron maturase, type II family protein 0.69 0.31 -0.33
91 AT5G63530 farnesylated protein 3 ARABIDOPSIS THALIANA FARNESYLATED
PROTEIN 3, farnesylated protein 3		 -0.68 0.31 -0.33
92 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.68 0.31 -0.3
93 AT5G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.31 -0.32
94 AT2G23780 RING/U-box superfamily protein -0.68 0.32 -0.29
95 AT1G50950 Thioredoxin protein with domain of unknown function
(DUF1692)		 -0.68 0.3 -0.32
96 AT3G19800 Protein of unknown function (DUF177) -0.67 0.3 -0.32
97 AT1G22540 Major facilitator superfamily protein -0.67 0.33 -0.32
98 AT5G47720 Thiolase family protein -0.67 0.34 -0.31
99 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.66 0.32 -0.32
100 AT3G02700 NC domain-containing protein-related -0.66 0.32 -0.3
101 AT2G31190 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 2, weak auxin
response1		 -0.66 0.3 -0.32
102 AT1G02960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G02965.1); Has 83 Blast hits
to 82 proteins in 37 species: Archae - 0; Bacteria - 2;
Metazoa - 20; Fungi - 7; Plants - 29; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 -0.66 0.32 -0.29
103 AT3G17470 Ca2+-activated RelA/spot homolog ATCRSH, Ca2+-activated RelA/spot
homolog		 -0.66 0.33 -0.31
104 AT3G02500 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits
to 49 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.31 -0.29
105 AT3G19000 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.65 0.32 -0.29
106 AT4G01330 Protein kinase superfamily protein -0.65 0.33 -0.31
107 AT4G18020 CheY-like two-component responsive regulator family protein APRR2, PSEUDO-RESPONSE REGULATOR 2 -0.64 0.31 -0.33
108 AT1G54390 PHD finger protein-related INHIBITOR OF GROWTH 2 -0.64 0.31 -0.3
109 AT1G64720 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 CP5 -0.64 0.29 -0.31
110 AT2G36360 Galactose oxidase/kelch repeat superfamily protein -0.63 0.34 -0.3
111 AT3G61430 plasma membrane intrinsic protein 1A ARABIDOPSIS THALIANA PLASMA
MEMBRANE INTRINSIC PROTEIN 1,
PLASMA MEMBRANE INTRINSIC PROTEIN
1, PLASMA MEMBRANE INTRINSIC
PROTEIN 1;1, plasma membrane
intrinsic protein 1A		 -0.63 0.31 -0.33
112 AT3G06850 2-oxoacid dehydrogenases acyltransferase family protein BCE2, DARK INDUCIBLE 3, LTA1 -0.63 0.31 -0.33
113 AT2G45740 peroxin 11D peroxin 11D -0.63 0.32 -0.32
114 AT4G18570 Tetratricopeptide repeat (TPR)-like superfamily protein -0.63 0.33 -0.34
115 AT1G16780 Inorganic H pyrophosphatase family protein AtVHP2;2, VHP2;2 -0.63 0.29 -0.32
116 AT5G51290 Diacylglycerol kinase family protein -0.62 0.3 -0.32
117 AT5G38360 alpha/beta-Hydrolases superfamily protein -0.62 0.3 -0.33
118 AT5G03230 Protein of unknown function, DUF584 -0.62 0.31 -0.3
119 AT5G66420 CONTAINS InterPro DOMAIN/s: Uncharacterised conserved
protein UCP033271 (InterPro:IPR008322), TIM-barrel signal
transduction protein, predicted (InterPro:IPR009215); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.31 -0.31
120 AT4G29250 HXXXD-type acyl-transferase family protein -0.62 0.31 -0.34
121 AT1G03270 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.62 0.33 -0.33
122 AT4G16745 Exostosin family protein -0.62 0.31 -0.31
123 AT3G09410 Pectinacetylesterase family protein -0.62 0.3 -0.3
124 AT1G27690 Protein of unknown function (DUF620) -0.62 0.34 -0.34
125 AT2G41760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function WDYHV (InterPro:IPR019161); Has 201 Blast
hits to 201 proteins in 90 species: Archae - 0; Bacteria -
2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).		 -0.62 0.33 -0.31
126 AT3G04890 Uncharacterized conserved protein (DUF2358) -0.62 0.33 -0.32
127 AT3G24040 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.61 0.31 -0.32
128 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.61 0.34 -0.32
129 AT2G07680 multidrug resistance-associated protein 11 ATP-binding cassette C13,
multidrug resistance-associated
protein 11, multidrug
resistance-associated protein 11		 -0.6 0.3 -0.31
130 AT5G67150 HXXXD-type acyl-transferase family protein -0.6 0.31 -0.32
131 AT2G28305 Putative lysine decarboxylase family protein ATLOG1, LONELY GUY 1 -0.6 0.29 -0.3